data_1VL7 # _model_server_result.job_id xBd7-EV2o8Z0mxEGD4PSbQ _model_server_result.datetime_utc '2025-03-06 06:38:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":147}' # _entry.id 1VL7 # _exptl.entry_id 1VL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VL7 _cell.length_a 65.001 _cell.length_b 100.326 _cell.length_c 47.667 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 1VL7 _atom_sites.fract_transf_matrix[1][1] 0.015384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 146 2 EDO EDO . D 2 EDO A 1 147 3 EDO EDO . E 2 EDO A 1 148 5 EDO EDO . F 2 EDO B 1 146 1 EDO EDO . G 2 EDO B 1 147 4 EDO EDO . H 2 EDO B 1 148 6 EDO EDO . I 2 EDO B 1 149 7 EDO EDO . J 2 EDO B 1 150 8 EDO EDO . K 3 HOH A 1 149 10 HOH HOH . K 3 HOH A 2 150 16 HOH HOH . K 3 HOH A 3 151 18 HOH HOH . K 3 HOH A 4 152 19 HOH HOH . K 3 HOH A 5 153 21 HOH HOH . K 3 HOH A 6 154 23 HOH HOH . K 3 HOH A 7 155 25 HOH HOH . K 3 HOH A 8 156 27 HOH HOH . K 3 HOH A 9 157 28 HOH HOH . K 3 HOH A 10 158 29 HOH HOH . K 3 HOH A 11 159 30 HOH HOH . K 3 HOH A 12 160 31 HOH HOH . K 3 HOH A 13 161 32 HOH HOH . K 3 HOH A 14 162 34 HOH HOH . K 3 HOH A 15 163 38 HOH HOH . K 3 HOH A 16 164 39 HOH HOH . K 3 HOH A 17 165 42 HOH HOH . K 3 HOH A 18 166 43 HOH HOH . K 3 HOH A 19 167 51 HOH HOH . K 3 HOH A 20 168 52 HOH HOH . K 3 HOH A 21 169 53 HOH HOH . K 3 HOH A 22 170 56 HOH HOH . K 3 HOH A 23 171 59 HOH HOH . K 3 HOH A 24 172 60 HOH HOH . K 3 HOH A 25 173 61 HOH HOH . K 3 HOH A 26 174 62 HOH HOH . K 3 HOH A 27 175 63 HOH HOH . K 3 HOH A 28 176 65 HOH HOH . K 3 HOH A 29 177 66 HOH HOH . K 3 HOH A 30 178 67 HOH HOH . K 3 HOH A 31 179 68 HOH HOH . K 3 HOH A 32 180 69 HOH HOH . K 3 HOH A 33 181 73 HOH HOH . K 3 HOH A 34 182 74 HOH HOH . K 3 HOH A 35 183 76 HOH HOH . K 3 HOH A 36 184 79 HOH HOH . K 3 HOH A 37 185 83 HOH HOH . K 3 HOH A 38 186 87 HOH HOH . K 3 HOH A 39 187 89 HOH HOH . K 3 HOH A 40 188 91 HOH HOH . K 3 HOH A 41 189 93 HOH HOH . K 3 HOH A 42 190 94 HOH HOH . K 3 HOH A 43 191 95 HOH HOH . K 3 HOH A 44 192 96 HOH HOH . K 3 HOH A 45 193 97 HOH HOH . K 3 HOH A 46 194 99 HOH HOH . K 3 HOH A 47 195 100 HOH HOH . K 3 HOH A 48 196 103 HOH HOH . K 3 HOH A 49 197 105 HOH HOH . K 3 HOH A 50 198 106 HOH HOH . K 3 HOH A 51 199 109 HOH HOH . K 3 HOH A 52 200 110 HOH HOH . K 3 HOH A 53 201 111 HOH HOH . K 3 HOH A 54 202 113 HOH HOH . K 3 HOH A 55 203 114 HOH HOH . K 3 HOH A 56 204 115 HOH HOH . K 3 HOH A 57 205 116 HOH HOH . K 3 HOH A 58 206 120 HOH HOH . K 3 HOH A 59 207 121 HOH HOH . K 3 HOH A 60 208 123 HOH HOH . K 3 HOH A 61 209 124 HOH HOH . K 3 HOH A 62 210 127 HOH HOH . K 3 HOH A 63 211 128 HOH HOH . K 3 HOH A 64 212 132 HOH HOH . K 3 HOH A 65 213 133 HOH HOH . K 3 HOH A 66 214 138 HOH HOH . K 3 HOH A 67 215 142 HOH HOH . K 3 HOH A 68 216 144 HOH HOH . K 3 HOH A 69 217 145 HOH HOH . K 3 HOH A 70 218 149 HOH HOH . K 3 HOH A 71 219 150 HOH HOH . K 3 HOH A 72 220 154 HOH HOH . K 3 HOH A 73 221 157 HOH HOH . K 3 HOH A 74 222 159 HOH HOH . K 3 HOH A 75 223 161 HOH HOH . K 3 HOH A 76 224 162 HOH HOH . K 3 HOH A 77 225 163 HOH HOH . K 3 HOH A 78 226 165 HOH HOH . K 3 HOH A 79 227 166 HOH HOH . K 3 HOH A 80 228 168 HOH HOH . K 3 HOH A 81 229 170 HOH HOH . K 3 HOH A 82 230 172 HOH HOH . K 3 HOH A 83 231 173 HOH HOH . K 3 HOH A 84 232 175 HOH HOH . K 3 HOH A 85 233 176 HOH HOH . K 3 HOH A 86 234 177 HOH HOH . K 3 HOH A 87 235 180 HOH HOH . K 3 HOH A 88 236 181 HOH HOH . K 3 HOH A 89 237 184 HOH HOH . K 3 HOH A 90 238 192 HOH HOH . K 3 HOH A 91 239 196 HOH HOH . K 3 HOH A 92 240 198 HOH HOH . K 3 HOH A 93 241 199 HOH HOH . K 3 HOH A 94 242 201 HOH HOH . K 3 HOH A 95 243 203 HOH HOH . K 3 HOH A 96 244 204 HOH HOH . K 3 HOH A 97 245 206 HOH HOH . K 3 HOH A 98 246 207 HOH HOH . K 3 HOH A 99 247 209 HOH HOH . K 3 HOH A 100 248 210 HOH HOH . K 3 HOH A 101 249 212 HOH HOH . K 3 HOH A 102 250 213 HOH HOH . K 3 HOH A 103 251 214 HOH HOH . K 3 HOH A 104 252 216 HOH HOH . K 3 HOH A 105 253 217 HOH HOH . K 3 HOH A 106 254 218 HOH HOH . K 3 HOH A 107 255 220 HOH HOH . K 3 HOH A 108 256 224 HOH HOH . K 3 HOH A 109 257 226 HOH HOH . K 3 HOH A 110 258 230 HOH HOH . K 3 HOH A 111 259 233 HOH HOH . K 3 HOH A 112 260 234 HOH HOH . K 3 HOH A 113 261 238 HOH HOH . K 3 HOH A 114 262 241 HOH HOH . K 3 HOH A 115 263 242 HOH HOH . K 3 HOH A 116 264 243 HOH HOH . K 3 HOH A 117 265 244 HOH HOH . K 3 HOH A 118 266 245 HOH HOH . K 3 HOH A 119 267 246 HOH HOH . K 3 HOH A 120 268 248 HOH HOH . K 3 HOH A 121 269 252 HOH HOH . K 3 HOH A 122 270 255 HOH HOH . K 3 HOH A 123 271 256 HOH HOH . K 3 HOH A 124 272 257 HOH HOH . K 3 HOH A 125 273 258 HOH HOH . K 3 HOH A 126 274 259 HOH HOH . K 3 HOH A 127 275 261 HOH HOH . K 3 HOH A 128 276 263 HOH HOH . K 3 HOH A 129 277 264 HOH HOH . K 3 HOH A 130 278 269 HOH HOH . K 3 HOH A 131 279 270 HOH HOH . K 3 HOH A 132 280 271 HOH HOH . K 3 HOH A 133 281 273 HOH HOH . K 3 HOH A 134 282 276 HOH HOH . L 3 HOH B 1 151 9 HOH HOH . L 3 HOH B 2 152 11 HOH HOH . L 3 HOH B 3 153 12 HOH HOH . L 3 HOH B 4 154 13 HOH HOH . L 3 HOH B 5 155 14 HOH HOH . L 3 HOH B 6 156 15 HOH HOH . L 3 HOH B 7 157 17 HOH HOH . L 3 HOH B 8 158 20 HOH HOH . L 3 HOH B 9 159 22 HOH HOH . L 3 HOH B 10 160 24 HOH HOH . L 3 HOH B 11 161 26 HOH HOH . L 3 HOH B 12 162 33 HOH HOH . L 3 HOH B 13 163 35 HOH HOH . L 3 HOH B 14 164 36 HOH HOH . L 3 HOH B 15 165 37 HOH HOH . L 3 HOH B 16 166 40 HOH HOH . L 3 HOH B 17 167 41 HOH HOH . L 3 HOH B 18 168 44 HOH HOH . L 3 HOH B 19 169 45 HOH HOH . L 3 HOH B 20 170 46 HOH HOH . L 3 HOH B 21 171 47 HOH HOH . L 3 HOH B 22 172 48 HOH HOH . L 3 HOH B 23 173 49 HOH HOH . L 3 HOH B 24 174 50 HOH HOH . L 3 HOH B 25 175 54 HOH HOH . L 3 HOH B 26 176 55 HOH HOH . L 3 HOH B 27 177 57 HOH HOH . L 3 HOH B 28 178 58 HOH HOH . L 3 HOH B 29 179 64 HOH HOH . L 3 HOH B 30 180 70 HOH HOH . L 3 HOH B 31 181 71 HOH HOH . L 3 HOH B 32 182 72 HOH HOH . L 3 HOH B 33 183 75 HOH HOH . L 3 HOH B 34 184 77 HOH HOH . L 3 HOH B 35 185 78 HOH HOH . L 3 HOH B 36 186 80 HOH HOH . L 3 HOH B 37 187 81 HOH HOH . L 3 HOH B 38 188 82 HOH HOH . L 3 HOH B 39 189 84 HOH HOH . L 3 HOH B 40 190 85 HOH HOH . L 3 HOH B 41 191 86 HOH HOH . L 3 HOH B 42 192 88 HOH HOH . L 3 HOH B 43 193 90 HOH HOH . L 3 HOH B 44 194 92 HOH HOH . L 3 HOH B 45 195 98 HOH HOH . L 3 HOH B 46 196 101 HOH HOH . L 3 HOH B 47 197 102 HOH HOH . L 3 HOH B 48 198 104 HOH HOH . L 3 HOH B 49 199 107 HOH HOH . L 3 HOH B 50 200 108 HOH HOH . L 3 HOH B 51 201 112 HOH HOH . L 3 HOH B 52 202 117 HOH HOH . L 3 HOH B 53 203 118 HOH HOH . L 3 HOH B 54 204 119 HOH HOH . L 3 HOH B 55 205 122 HOH HOH . L 3 HOH B 56 206 125 HOH HOH . L 3 HOH B 57 207 126 HOH HOH . L 3 HOH B 58 208 129 HOH HOH . L 3 HOH B 59 209 130 HOH HOH . L 3 HOH B 60 210 131 HOH HOH . L 3 HOH B 61 211 134 HOH HOH . L 3 HOH B 62 212 135 HOH HOH . L 3 HOH B 63 213 136 HOH HOH . L 3 HOH B 64 214 137 HOH HOH . L 3 HOH B 65 215 139 HOH HOH . L 3 HOH B 66 216 140 HOH HOH . L 3 HOH B 67 217 141 HOH HOH . L 3 HOH B 68 218 143 HOH HOH . L 3 HOH B 69 219 146 HOH HOH . L 3 HOH B 70 220 147 HOH HOH . L 3 HOH B 71 221 148 HOH HOH . L 3 HOH B 72 222 151 HOH HOH . L 3 HOH B 73 223 152 HOH HOH . L 3 HOH B 74 224 153 HOH HOH . L 3 HOH B 75 225 155 HOH HOH . L 3 HOH B 76 226 156 HOH HOH . L 3 HOH B 77 227 158 HOH HOH . L 3 HOH B 78 228 160 HOH HOH . L 3 HOH B 79 229 164 HOH HOH . L 3 HOH B 80 230 167 HOH HOH . L 3 HOH B 81 231 169 HOH HOH . L 3 HOH B 82 232 171 HOH HOH . L 3 HOH B 83 233 174 HOH HOH . L 3 HOH B 84 234 178 HOH HOH . L 3 HOH B 85 235 179 HOH HOH . L 3 HOH B 86 236 182 HOH HOH . L 3 HOH B 87 237 183 HOH HOH . L 3 HOH B 88 238 185 HOH HOH . L 3 HOH B 89 239 186 HOH HOH . L 3 HOH B 90 240 187 HOH HOH . L 3 HOH B 91 241 188 HOH HOH . L 3 HOH B 92 242 189 HOH HOH . L 3 HOH B 93 243 190 HOH HOH . L 3 HOH B 94 244 191 HOH HOH . L 3 HOH B 95 245 193 HOH HOH . L 3 HOH B 96 246 194 HOH HOH . L 3 HOH B 97 247 195 HOH HOH . L 3 HOH B 98 248 197 HOH HOH . L 3 HOH B 99 249 200 HOH HOH . L 3 HOH B 100 250 202 HOH HOH . L 3 HOH B 101 251 205 HOH HOH . L 3 HOH B 102 252 208 HOH HOH . L 3 HOH B 103 253 211 HOH HOH . L 3 HOH B 104 254 215 HOH HOH . L 3 HOH B 105 255 219 HOH HOH . L 3 HOH B 106 256 221 HOH HOH . L 3 HOH B 107 257 222 HOH HOH . L 3 HOH B 108 258 223 HOH HOH . L 3 HOH B 109 259 225 HOH HOH . L 3 HOH B 110 260 227 HOH HOH . L 3 HOH B 111 261 228 HOH HOH . L 3 HOH B 112 262 229 HOH HOH . L 3 HOH B 113 263 231 HOH HOH . L 3 HOH B 114 264 232 HOH HOH . L 3 HOH B 115 265 235 HOH HOH . L 3 HOH B 116 266 236 HOH HOH . L 3 HOH B 117 267 237 HOH HOH . L 3 HOH B 118 268 239 HOH HOH . L 3 HOH B 119 269 240 HOH HOH . L 3 HOH B 120 270 247 HOH HOH . L 3 HOH B 121 271 249 HOH HOH . L 3 HOH B 122 272 250 HOH HOH . L 3 HOH B 123 273 251 HOH HOH . L 3 HOH B 124 274 253 HOH HOH . L 3 HOH B 125 275 254 HOH HOH . L 3 HOH B 126 276 260 HOH HOH . L 3 HOH B 127 277 262 HOH HOH . L 3 HOH B 128 278 265 HOH HOH . L 3 HOH B 129 279 266 HOH HOH . L 3 HOH B 130 280 267 HOH HOH . L 3 HOH B 131 281 268 HOH HOH . L 3 HOH B 132 282 272 HOH HOH . L 3 HOH B 133 283 274 HOH HOH . L 3 HOH B 134 284 275 HOH HOH . L 3 HOH B 135 285 277 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 2 1.321 2.398 16.44 1 24.11 ? C1 EDO 147 B 1 HETATM 2 O O1 EDO . . . G 2 0.917 3.399 17.368 1 25.63 ? O1 EDO 147 B 1 HETATM 3 C C2 EDO . . . G 2 1.166 2.898 14.996 1 26.76 ? C2 EDO 147 B 1 HETATM 4 O O2 EDO . . . G 2 -0.223 3.182 14.677 1 24.3 ? O2 EDO 147 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #