data_1VLI # _model_server_result.job_id OTzyn0YoeqrQpzlWns32ZA _model_server_result.datetime_utc '2024-12-21 13:20:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vli # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":374}' # _entry.id 1VLI # _exptl.entry_id 1VLI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1VLI _cell.length_a 70.578 _cell.length_b 70.578 _cell.length_c 205.359 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VLI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 A,B,C 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 136.906 3 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 205.359 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 64 A GLN 52 1_555 A N MSE 65 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 65 A MSE 53 1_555 A N PHE 66 A PHE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C ARG 70 A ARG 58 1_555 A N MSE 71 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 71 A MSE 59 1_555 A N TYR 72 A TYR 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C SER 95 A SER 83 1_555 A N MSE 96 A MSE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale6 A C MSE 96 A MSE 84 1_555 A N GLU 97 A GLU 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C GLU 97 A GLU 85 1_555 A N MSE 98 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 98 A MSE 86 1_555 A N PRO 99 A PRO 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 A C PRO 160 A PRO 148 1_555 A N MSE 161 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 161 A MSE 149 1_555 A N ILE 162 A ILE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C ILE 190 A ILE 178 1_555 A N MSE 191 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale12 A C MSE 191 A MSE 179 1_555 A N HIS 192 A HIS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale13 A C PRO 210 A PRO 198 1_555 A N MSE 211 A MSE 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C MSE 211 A MSE 199 1_555 A N LEU 212 A LEU 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale15 A C GLU 271 A GLU 259 1_555 A N MSE 272 A MSE 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale16 A C MSE 272 A MSE 260 1_555 A N VAL 273 A VAL 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A NE2 HIS 226 A HIS 214 1_555 B ZN ZN . A ZN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc2 A NE2 HIS 248 A HIS 236 1_555 B ZN ZN . A ZN 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 B ZN ZN . A ZN 374 1_555 C O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc4 B ZN ZN . A ZN 374 1_555 C O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1VLI _atom_sites.fract_transf_matrix[1][1] 0.014169 _atom_sites.fract_transf_matrix[1][2] 0.00818 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 374 1 ZN ZN . C 3 HOH A 1 375 2 HOH HOH . C 3 HOH A 2 376 3 HOH HOH . C 3 HOH A 3 377 4 HOH HOH . C 3 HOH A 4 378 5 HOH HOH . C 3 HOH A 5 379 6 HOH HOH . C 3 HOH A 6 380 7 HOH HOH . C 3 HOH A 7 381 8 HOH HOH . C 3 HOH A 8 382 9 HOH HOH . C 3 HOH A 9 383 10 HOH HOH . C 3 HOH A 10 384 11 HOH HOH . C 3 HOH A 11 385 12 HOH HOH . C 3 HOH A 12 386 13 HOH HOH . C 3 HOH A 13 387 14 HOH HOH . C 3 HOH A 14 388 15 HOH HOH . C 3 HOH A 15 389 16 HOH HOH . C 3 HOH A 16 390 17 HOH HOH . C 3 HOH A 17 391 18 HOH HOH . C 3 HOH A 18 392 19 HOH HOH . C 3 HOH A 19 393 20 HOH HOH . C 3 HOH A 20 394 21 HOH HOH . C 3 HOH A 21 395 22 HOH HOH . C 3 HOH A 22 396 23 HOH HOH . C 3 HOH A 23 397 24 HOH HOH . C 3 HOH A 24 398 25 HOH HOH . C 3 HOH A 25 399 26 HOH HOH . C 3 HOH A 26 400 27 HOH HOH . C 3 HOH A 27 401 28 HOH HOH . C 3 HOH A 28 402 29 HOH HOH . C 3 HOH A 29 403 30 HOH HOH . C 3 HOH A 30 404 31 HOH HOH . C 3 HOH A 31 405 32 HOH HOH . C 3 HOH A 32 406 33 HOH HOH . C 3 HOH A 33 407 34 HOH HOH . C 3 HOH A 34 408 35 HOH HOH . C 3 HOH A 35 409 36 HOH HOH . C 3 HOH A 36 410 37 HOH HOH . C 3 HOH A 37 411 38 HOH HOH . C 3 HOH A 38 412 39 HOH HOH . C 3 HOH A 39 413 40 HOH HOH . C 3 HOH A 40 414 41 HOH HOH . C 3 HOH A 41 415 42 HOH HOH . C 3 HOH A 42 416 43 HOH HOH . C 3 HOH A 43 417 44 HOH HOH . C 3 HOH A 44 418 45 HOH HOH . C 3 HOH A 45 419 46 HOH HOH . C 3 HOH A 46 420 47 HOH HOH . C 3 HOH A 47 421 48 HOH HOH . C 3 HOH A 48 422 49 HOH HOH . C 3 HOH A 49 423 50 HOH HOH . C 3 HOH A 50 424 51 HOH HOH . C 3 HOH A 51 425 52 HOH HOH . C 3 HOH A 52 426 53 HOH HOH . C 3 HOH A 53 427 54 HOH HOH . C 3 HOH A 54 428 55 HOH HOH . C 3 HOH A 55 429 56 HOH HOH . C 3 HOH A 56 430 57 HOH HOH . C 3 HOH A 57 431 58 HOH HOH . C 3 HOH A 58 432 59 HOH HOH . C 3 HOH A 59 433 60 HOH HOH . C 3 HOH A 60 434 61 HOH HOH . C 3 HOH A 61 435 62 HOH HOH . C 3 HOH A 62 436 63 HOH HOH . C 3 HOH A 63 437 64 HOH HOH . C 3 HOH A 64 438 65 HOH HOH . C 3 HOH A 65 439 66 HOH HOH . C 3 HOH A 66 440 67 HOH HOH . C 3 HOH A 67 441 68 HOH HOH . C 3 HOH A 68 442 69 HOH HOH . C 3 HOH A 69 443 70 HOH HOH . C 3 HOH A 70 444 71 HOH HOH . C 3 HOH A 71 445 72 HOH HOH . C 3 HOH A 72 446 73 HOH HOH . C 3 HOH A 73 447 74 HOH HOH . C 3 HOH A 74 448 75 HOH HOH . C 3 HOH A 75 449 76 HOH HOH . C 3 HOH A 76 450 77 HOH HOH . C 3 HOH A 77 451 78 HOH HOH . C 3 HOH A 78 452 79 HOH HOH . C 3 HOH A 79 453 80 HOH HOH . C 3 HOH A 80 454 81 HOH HOH . C 3 HOH A 81 455 82 HOH HOH . C 3 HOH A 82 456 83 HOH HOH . C 3 HOH A 83 457 84 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 3.455 _atom_site.Cartn_y 34.213 _atom_site.Cartn_z 81.53 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 57.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 374 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #