data_1VLV # _model_server_result.job_id Hnh4oIwLN3VY-6IzHsPz1w _model_server_result.datetime_utc '2025-09-07 21:26:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vlv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":314}' # _entry.id 1VLV # _exptl.entry_id 1VLV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VLV _cell.length_a 210.339 _cell.length_b 210.339 _cell.length_c 210.339 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VLV _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 210.339 0 210.339 3 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 210.339 210.339 4 'crystal symmetry operation' 28_565 x,-y+3/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 315.5085 105.1695 5 'crystal symmetry operation' 31_664 -z+1,-x+3/2,y-1/2 0 0 -1 -1 0 0 0 1 0 210.339 315.5085 -105.1695 6 'crystal symmetry operation' 33_554 y,z+1/2,x-1/2 0 1 0 0 0 1 1 0 0 0 105.1695 -105.1695 7 'crystal symmetry operation' 51_655 -x+3/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 315.5085 0 105.1695 8 'crystal symmetry operation' 53_554 z+1/2,x,y-1/2 0 0 1 1 0 0 0 1 0 105.1695 0 -105.1695 9 'crystal symmetry operation' 60_664 -y+3/2,-z+1,x-1/2 0 -1 0 0 0 -1 1 0 0 315.5085 210.339 -105.1695 10 'crystal symmetry operation' 74_665 -x+3/2,-y+3/2,z -1 0 0 0 -1 0 0 0 1 315.5085 315.5085 0 11 'crystal symmetry operation' 78_566 z+1/2,-x+3/2,-y+1 0 0 1 -1 0 0 0 -1 0 105.1695 315.5085 210.339 12 'crystal symmetry operation' 82_656 -y+3/2,z+1/2,-x+1 0 -1 0 0 0 1 -1 0 0 315.5085 105.1695 210.339 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1VLV _atom_sites.fract_transf_matrix[1][1] 0.004754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004754 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 314 1 PO4 PO4 . C 2 PO4 A 1 315 2 PO4 PO4 . D 2 PO4 A 1 316 3 PO4 PO4 . E 3 HOH A 1 317 4 HOH HOH . E 3 HOH A 2 318 5 HOH HOH . E 3 HOH A 3 319 6 HOH HOH . E 3 HOH A 4 320 7 HOH HOH . E 3 HOH A 5 321 8 HOH HOH . E 3 HOH A 6 322 9 HOH HOH . E 3 HOH A 7 323 10 HOH HOH . E 3 HOH A 8 324 11 HOH HOH . E 3 HOH A 9 325 12 HOH HOH . E 3 HOH A 10 326 13 HOH HOH . E 3 HOH A 11 327 14 HOH HOH . E 3 HOH A 12 328 15 HOH HOH . E 3 HOH A 13 329 16 HOH HOH . E 3 HOH A 14 330 17 HOH HOH . E 3 HOH A 15 331 18 HOH HOH . E 3 HOH A 16 332 19 HOH HOH . E 3 HOH A 17 333 20 HOH HOH . E 3 HOH A 18 334 21 HOH HOH . E 3 HOH A 19 335 22 HOH HOH . E 3 HOH A 20 336 23 HOH HOH . E 3 HOH A 21 337 24 HOH HOH . E 3 HOH A 22 338 25 HOH HOH . E 3 HOH A 23 339 26 HOH HOH . E 3 HOH A 24 340 27 HOH HOH . E 3 HOH A 25 341 28 HOH HOH . E 3 HOH A 26 342 29 HOH HOH . E 3 HOH A 27 343 30 HOH HOH . E 3 HOH A 28 344 31 HOH HOH . E 3 HOH A 29 345 32 HOH HOH . E 3 HOH A 30 346 33 HOH HOH . E 3 HOH A 31 347 34 HOH HOH . E 3 HOH A 32 348 35 HOH HOH . E 3 HOH A 33 349 36 HOH HOH . E 3 HOH A 34 350 37 HOH HOH . E 3 HOH A 35 351 38 HOH HOH . E 3 HOH A 36 352 39 HOH HOH . E 3 HOH A 37 353 40 HOH HOH . E 3 HOH A 38 354 41 HOH HOH . E 3 HOH A 39 355 42 HOH HOH . E 3 HOH A 40 356 43 HOH HOH . E 3 HOH A 41 357 44 HOH HOH . E 3 HOH A 42 358 45 HOH HOH . E 3 HOH A 43 359 46 HOH HOH . E 3 HOH A 44 360 47 HOH HOH . E 3 HOH A 45 361 48 HOH HOH . E 3 HOH A 46 362 49 HOH HOH . E 3 HOH A 47 363 50 HOH HOH . E 3 HOH A 48 364 51 HOH HOH . E 3 HOH A 49 365 52 HOH HOH . E 3 HOH A 50 366 53 HOH HOH . E 3 HOH A 51 367 54 HOH HOH . E 3 HOH A 52 368 55 HOH HOH . E 3 HOH A 53 369 56 HOH HOH . E 3 HOH A 54 370 57 HOH HOH . E 3 HOH A 55 371 58 HOH HOH . E 3 HOH A 56 372 59 HOH HOH . E 3 HOH A 57 373 60 HOH HOH . E 3 HOH A 58 374 61 HOH HOH . E 3 HOH A 59 375 62 HOH HOH . E 3 HOH A 60 376 63 HOH HOH . E 3 HOH A 61 377 64 HOH HOH . E 3 HOH A 62 378 65 HOH HOH . E 3 HOH A 63 379 66 HOH HOH . E 3 HOH A 64 380 67 HOH HOH . E 3 HOH A 65 381 68 HOH HOH . E 3 HOH A 66 382 69 HOH HOH . E 3 HOH A 67 383 70 HOH HOH . E 3 HOH A 68 384 71 HOH HOH . E 3 HOH A 69 385 72 HOH HOH . E 3 HOH A 70 386 73 HOH HOH . E 3 HOH A 71 387 74 HOH HOH . E 3 HOH A 72 388 75 HOH HOH . E 3 HOH A 73 389 76 HOH HOH . E 3 HOH A 74 390 77 HOH HOH . E 3 HOH A 75 391 78 HOH HOH . E 3 HOH A 76 392 79 HOH HOH . E 3 HOH A 77 393 80 HOH HOH . E 3 HOH A 78 394 81 HOH HOH . E 3 HOH A 79 395 82 HOH HOH . E 3 HOH A 80 396 83 HOH HOH . E 3 HOH A 81 397 84 HOH HOH . E 3 HOH A 82 398 85 HOH HOH . E 3 HOH A 83 399 86 HOH HOH . E 3 HOH A 84 400 87 HOH HOH . E 3 HOH A 85 401 88 HOH HOH . E 3 HOH A 86 402 89 HOH HOH . E 3 HOH A 87 403 90 HOH HOH . E 3 HOH A 88 404 91 HOH HOH . E 3 HOH A 89 405 92 HOH HOH . E 3 HOH A 90 406 93 HOH HOH . E 3 HOH A 91 407 94 HOH HOH . E 3 HOH A 92 408 95 HOH HOH . E 3 HOH A 93 409 96 HOH HOH . E 3 HOH A 94 410 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 187.226 152.324 79.374 1 79.27 ? P PO4 314 A 1 HETATM 2 O O1 PO4 . . . B 2 187.272 152.809 77.945 1 78.07 ? O1 PO4 314 A 1 HETATM 3 O O2 PO4 . . . B 2 188.668 152.212 79.827 1 79.67 ? O2 PO4 314 A 1 HETATM 4 O O3 PO4 . . . B 2 186.462 151.003 79.555 1 77.05 ? O3 PO4 314 A 1 HETATM 5 O O4 PO4 . . . B 2 186.519 153.368 80.21 1 78.76 ? O4 PO4 314 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #