data_1VM9
#
_model_server_result.job_id            Cazqp4zYzA2tFa7xWKUe_Q 
_model_server_result.datetime_utc      '2024-11-27 05:21:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vm9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":801}' 
#
_entry.id    1VM9 
#
_exptl.entry_id    1VM9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VM9 
_cell.length_a            44.51 
_cell.length_b            52.4 
_cell.length_c            83.556 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VM9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 44 A CYS 45 1_555 D FE1 FES . A FES 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc2 A ND1 HIS 46 A HIS 47 1_555 D FE2 FES . A FES 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc3 A O SER 52 A SER 53 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc4 A SG CYS 63 A CYS 64 1_555 D FE1 FES . A FES 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc5 A ND1 HIS 66 A HIS 67 1_555 D FE2 FES . A FES 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc6 A OD2 ASP 95 A ASP 96 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc7 A OD1 ASP 96 A ASP 97 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc8 B MG MG . A MG 901 1_555 H O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc9 B MG MG . A MG 901 1_555 H O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc10 B MG MG . A MG 901 1_555 H O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc11 B MG MG . A MG 901 1_555 H O HOH . A HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc12 B MG MG . A MG 901 1_555 H O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc13 C MG MG . A MG 902 1_555 H O HOH . A HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc14 C MG MG . A MG 902 1_555 H O HOH . A HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc15 C MG MG . A MG 902 1_555 H O HOH . A HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc16 C MG MG . A MG 902 1_555 H O HOH . A HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     1VM9 
_atom_sites.fract_transf_matrix[1][1]    0.022467 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019084 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011968 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 901 901 MG MG . 
C 2 MG A 1 902 902 MG MG . 
D 3 FES A 1 900 900 FES FES . 
E 4 EDO A 1 801 801 EDO EDO . 
F 4 EDO A 1 802 802 EDO EDO . 
G 4 EDO A 1 803 803 EDO EDO . 
H 5 HOH A 1 903 1 HOH HOH . 
H 5 HOH A 2 904 2 HOH HOH . 
H 5 HOH A 3 905 3 HOH HOH . 
H 5 HOH A 4 906 4 HOH HOH . 
H 5 HOH A 5 907 5 HOH HOH . 
H 5 HOH A 6 908 6 HOH HOH . 
H 5 HOH A 7 909 7 HOH HOH . 
H 5 HOH A 8 910 8 HOH HOH . 
H 5 HOH A 9 911 9 HOH HOH . 
H 5 HOH A 10 912 10 HOH HOH . 
H 5 HOH A 11 913 11 HOH HOH . 
H 5 HOH A 12 914 12 HOH HOH . 
H 5 HOH A 13 915 13 HOH HOH . 
H 5 HOH A 14 916 14 HOH HOH . 
H 5 HOH A 15 917 15 HOH HOH . 
H 5 HOH A 16 918 16 HOH HOH . 
H 5 HOH A 17 919 17 HOH HOH . 
H 5 HOH A 18 920 18 HOH HOH . 
H 5 HOH A 19 921 19 HOH HOH . 
H 5 HOH A 20 922 20 HOH HOH . 
H 5 HOH A 21 923 21 HOH HOH . 
H 5 HOH A 22 924 22 HOH HOH . 
H 5 HOH A 23 925 23 HOH HOH . 
H 5 HOH A 24 926 24 HOH HOH . 
H 5 HOH A 25 927 25 HOH HOH . 
H 5 HOH A 26 928 26 HOH HOH . 
H 5 HOH A 27 929 27 HOH HOH . 
H 5 HOH A 28 930 28 HOH HOH . 
H 5 HOH A 29 931 29 HOH HOH . 
H 5 HOH A 30 932 30 HOH HOH . 
H 5 HOH A 31 933 31 HOH HOH . 
H 5 HOH A 32 934 32 HOH HOH . 
H 5 HOH A 33 935 33 HOH HOH . 
H 5 HOH A 34 936 34 HOH HOH . 
H 5 HOH A 35 937 35 HOH HOH . 
H 5 HOH A 36 938 36 HOH HOH . 
H 5 HOH A 37 939 37 HOH HOH . 
H 5 HOH A 38 940 38 HOH HOH . 
H 5 HOH A 39 941 39 HOH HOH . 
H 5 HOH A 40 942 40 HOH HOH . 
H 5 HOH A 41 943 41 HOH HOH . 
H 5 HOH A 42 944 43 HOH HOH . 
H 5 HOH A 43 945 44 HOH HOH . 
H 5 HOH A 44 946 45 HOH HOH . 
H 5 HOH A 45 947 46 HOH HOH . 
H 5 HOH A 46 948 47 HOH HOH . 
H 5 HOH A 47 949 48 HOH HOH . 
H 5 HOH A 48 950 49 HOH HOH . 
H 5 HOH A 49 951 50 HOH HOH . 
H 5 HOH A 50 952 51 HOH HOH . 
H 5 HOH A 51 953 52 HOH HOH . 
H 5 HOH A 52 954 53 HOH HOH . 
H 5 HOH A 53 955 54 HOH HOH . 
H 5 HOH A 54 956 55 HOH HOH . 
H 5 HOH A 55 957 56 HOH HOH . 
H 5 HOH A 56 958 57 HOH HOH . 
H 5 HOH A 57 959 58 HOH HOH . 
H 5 HOH A 58 960 60 HOH HOH . 
H 5 HOH A 59 961 61 HOH HOH . 
H 5 HOH A 60 962 62 HOH HOH . 
H 5 HOH A 61 963 63 HOH HOH . 
H 5 HOH A 62 964 64 HOH HOH . 
H 5 HOH A 63 965 66 HOH HOH . 
H 5 HOH A 64 966 67 HOH HOH . 
H 5 HOH A 65 967 69 HOH HOH . 
H 5 HOH A 66 968 70 HOH HOH . 
H 5 HOH A 67 969 71 HOH HOH . 
H 5 HOH A 68 970 72 HOH HOH . 
H 5 HOH A 69 971 74 HOH HOH . 
H 5 HOH A 70 972 75 HOH HOH . 
H 5 HOH A 71 973 76 HOH HOH . 
H 5 HOH A 72 974 78 HOH HOH . 
H 5 HOH A 73 975 79 HOH HOH . 
H 5 HOH A 74 976 80 HOH HOH . 
H 5 HOH A 75 977 81 HOH HOH . 
H 5 HOH A 76 978 82 HOH HOH . 
H 5 HOH A 77 979 83 HOH HOH . 
H 5 HOH A 78 980 84 HOH HOH . 
H 5 HOH A 79 981 85 HOH HOH . 
H 5 HOH A 80 982 86 HOH HOH . 
H 5 HOH A 81 983 88 HOH HOH . 
H 5 HOH A 82 984 89 HOH HOH . 
H 5 HOH A 83 985 90 HOH HOH . 
H 5 HOH A 84 986 91 HOH HOH . 
H 5 HOH A 85 987 92 HOH HOH . 
H 5 HOH A 86 988 93 HOH HOH . 
H 5 HOH A 87 989 94 HOH HOH . 
H 5 HOH A 88 990 95 HOH HOH . 
H 5 HOH A 89 991 96 HOH HOH . 
H 5 HOH A 90 992 97 HOH HOH . 
H 5 HOH A 91 993 98 HOH HOH . 
H 5 HOH A 92 994 100 HOH HOH . 
H 5 HOH A 93 995 101 HOH HOH . 
H 5 HOH A 94 996 103 HOH HOH . 
H 5 HOH A 95 997 104 HOH HOH . 
H 5 HOH A 96 998 105 HOH HOH . 
H 5 HOH A 97 999 106 HOH HOH . 
H 5 HOH A 98 1000 107 HOH HOH . 
H 5 HOH A 99 1001 108 HOH HOH . 
H 5 HOH A 100 1002 109 HOH HOH . 
H 5 HOH A 101 1003 110 HOH HOH . 
H 5 HOH A 102 1004 111 HOH HOH . 
H 5 HOH A 103 1005 112 HOH HOH . 
H 5 HOH A 104 1006 113 HOH HOH . 
H 5 HOH A 105 1007 114 HOH HOH . 
H 5 HOH A 106 1008 115 HOH HOH . 
H 5 HOH A 107 1009 116 HOH HOH . 
H 5 HOH A 108 1010 118 HOH HOH . 
H 5 HOH A 109 1011 119 HOH HOH . 
H 5 HOH A 110 1012 120 HOH HOH . 
H 5 HOH A 111 1013 122 HOH HOH . 
H 5 HOH A 112 1014 126 HOH HOH . 
H 5 HOH A 113 1015 127 HOH HOH . 
H 5 HOH A 114 1016 128 HOH HOH . 
H 5 HOH A 115 1017 129 HOH HOH . 
H 5 HOH A 116 1018 133 HOH HOH . 
H 5 HOH A 117 1019 134 HOH HOH . 
H 5 HOH A 118 1020 135 HOH HOH . 
H 5 HOH A 119 1021 139 HOH HOH . 
H 5 HOH A 120 1022 144 HOH HOH . 
H 5 HOH A 121 1023 146 HOH HOH . 
H 5 HOH A 122 1024 147 HOH HOH . 
H 5 HOH A 123 1025 149 HOH HOH . 
H 5 HOH A 124 1026 151 HOH HOH . 
H 5 HOH A 125 1027 152 HOH HOH . 
H 5 HOH A 126 1028 153 HOH HOH . 
H 5 HOH A 127 1029 155 HOH HOH . 
H 5 HOH A 128 1030 157 HOH HOH . 
H 5 HOH A 129 1031 160 HOH HOH . 
H 5 HOH A 130 1032 161 HOH HOH . 
H 5 HOH A 131 1033 162 HOH HOH . 
H 5 HOH A 132 1034 163 HOH HOH . 
H 5 HOH A 133 1035 164 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 10.009 18.731 17.243 1 40.57 ? C1 EDO 801 A 1 
HETATM 2 O O1 EDO . . . E 4 9.65 19.614 18.282 1 43.29 ? O1 EDO 801 A 1 
HETATM 3 C C2 EDO . . . E 4 10.77 17.629 17.914 1 39.5 ? C2 EDO 801 A 1 
HETATM 4 O O2 EDO . . . E 4 12.136 17.917 17.772 1 38.51 ? O2 EDO 801 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           4 
#