data_1VM9 # _model_server_result.job_id i2UuvuYYh4jzPghcEfetKA _model_server_result.datetime_utc '2024-11-27 06:13:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 1VM9 # _exptl.entry_id 1VM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VM9 _cell.length_a 44.51 _cell.length_b 52.4 _cell.length_c 83.556 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 44 A CYS 45 1_555 D FE1 FES . A FES 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A ND1 HIS 46 A HIS 47 1_555 D FE2 FES . A FES 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 A O SER 52 A SER 53 1_555 B MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc4 A SG CYS 63 A CYS 64 1_555 D FE1 FES . A FES 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 A ND1 HIS 66 A HIS 67 1_555 D FE2 FES . A FES 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc6 A OD2 ASP 95 A ASP 96 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc7 A OD1 ASP 96 A ASP 97 1_555 C MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc8 B MG MG . A MG 901 1_555 H O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc9 B MG MG . A MG 901 1_555 H O HOH . A HOH 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc10 B MG MG . A MG 901 1_555 H O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc11 B MG MG . A MG 901 1_555 H O HOH . A HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc12 B MG MG . A MG 901 1_555 H O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc13 C MG MG . A MG 902 1_555 H O HOH . A HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc14 C MG MG . A MG 902 1_555 H O HOH . A HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc15 C MG MG . A MG 902 1_555 H O HOH . A HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc16 C MG MG . A MG 902 1_555 H O HOH . A HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 92 n n FE1 S2 FES sing 93 n n FE2 S1 FES sing 94 n n FE2 S2 FES sing 95 n n # _atom_sites.entry_id 1VM9 _atom_sites.fract_transf_matrix[1][1] 0.022467 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 901 901 MG MG . C 2 MG A 1 902 902 MG MG . D 3 FES A 1 900 900 FES FES . E 4 EDO A 1 801 801 EDO EDO . F 4 EDO A 1 802 802 EDO EDO . G 4 EDO A 1 803 803 EDO EDO . H 5 HOH A 1 903 1 HOH HOH . H 5 HOH A 2 904 2 HOH HOH . H 5 HOH A 3 905 3 HOH HOH . H 5 HOH A 4 906 4 HOH HOH . H 5 HOH A 5 907 5 HOH HOH . H 5 HOH A 6 908 6 HOH HOH . H 5 HOH A 7 909 7 HOH HOH . H 5 HOH A 8 910 8 HOH HOH . H 5 HOH A 9 911 9 HOH HOH . H 5 HOH A 10 912 10 HOH HOH . H 5 HOH A 11 913 11 HOH HOH . H 5 HOH A 12 914 12 HOH HOH . H 5 HOH A 13 915 13 HOH HOH . H 5 HOH A 14 916 14 HOH HOH . H 5 HOH A 15 917 15 HOH HOH . H 5 HOH A 16 918 16 HOH HOH . H 5 HOH A 17 919 17 HOH HOH . H 5 HOH A 18 920 18 HOH HOH . H 5 HOH A 19 921 19 HOH HOH . H 5 HOH A 20 922 20 HOH HOH . H 5 HOH A 21 923 21 HOH HOH . H 5 HOH A 22 924 22 HOH HOH . H 5 HOH A 23 925 23 HOH HOH . H 5 HOH A 24 926 24 HOH HOH . H 5 HOH A 25 927 25 HOH HOH . H 5 HOH A 26 928 26 HOH HOH . H 5 HOH A 27 929 27 HOH HOH . H 5 HOH A 28 930 28 HOH HOH . H 5 HOH A 29 931 29 HOH HOH . H 5 HOH A 30 932 30 HOH HOH . H 5 HOH A 31 933 31 HOH HOH . H 5 HOH A 32 934 32 HOH HOH . H 5 HOH A 33 935 33 HOH HOH . H 5 HOH A 34 936 34 HOH HOH . H 5 HOH A 35 937 35 HOH HOH . H 5 HOH A 36 938 36 HOH HOH . H 5 HOH A 37 939 37 HOH HOH . H 5 HOH A 38 940 38 HOH HOH . H 5 HOH A 39 941 39 HOH HOH . H 5 HOH A 40 942 40 HOH HOH . H 5 HOH A 41 943 41 HOH HOH . H 5 HOH A 42 944 43 HOH HOH . H 5 HOH A 43 945 44 HOH HOH . H 5 HOH A 44 946 45 HOH HOH . H 5 HOH A 45 947 46 HOH HOH . H 5 HOH A 46 948 47 HOH HOH . H 5 HOH A 47 949 48 HOH HOH . H 5 HOH A 48 950 49 HOH HOH . H 5 HOH A 49 951 50 HOH HOH . H 5 HOH A 50 952 51 HOH HOH . H 5 HOH A 51 953 52 HOH HOH . H 5 HOH A 52 954 53 HOH HOH . H 5 HOH A 53 955 54 HOH HOH . H 5 HOH A 54 956 55 HOH HOH . H 5 HOH A 55 957 56 HOH HOH . H 5 HOH A 56 958 57 HOH HOH . H 5 HOH A 57 959 58 HOH HOH . H 5 HOH A 58 960 60 HOH HOH . H 5 HOH A 59 961 61 HOH HOH . H 5 HOH A 60 962 62 HOH HOH . H 5 HOH A 61 963 63 HOH HOH . H 5 HOH A 62 964 64 HOH HOH . H 5 HOH A 63 965 66 HOH HOH . H 5 HOH A 64 966 67 HOH HOH . H 5 HOH A 65 967 69 HOH HOH . H 5 HOH A 66 968 70 HOH HOH . H 5 HOH A 67 969 71 HOH HOH . H 5 HOH A 68 970 72 HOH HOH . H 5 HOH A 69 971 74 HOH HOH . H 5 HOH A 70 972 75 HOH HOH . H 5 HOH A 71 973 76 HOH HOH . H 5 HOH A 72 974 78 HOH HOH . H 5 HOH A 73 975 79 HOH HOH . H 5 HOH A 74 976 80 HOH HOH . H 5 HOH A 75 977 81 HOH HOH . H 5 HOH A 76 978 82 HOH HOH . H 5 HOH A 77 979 83 HOH HOH . H 5 HOH A 78 980 84 HOH HOH . H 5 HOH A 79 981 85 HOH HOH . H 5 HOH A 80 982 86 HOH HOH . H 5 HOH A 81 983 88 HOH HOH . H 5 HOH A 82 984 89 HOH HOH . H 5 HOH A 83 985 90 HOH HOH . H 5 HOH A 84 986 91 HOH HOH . H 5 HOH A 85 987 92 HOH HOH . H 5 HOH A 86 988 93 HOH HOH . H 5 HOH A 87 989 94 HOH HOH . H 5 HOH A 88 990 95 HOH HOH . H 5 HOH A 89 991 96 HOH HOH . H 5 HOH A 90 992 97 HOH HOH . H 5 HOH A 91 993 98 HOH HOH . H 5 HOH A 92 994 100 HOH HOH . H 5 HOH A 93 995 101 HOH HOH . H 5 HOH A 94 996 103 HOH HOH . H 5 HOH A 95 997 104 HOH HOH . H 5 HOH A 96 998 105 HOH HOH . H 5 HOH A 97 999 106 HOH HOH . H 5 HOH A 98 1000 107 HOH HOH . H 5 HOH A 99 1001 108 HOH HOH . H 5 HOH A 100 1002 109 HOH HOH . H 5 HOH A 101 1003 110 HOH HOH . H 5 HOH A 102 1004 111 HOH HOH . H 5 HOH A 103 1005 112 HOH HOH . H 5 HOH A 104 1006 113 HOH HOH . H 5 HOH A 105 1007 114 HOH HOH . H 5 HOH A 106 1008 115 HOH HOH . H 5 HOH A 107 1009 116 HOH HOH . H 5 HOH A 108 1010 118 HOH HOH . H 5 HOH A 109 1011 119 HOH HOH . H 5 HOH A 110 1012 120 HOH HOH . H 5 HOH A 111 1013 122 HOH HOH . H 5 HOH A 112 1014 126 HOH HOH . H 5 HOH A 113 1015 127 HOH HOH . H 5 HOH A 114 1016 128 HOH HOH . H 5 HOH A 115 1017 129 HOH HOH . H 5 HOH A 116 1018 133 HOH HOH . H 5 HOH A 117 1019 134 HOH HOH . H 5 HOH A 118 1020 135 HOH HOH . H 5 HOH A 119 1021 139 HOH HOH . H 5 HOH A 120 1022 144 HOH HOH . H 5 HOH A 121 1023 146 HOH HOH . H 5 HOH A 122 1024 147 HOH HOH . H 5 HOH A 123 1025 149 HOH HOH . H 5 HOH A 124 1026 151 HOH HOH . H 5 HOH A 125 1027 152 HOH HOH . H 5 HOH A 126 1028 153 HOH HOH . H 5 HOH A 127 1029 155 HOH HOH . H 5 HOH A 128 1030 157 HOH HOH . H 5 HOH A 129 1031 160 HOH HOH . H 5 HOH A 130 1032 161 HOH HOH . H 5 HOH A 131 1033 162 HOH HOH . H 5 HOH A 132 1034 163 HOH HOH . H 5 HOH A 133 1035 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . D 3 8.857 9.484 21.245 1 15.48 ? FE1 FES 900 A 1 HETATM 2 FE FE2 FES . . . D 3 7.587 8.027 19.385 1 18.1 ? FE2 FES 900 A 1 HETATM 3 S S1 FES . . . D 3 9.565 7.635 20.262 1 17.31 ? S1 FES 900 A 1 HETATM 4 S S2 FES . . . D 3 6.969 9.973 20.292 1 15.97 ? S2 FES 900 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #