data_1VMB # _model_server_result.job_id 5XOeb2MZoOyQ33wgO3lKmA _model_server_result.datetime_utc '2025-09-09 08:43:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":130}' # _entry.id 1VMB # _exptl.entry_id 1VMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VMB _cell.length_a 60.815 _cell.length_b 60.815 _cell.length_c 76.543 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 1VMB _atom_sites.fract_transf_matrix[1][1] 0.016443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 129 1 EDO EDO . C 2 EDO A 1 130 2 EDO EDO . D 3 HOH A 1 131 3 HOH HOH . D 3 HOH A 2 132 4 HOH HOH . D 3 HOH A 3 133 5 HOH HOH . D 3 HOH A 4 134 6 HOH HOH . D 3 HOH A 5 135 7 HOH HOH . D 3 HOH A 6 136 8 HOH HOH . D 3 HOH A 7 137 9 HOH HOH . D 3 HOH A 8 138 10 HOH HOH . D 3 HOH A 9 139 11 HOH HOH . D 3 HOH A 10 140 12 HOH HOH . D 3 HOH A 11 141 13 HOH HOH . D 3 HOH A 12 142 14 HOH HOH . D 3 HOH A 13 143 15 HOH HOH . D 3 HOH A 14 144 16 HOH HOH . D 3 HOH A 15 145 17 HOH HOH . D 3 HOH A 16 146 18 HOH HOH . D 3 HOH A 17 147 19 HOH HOH . D 3 HOH A 18 148 20 HOH HOH . D 3 HOH A 19 149 21 HOH HOH . D 3 HOH A 20 150 22 HOH HOH . D 3 HOH A 21 151 23 HOH HOH . D 3 HOH A 22 152 24 HOH HOH . D 3 HOH A 23 153 25 HOH HOH . D 3 HOH A 24 154 26 HOH HOH . D 3 HOH A 25 155 27 HOH HOH . D 3 HOH A 26 156 28 HOH HOH . D 3 HOH A 27 157 29 HOH HOH . D 3 HOH A 28 158 30 HOH HOH . D 3 HOH A 29 159 31 HOH HOH . D 3 HOH A 30 160 32 HOH HOH . D 3 HOH A 31 161 33 HOH HOH . D 3 HOH A 32 162 34 HOH HOH . D 3 HOH A 33 163 35 HOH HOH . D 3 HOH A 34 164 36 HOH HOH . D 3 HOH A 35 165 37 HOH HOH . D 3 HOH A 36 166 38 HOH HOH . D 3 HOH A 37 167 39 HOH HOH . D 3 HOH A 38 168 40 HOH HOH . D 3 HOH A 39 169 41 HOH HOH . D 3 HOH A 40 170 42 HOH HOH . D 3 HOH A 41 171 43 HOH HOH . D 3 HOH A 42 172 44 HOH HOH . D 3 HOH A 43 173 45 HOH HOH . D 3 HOH A 44 174 46 HOH HOH . D 3 HOH A 45 175 47 HOH HOH . D 3 HOH A 46 176 48 HOH HOH . D 3 HOH A 47 177 49 HOH HOH . D 3 HOH A 48 178 50 HOH HOH . D 3 HOH A 49 179 51 HOH HOH . D 3 HOH A 50 180 52 HOH HOH . D 3 HOH A 51 181 53 HOH HOH . D 3 HOH A 52 182 54 HOH HOH . D 3 HOH A 53 183 55 HOH HOH . D 3 HOH A 54 184 56 HOH HOH . D 3 HOH A 55 185 57 HOH HOH . D 3 HOH A 56 186 58 HOH HOH . D 3 HOH A 57 187 59 HOH HOH . D 3 HOH A 58 188 60 HOH HOH . D 3 HOH A 59 189 61 HOH HOH . D 3 HOH A 60 190 62 HOH HOH . D 3 HOH A 61 191 63 HOH HOH . D 3 HOH A 62 192 64 HOH HOH . D 3 HOH A 63 193 65 HOH HOH . D 3 HOH A 64 194 66 HOH HOH . D 3 HOH A 65 195 67 HOH HOH . D 3 HOH A 66 196 68 HOH HOH . D 3 HOH A 67 197 69 HOH HOH . D 3 HOH A 68 198 70 HOH HOH . D 3 HOH A 69 199 71 HOH HOH . D 3 HOH A 70 200 72 HOH HOH . D 3 HOH A 71 201 73 HOH HOH . D 3 HOH A 72 202 74 HOH HOH . D 3 HOH A 73 203 75 HOH HOH . D 3 HOH A 74 204 76 HOH HOH . D 3 HOH A 75 205 77 HOH HOH . D 3 HOH A 76 206 78 HOH HOH . D 3 HOH A 77 207 79 HOH HOH . D 3 HOH A 78 208 80 HOH HOH . D 3 HOH A 79 209 81 HOH HOH . D 3 HOH A 80 210 82 HOH HOH . D 3 HOH A 81 211 83 HOH HOH . D 3 HOH A 82 212 84 HOH HOH . D 3 HOH A 83 213 85 HOH HOH . D 3 HOH A 84 214 86 HOH HOH . D 3 HOH A 85 215 87 HOH HOH . D 3 HOH A 86 216 88 HOH HOH . D 3 HOH A 87 217 89 HOH HOH . D 3 HOH A 88 218 90 HOH HOH . D 3 HOH A 89 219 91 HOH HOH . D 3 HOH A 90 220 92 HOH HOH . D 3 HOH A 91 221 93 HOH HOH . D 3 HOH A 92 222 94 HOH HOH . D 3 HOH A 93 223 95 HOH HOH . D 3 HOH A 94 224 96 HOH HOH . D 3 HOH A 95 225 97 HOH HOH . D 3 HOH A 96 226 98 HOH HOH . D 3 HOH A 97 227 99 HOH HOH . D 3 HOH A 98 228 100 HOH HOH . D 3 HOH A 99 229 101 HOH HOH . D 3 HOH A 100 230 102 HOH HOH . D 3 HOH A 101 231 103 HOH HOH . D 3 HOH A 102 232 104 HOH HOH . D 3 HOH A 103 233 105 HOH HOH . D 3 HOH A 104 234 106 HOH HOH . D 3 HOH A 105 235 107 HOH HOH . D 3 HOH A 106 236 108 HOH HOH . D 3 HOH A 107 237 109 HOH HOH . D 3 HOH A 108 238 110 HOH HOH . D 3 HOH A 109 239 111 HOH HOH . D 3 HOH A 110 240 112 HOH HOH . D 3 HOH A 111 241 113 HOH HOH . D 3 HOH A 112 242 114 HOH HOH . D 3 HOH A 113 243 115 HOH HOH . D 3 HOH A 114 244 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 33.902 15.95 23.75 1 29.94 ? C1 EDO 130 A 1 HETATM 2 O O1 EDO . . . C 2 32.574 16.262 24.141 1 28.08 ? O1 EDO 130 A 1 HETATM 3 C C2 EDO . . . C 2 34.874 16.005 24.946 1 28.94 ? C2 EDO 130 A 1 HETATM 4 O O2 EDO . . . C 2 35.126 17.362 25.379 1 23.8 ? O2 EDO 130 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #