data_1VMG # _model_server_result.job_id 9zaqEnN7rsj8Ld1PQ8Y_ZQ _model_server_result.datetime_utc '2024-11-06 02:16:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":84}' # _entry.id 1VMG # _exptl.entry_id 1VMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 6.941 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LITHIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VMG _cell.length_a 79.749 _cell.length_b 79.749 _cell.length_c 95.909 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2 A,B,C,D 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 79.749 79.749 0 3 'crystal symmetry operation' 10_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 159.498 0 0 4 'crystal symmetry operation' 15_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 79.749 -79.749 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 13 A MSE 1 1_555 A N ASP 14 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C LYS 23 A LYS 11 1_555 A N MSE 24 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C MSE 24 A MSE 12 1_555 A N LYS 25 A LYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C GLU 26 A GLU 14 1_555 A N MSE 27 A MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 A C MSE 27 A MSE 15 1_555 A N TYR 28 A TYR 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OE1 GLU 47 A GLU 35 1_555 B LI LI . A LI 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc2 A OE1 GLU 66 A GLU 54 1_555 B LI LI . A LI 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc3 A OD2 ASP 69 A ASP 57 1_555 B LI LI . A LI 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc4 B LI LI . A LI 84 1_555 D O HOH . A HOH 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.674 ? # _chem_comp.formula 'Li 1' _chem_comp.formula_weight 6.941 _chem_comp.id LI _chem_comp.mon_nstd_flag . _chem_comp.name 'LITHIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1VMG _atom_sites.fract_transf_matrix[1][1] 0.012539 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI A 1 84 1 LI LI . C 3 UNL A 1 85 2 UNL UNL . D 4 HOH A 1 86 3 HOH HOH . D 4 HOH A 2 87 4 HOH HOH . D 4 HOH A 3 88 5 HOH HOH . D 4 HOH A 4 89 6 HOH HOH . D 4 HOH A 5 90 7 HOH HOH . D 4 HOH A 6 91 8 HOH HOH . D 4 HOH A 7 92 9 HOH HOH . D 4 HOH A 8 93 10 HOH HOH . D 4 HOH A 9 94 11 HOH HOH . D 4 HOH A 10 95 12 HOH HOH . D 4 HOH A 11 96 13 HOH HOH . D 4 HOH A 12 97 14 HOH HOH . D 4 HOH A 13 98 15 HOH HOH . D 4 HOH A 14 99 16 HOH HOH . D 4 HOH A 15 100 17 HOH HOH . D 4 HOH A 16 101 18 HOH HOH . D 4 HOH A 17 102 19 HOH HOH . D 4 HOH A 18 103 20 HOH HOH . D 4 HOH A 19 104 21 HOH HOH . D 4 HOH A 20 105 22 HOH HOH . D 4 HOH A 21 106 23 HOH HOH . D 4 HOH A 22 107 24 HOH HOH . D 4 HOH A 23 108 25 HOH HOH . D 4 HOH A 24 109 26 HOH HOH . D 4 HOH A 25 110 27 HOH HOH . D 4 HOH A 26 111 28 HOH HOH . D 4 HOH A 27 112 29 HOH HOH . D 4 HOH A 28 113 30 HOH HOH . D 4 HOH A 29 114 31 HOH HOH . D 4 HOH A 30 115 32 HOH HOH . D 4 HOH A 31 116 33 HOH HOH . D 4 HOH A 32 117 34 HOH HOH . D 4 HOH A 33 118 35 HOH HOH . D 4 HOH A 34 119 36 HOH HOH . D 4 HOH A 35 120 37 HOH HOH . D 4 HOH A 36 121 38 HOH HOH . D 4 HOH A 37 122 39 HOH HOH . D 4 HOH A 38 123 40 HOH HOH . D 4 HOH A 39 124 41 HOH HOH . D 4 HOH A 40 125 42 HOH HOH . D 4 HOH A 41 126 43 HOH HOH . D 4 HOH A 42 127 44 HOH HOH . D 4 HOH A 43 128 45 HOH HOH . D 4 HOH A 44 129 46 HOH HOH . D 4 HOH A 45 130 47 HOH HOH . D 4 HOH A 46 131 48 HOH HOH . D 4 HOH A 47 132 49 HOH HOH . D 4 HOH A 48 133 50 HOH HOH . D 4 HOH A 49 134 51 HOH HOH . D 4 HOH A 50 135 52 HOH HOH . D 4 HOH A 51 136 53 HOH HOH . D 4 HOH A 52 137 54 HOH HOH . D 4 HOH A 53 138 55 HOH HOH . D 4 HOH A 54 139 56 HOH HOH . D 4 HOH A 55 140 57 HOH HOH . D 4 HOH A 56 141 58 HOH HOH . D 4 HOH A 57 142 59 HOH HOH . D 4 HOH A 58 143 60 HOH HOH . D 4 HOH A 59 144 61 HOH HOH . D 4 HOH A 60 145 62 HOH HOH . D 4 HOH A 61 146 63 HOH HOH . D 4 HOH A 62 147 64 HOH HOH . D 4 HOH A 63 148 65 HOH HOH . D 4 HOH A 64 149 66 HOH HOH . D 4 HOH A 65 150 67 HOH HOH . D 4 HOH A 66 151 68 HOH HOH . D 4 HOH A 67 152 69 HOH HOH . D 4 HOH A 68 153 70 HOH HOH . D 4 HOH A 69 154 71 HOH HOH . D 4 HOH A 70 155 72 HOH HOH . D 4 HOH A 71 156 73 HOH HOH . D 4 HOH A 72 157 74 HOH HOH . D 4 HOH A 73 158 75 HOH HOH . D 4 HOH A 74 159 76 HOH HOH . D 4 HOH A 75 160 77 HOH HOH . D 4 HOH A 76 161 78 HOH HOH . D 4 HOH A 77 162 79 HOH HOH . D 4 HOH A 78 163 80 HOH HOH . D 4 HOH A 79 164 81 HOH HOH . D 4 HOH A 80 165 82 HOH HOH . D 4 HOH A 81 166 83 HOH HOH . D 4 HOH A 82 167 84 HOH HOH . D 4 HOH A 83 168 85 HOH HOH . D 4 HOH A 84 169 86 HOH HOH . D 4 HOH A 85 170 87 HOH HOH . D 4 HOH A 86 171 88 HOH HOH . D 4 HOH A 87 172 89 HOH HOH . D 4 HOH A 88 173 90 HOH HOH . D 4 HOH A 89 174 91 HOH HOH . D 4 HOH A 90 175 92 HOH HOH . D 4 HOH A 91 176 93 HOH HOH . D 4 HOH A 92 177 94 HOH HOH . D 4 HOH A 93 178 95 HOH HOH . D 4 HOH A 94 179 96 HOH HOH . D 4 HOH A 95 180 97 HOH HOH . D 4 HOH A 96 181 98 HOH HOH . D 4 HOH A 97 182 99 HOH HOH . D 4 HOH A 98 183 100 HOH HOH . D 4 HOH A 99 184 101 HOH HOH . D 4 HOH A 100 185 102 HOH HOH . D 4 HOH A 101 186 103 HOH HOH . D 4 HOH A 102 187 104 HOH HOH . D 4 HOH A 103 188 105 HOH HOH . D 4 HOH A 104 189 106 HOH HOH . D 4 HOH A 105 190 107 HOH HOH . D 4 HOH A 106 191 108 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol LI _atom_site.label_atom_id LI _atom_site.label_comp_id LI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 66.02 _atom_site.Cartn_y -2.384 _atom_site.Cartn_z 0.89 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 6.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id LI _atom_site.auth_comp_id LI _atom_site.auth_seq_id 84 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #