data_1VMI
#
_model_server_result.job_id            UjJlHuoagcS1WL_fV7W4jA 
_model_server_result.datetime_utc      '2024-11-05 01:24:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vmi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    1VMI 
#
_exptl.entry_id    1VMI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1VMI 
_cell.length_a            95.307 
_cell.length_b            95.307 
_cell.length_c            175.512 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VMI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 87.756 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 73 A ALA 61 1_555 A N MSE 74 A MSE 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C MSE 74 A MSE 62 1_555 A N ASP 75 A ASP 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 A C ALA 87 A ALA 75 1_555 A N MSE 88 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C MSE 88 A MSE 76 1_555 A N ARG 89 A ARG 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C LEU 116 A LEU 104 1_555 A N MSE 117 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale6 A C MSE 117 A MSE 105 1_555 A N PHE 118 A PHE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale7 A C ALA 121 A ALA 109 1_555 A N MSE 122 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 A C MSE 122 A MSE 110 1_555 A N VAL 123 A VAL 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale9 A C LEU 164 A LEU 152 1_555 A N MSE 165 A MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 A C MSE 165 A MSE 153 1_555 A N LEU 166 A LEU 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale11 A C ALA 212 A ALA 200 1_555 A N MSE 213 A MSE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale12 A C MSE 213 A MSE 201 1_555 A N LEU 214 A LEU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 A C VAL 276 A VAL 264 1_555 A N MSE 277 A MSE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale14 A C MSE 277 A MSE 265 1_555 A N VAL 278 A VAL 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale15 A C PRO 311 A PRO 299 1_555 A N MSE 312 A MSE 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale16 A C MSE 312 A MSE 300 1_555 A N HIS 313 A HIS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1VMI 
_atom_sites.fract_transf_matrix[1][1]    0.010492 
_atom_sites.fract_transf_matrix[1][2]    0.006058 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 1 1 GOL GOL . 
C 2 GOL A 1 344 2 GOL GOL . 
D 3 HOH A 1 345 3 HOH HOH . 
D 3 HOH A 2 346 4 HOH HOH . 
D 3 HOH A 3 347 5 HOH HOH . 
D 3 HOH A 4 348 6 HOH HOH . 
D 3 HOH A 5 349 7 HOH HOH . 
D 3 HOH A 6 350 8 HOH HOH . 
D 3 HOH A 7 351 9 HOH HOH . 
D 3 HOH A 8 352 10 HOH HOH . 
D 3 HOH A 9 353 11 HOH HOH . 
D 3 HOH A 10 354 12 HOH HOH . 
D 3 HOH A 11 355 13 HOH HOH . 
D 3 HOH A 12 356 14 HOH HOH . 
D 3 HOH A 13 357 15 HOH HOH . 
D 3 HOH A 14 358 16 HOH HOH . 
D 3 HOH A 15 359 17 HOH HOH . 
D 3 HOH A 16 360 18 HOH HOH . 
D 3 HOH A 17 361 19 HOH HOH . 
D 3 HOH A 18 362 20 HOH HOH . 
D 3 HOH A 19 363 21 HOH HOH . 
D 3 HOH A 20 364 22 HOH HOH . 
D 3 HOH A 21 365 23 HOH HOH . 
D 3 HOH A 22 366 24 HOH HOH . 
D 3 HOH A 23 367 25 HOH HOH . 
D 3 HOH A 24 368 26 HOH HOH . 
D 3 HOH A 25 369 27 HOH HOH . 
D 3 HOH A 26 370 28 HOH HOH . 
D 3 HOH A 27 371 29 HOH HOH . 
D 3 HOH A 28 372 30 HOH HOH . 
D 3 HOH A 29 373 31 HOH HOH . 
D 3 HOH A 30 374 32 HOH HOH . 
D 3 HOH A 31 375 33 HOH HOH . 
D 3 HOH A 32 376 34 HOH HOH . 
D 3 HOH A 33 377 35 HOH HOH . 
D 3 HOH A 34 378 36 HOH HOH . 
D 3 HOH A 35 379 37 HOH HOH . 
D 3 HOH A 36 380 38 HOH HOH . 
D 3 HOH A 37 381 39 HOH HOH . 
D 3 HOH A 38 382 40 HOH HOH . 
D 3 HOH A 39 383 41 HOH HOH . 
D 3 HOH A 40 384 42 HOH HOH . 
D 3 HOH A 41 385 43 HOH HOH . 
D 3 HOH A 42 386 44 HOH HOH . 
D 3 HOH A 43 387 45 HOH HOH . 
D 3 HOH A 44 388 46 HOH HOH . 
D 3 HOH A 45 389 47 HOH HOH . 
D 3 HOH A 46 390 48 HOH HOH . 
D 3 HOH A 47 391 49 HOH HOH . 
D 3 HOH A 48 392 50 HOH HOH . 
D 3 HOH A 49 393 51 HOH HOH . 
D 3 HOH A 50 394 52 HOH HOH . 
D 3 HOH A 51 395 53 HOH HOH . 
D 3 HOH A 52 396 54 HOH HOH . 
D 3 HOH A 53 397 55 HOH HOH . 
D 3 HOH A 54 398 56 HOH HOH . 
D 3 HOH A 55 399 57 HOH HOH . 
D 3 HOH A 56 400 58 HOH HOH . 
D 3 HOH A 57 401 59 HOH HOH . 
D 3 HOH A 58 402 60 HOH HOH . 
D 3 HOH A 59 403 61 HOH HOH . 
D 3 HOH A 60 404 62 HOH HOH . 
D 3 HOH A 61 405 63 HOH HOH . 
D 3 HOH A 62 406 64 HOH HOH . 
D 3 HOH A 63 407 65 HOH HOH . 
D 3 HOH A 64 408 66 HOH HOH . 
D 3 HOH A 65 409 67 HOH HOH . 
D 3 HOH A 66 410 68 HOH HOH . 
D 3 HOH A 67 411 69 HOH HOH . 
D 3 HOH A 68 412 70 HOH HOH . 
D 3 HOH A 69 413 71 HOH HOH . 
D 3 HOH A 70 414 72 HOH HOH . 
D 3 HOH A 71 415 73 HOH HOH . 
D 3 HOH A 72 416 74 HOH HOH . 
D 3 HOH A 73 417 75 HOH HOH . 
D 3 HOH A 74 418 76 HOH HOH . 
D 3 HOH A 75 419 77 HOH HOH . 
D 3 HOH A 76 420 78 HOH HOH . 
D 3 HOH A 77 421 79 HOH HOH . 
D 3 HOH A 78 422 80 HOH HOH . 
D 3 HOH A 79 423 81 HOH HOH . 
D 3 HOH A 80 424 82 HOH HOH . 
D 3 HOH A 81 425 83 HOH HOH . 
D 3 HOH A 82 426 84 HOH HOH . 
D 3 HOH A 83 427 85 HOH HOH . 
D 3 HOH A 84 428 86 HOH HOH . 
D 3 HOH A 85 429 87 HOH HOH . 
D 3 HOH A 86 430 88 HOH HOH . 
D 3 HOH A 87 431 89 HOH HOH . 
D 3 HOH A 88 432 90 HOH HOH . 
D 3 HOH A 89 433 91 HOH HOH . 
D 3 HOH A 90 434 92 HOH HOH . 
D 3 HOH A 91 435 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 -7.78 30.482 32.485 1 71.23 ? C1 GOL 1 A 1 
HETATM 2 O O1 GOL . . . B 2 -8.555 31.164 31.547 1 72.82 ? O1 GOL 1 A 1 
HETATM 3 C C2 GOL . . . B 2 -7.674 29.062 32 1 72.48 ? C2 GOL 1 A 1 
HETATM 4 O O2 GOL . . . B 2 -8.825 28.38 32.453 1 73.44 ? O2 GOL 1 A 1 
HETATM 5 C C3 GOL . . . B 2 -6.402 28.439 32.553 1 72.54 ? C3 GOL 1 A 1 
HETATM 6 O O3 GOL . . . B 2 -5.313 28.733 31.702 1 73.13 ? O3 GOL 1 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#