data_1VPA # _model_server_result.job_id uhwoecjrzZTnLeHBZOFaWA _model_server_result.datetime_utc '2024-10-19 00:54:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vpa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":600}' # _entry.id 1VPA # _exptl.entry_id 1VPA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1VPA _cell.length_a 144.23 _cell.length_b 144.23 _cell.length_c 53.724 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VPA _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O2A CTP . A CTP 500 1_555 C MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc2 D O3G CTP . A CTP 500 1_555 C MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc3 D O1B CTP . A CTP 500 1_555 C MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc4 C MG MG . A MG 600 1_555 I O HOH . A HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc5 G O2A CTP . B CTP 500 1_555 F MG MG . B MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 G O1B CTP . B CTP 500 1_555 F MG MG . B MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc7 G O3G CTP . B CTP 500 1_555 F MG MG . B MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1VPA _atom_sites.fract_transf_matrix[1][1] 0.006933 _atom_sites.fract_transf_matrix[1][2] 0.004003 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 600 600 MG MG . D 3 CTP A 1 500 500 CTP CTP . E 4 ACY A 1 700 700 ACY ACY . F 2 MG B 1 600 600 MG MG . G 3 CTP B 1 500 500 CTP CTP . H 4 ACY B 1 700 700 ACY ACY . I 5 HOH A 1 701 1 HOH HOH . I 5 HOH A 2 702 2 HOH HOH . I 5 HOH A 3 703 5 HOH HOH . I 5 HOH A 4 704 6 HOH HOH . I 5 HOH A 5 705 7 HOH HOH . I 5 HOH A 6 706 15 HOH HOH . I 5 HOH A 7 707 17 HOH HOH . I 5 HOH A 8 708 18 HOH HOH . I 5 HOH A 9 709 19 HOH HOH . I 5 HOH A 10 710 21 HOH HOH . I 5 HOH A 11 711 22 HOH HOH . I 5 HOH A 12 712 23 HOH HOH . I 5 HOH A 13 713 24 HOH HOH . I 5 HOH A 14 714 25 HOH HOH . I 5 HOH A 15 715 26 HOH HOH . I 5 HOH A 16 716 27 HOH HOH . I 5 HOH A 17 717 28 HOH HOH . I 5 HOH A 18 718 30 HOH HOH . I 5 HOH A 19 719 31 HOH HOH . I 5 HOH A 20 720 32 HOH HOH . I 5 HOH A 21 721 33 HOH HOH . I 5 HOH A 22 722 37 HOH HOH . I 5 HOH A 23 723 39 HOH HOH . I 5 HOH A 24 724 40 HOH HOH . I 5 HOH A 25 725 41 HOH HOH . I 5 HOH A 26 726 42 HOH HOH . I 5 HOH A 27 727 43 HOH HOH . I 5 HOH A 28 728 47 HOH HOH . I 5 HOH A 29 729 49 HOH HOH . I 5 HOH A 30 730 51 HOH HOH . I 5 HOH A 31 731 54 HOH HOH . I 5 HOH A 32 732 55 HOH HOH . I 5 HOH A 33 733 56 HOH HOH . I 5 HOH A 34 734 57 HOH HOH . I 5 HOH A 35 735 58 HOH HOH . I 5 HOH A 36 736 61 HOH HOH . I 5 HOH A 37 737 63 HOH HOH . I 5 HOH A 38 738 64 HOH HOH . I 5 HOH A 39 739 67 HOH HOH . I 5 HOH A 40 740 68 HOH HOH . I 5 HOH A 41 741 71 HOH HOH . I 5 HOH A 42 742 72 HOH HOH . I 5 HOH A 43 743 74 HOH HOH . I 5 HOH A 44 744 76 HOH HOH . I 5 HOH A 45 745 78 HOH HOH . I 5 HOH A 46 746 79 HOH HOH . I 5 HOH A 47 747 81 HOH HOH . I 5 HOH A 48 748 82 HOH HOH . I 5 HOH A 49 749 83 HOH HOH . I 5 HOH A 50 750 86 HOH HOH . I 5 HOH A 51 751 87 HOH HOH . I 5 HOH A 52 752 88 HOH HOH . I 5 HOH A 53 753 90 HOH HOH . I 5 HOH A 54 754 93 HOH HOH . I 5 HOH A 55 755 94 HOH HOH . I 5 HOH A 56 756 95 HOH HOH . I 5 HOH A 57 757 99 HOH HOH . I 5 HOH A 58 758 100 HOH HOH . I 5 HOH A 59 759 101 HOH HOH . I 5 HOH A 60 760 102 HOH HOH . I 5 HOH A 61 761 104 HOH HOH . I 5 HOH A 62 762 106 HOH HOH . I 5 HOH A 63 763 108 HOH HOH . I 5 HOH A 64 764 110 HOH HOH . I 5 HOH A 65 765 111 HOH HOH . I 5 HOH A 66 766 112 HOH HOH . I 5 HOH A 67 767 113 HOH HOH . I 5 HOH A 68 768 114 HOH HOH . I 5 HOH A 69 769 115 HOH HOH . I 5 HOH A 70 770 116 HOH HOH . J 5 HOH B 1 701 3 HOH HOH . J 5 HOH B 2 702 4 HOH HOH . J 5 HOH B 3 703 8 HOH HOH . J 5 HOH B 4 704 9 HOH HOH . J 5 HOH B 5 705 10 HOH HOH . J 5 HOH B 6 706 11 HOH HOH . J 5 HOH B 7 707 12 HOH HOH . J 5 HOH B 8 708 13 HOH HOH . J 5 HOH B 9 709 14 HOH HOH . J 5 HOH B 10 710 16 HOH HOH . J 5 HOH B 11 711 20 HOH HOH . J 5 HOH B 12 712 29 HOH HOH . J 5 HOH B 13 713 34 HOH HOH . J 5 HOH B 14 714 35 HOH HOH . J 5 HOH B 15 715 36 HOH HOH . J 5 HOH B 16 716 38 HOH HOH . J 5 HOH B 17 717 44 HOH HOH . J 5 HOH B 18 718 45 HOH HOH . J 5 HOH B 19 719 46 HOH HOH . J 5 HOH B 20 720 48 HOH HOH . J 5 HOH B 21 721 50 HOH HOH . J 5 HOH B 22 722 52 HOH HOH . J 5 HOH B 23 723 53 HOH HOH . J 5 HOH B 24 724 59 HOH HOH . J 5 HOH B 25 725 60 HOH HOH . J 5 HOH B 26 726 62 HOH HOH . J 5 HOH B 27 727 65 HOH HOH . J 5 HOH B 28 728 66 HOH HOH . J 5 HOH B 29 729 69 HOH HOH . J 5 HOH B 30 730 70 HOH HOH . J 5 HOH B 31 731 73 HOH HOH . J 5 HOH B 32 732 75 HOH HOH . J 5 HOH B 33 733 77 HOH HOH . J 5 HOH B 34 734 80 HOH HOH . J 5 HOH B 35 735 84 HOH HOH . J 5 HOH B 36 736 85 HOH HOH . J 5 HOH B 37 737 89 HOH HOH . J 5 HOH B 38 738 91 HOH HOH . J 5 HOH B 39 739 92 HOH HOH . J 5 HOH B 40 740 96 HOH HOH . J 5 HOH B 41 741 97 HOH HOH . J 5 HOH B 42 742 98 HOH HOH . J 5 HOH B 43 743 103 HOH HOH . J 5 HOH B 44 744 105 HOH HOH . J 5 HOH B 45 745 107 HOH HOH . J 5 HOH B 46 746 109 HOH HOH . J 5 HOH B 47 747 117 HOH HOH . J 5 HOH B 48 748 118 HOH HOH . J 5 HOH B 49 749 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -40.173 _atom_site.Cartn_y 101.055 _atom_site.Cartn_z -3.028 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 600 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #