data_1VPV
#
_model_server_result.job_id            5Q9wjBeXsNtvPC0l-_as_A 
_model_server_result.datetime_utc      '2024-11-05 01:01:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vpv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":289}' 
#
_entry.id    1VPV 
#
_exptl.entry_id    1VPV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VPV 
_cell.length_a            103.256 
_cell.length_b            103.256 
_cell.length_c            115.863 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VPV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 13 A MSE 1 1_555 A N LYS 14 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C TRP 29 A TRP 17 1_555 A N MSE 30 A MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 A C MSE 30 A MSE 18 1_555 A N GLU 31 A GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C ILE 59 A ILE 47 1_555 A N MSE 60 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale5 A C MSE 60 A MSE 48 1_555 A N ASN 61 A ASN 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C GLU 146 A GLU 134 1_555 A N MSE 147 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale7 A C MSE 147 A MSE 135 1_555 A N LEU 148 A LEU 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale8 A C ARG 164 A ARG 152 1_555 A N MSE 165 A MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale9 A C MSE 165 A MSE 153 1_555 A N LYS 166 A LYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale10 A C PRO 275 A PRO 263 1_555 A N MSE 276 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale11 A C MSE 276 A MSE 264 1_555 A N GLY 277 A GLY 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 B C MSE 13 B MSE 1 1_555 B N LYS 14 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale13 B C TRP 29 B TRP 17 1_555 B N MSE 30 B MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale14 B C MSE 30 B MSE 18 1_555 B N GLU 31 B GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale15 B C ILE 59 B ILE 47 1_555 B N MSE 60 B MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale16 B C MSE 60 B MSE 48 1_555 B N ASN 61 B ASN 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale17 B C GLU 146 B GLU 134 1_555 B N MSE 147 B MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale18 B C MSE 147 B MSE 135 1_555 B N LEU 148 B LEU 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale19 B C ARG 164 B ARG 152 1_555 B N MSE 165 B MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale20 B C MSE 165 B MSE 153 1_555 B N LYS 166 B LYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale21 B C PRO 275 B PRO 263 1_555 B N MSE 276 B MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale22 B C MSE 276 B MSE 264 1_555 B N GLY 277 B GLY 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 328 n n 
P O2 PO4 sing 329 n n 
P O3 PO4 sing 330 n n 
P O4 PO4 sing 331 n n 
#
_atom_sites.entry_id                     1VPV 
_atom_sites.fract_transf_matrix[1][1]    0.009685 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009685 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008631 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 289 2 PO4 PO4 . 
D 3 PLM A 1 501 501 PLM PLM . 
E 2 PO4 B 1 289 1 PO4 PO4 . 
F 3 PLM B 1 501 501 PLM PLM . 
G 4 HOH A 1 502 4 HOH HOH . 
G 4 HOH A 2 503 6 HOH HOH . 
G 4 HOH A 3 504 7 HOH HOH . 
G 4 HOH A 4 505 8 HOH HOH . 
G 4 HOH A 5 506 10 HOH HOH . 
G 4 HOH A 6 507 11 HOH HOH . 
G 4 HOH A 7 508 12 HOH HOH . 
G 4 HOH A 8 509 13 HOH HOH . 
G 4 HOH A 9 510 14 HOH HOH . 
G 4 HOH A 10 511 16 HOH HOH . 
G 4 HOH A 11 512 23 HOH HOH . 
G 4 HOH A 12 513 25 HOH HOH . 
G 4 HOH A 13 514 26 HOH HOH . 
G 4 HOH A 14 515 27 HOH HOH . 
G 4 HOH A 15 516 28 HOH HOH . 
G 4 HOH A 16 517 32 HOH HOH . 
G 4 HOH A 17 518 34 HOH HOH . 
G 4 HOH A 18 519 36 HOH HOH . 
G 4 HOH A 19 520 37 HOH HOH . 
G 4 HOH A 20 521 40 HOH HOH . 
G 4 HOH A 21 522 41 HOH HOH . 
G 4 HOH A 22 523 45 HOH HOH . 
G 4 HOH A 23 524 46 HOH HOH . 
G 4 HOH A 24 525 47 HOH HOH . 
G 4 HOH A 25 526 48 HOH HOH . 
G 4 HOH A 26 527 50 HOH HOH . 
G 4 HOH A 27 528 51 HOH HOH . 
G 4 HOH A 28 529 56 HOH HOH . 
G 4 HOH A 29 530 59 HOH HOH . 
G 4 HOH A 30 531 60 HOH HOH . 
G 4 HOH A 31 532 66 HOH HOH . 
G 4 HOH A 32 533 68 HOH HOH . 
G 4 HOH A 33 534 70 HOH HOH . 
G 4 HOH A 34 535 71 HOH HOH . 
G 4 HOH A 35 536 72 HOH HOH . 
G 4 HOH A 36 537 73 HOH HOH . 
G 4 HOH A 37 538 79 HOH HOH . 
G 4 HOH A 38 539 80 HOH HOH . 
G 4 HOH A 39 540 86 HOH HOH . 
G 4 HOH A 40 541 87 HOH HOH . 
G 4 HOH A 41 542 90 HOH HOH . 
G 4 HOH A 42 543 91 HOH HOH . 
G 4 HOH A 43 544 93 HOH HOH . 
G 4 HOH A 44 545 97 HOH HOH . 
G 4 HOH A 45 546 98 HOH HOH . 
G 4 HOH A 46 547 101 HOH HOH . 
G 4 HOH A 47 548 102 HOH HOH . 
G 4 HOH A 48 549 106 HOH HOH . 
G 4 HOH A 49 550 107 HOH HOH . 
H 4 HOH B 1 502 3 HOH HOH . 
H 4 HOH B 2 503 5 HOH HOH . 
H 4 HOH B 3 504 9 HOH HOH . 
H 4 HOH B 4 505 15 HOH HOH . 
H 4 HOH B 5 506 17 HOH HOH . 
H 4 HOH B 6 507 18 HOH HOH . 
H 4 HOH B 7 508 19 HOH HOH . 
H 4 HOH B 8 509 20 HOH HOH . 
H 4 HOH B 9 510 21 HOH HOH . 
H 4 HOH B 10 511 22 HOH HOH . 
H 4 HOH B 11 512 24 HOH HOH . 
H 4 HOH B 12 513 29 HOH HOH . 
H 4 HOH B 13 514 30 HOH HOH . 
H 4 HOH B 14 515 31 HOH HOH . 
H 4 HOH B 15 516 33 HOH HOH . 
H 4 HOH B 16 517 35 HOH HOH . 
H 4 HOH B 17 518 38 HOH HOH . 
H 4 HOH B 18 519 39 HOH HOH . 
H 4 HOH B 19 520 42 HOH HOH . 
H 4 HOH B 20 521 43 HOH HOH . 
H 4 HOH B 21 522 44 HOH HOH . 
H 4 HOH B 22 523 49 HOH HOH . 
H 4 HOH B 23 524 52 HOH HOH . 
H 4 HOH B 24 525 53 HOH HOH . 
H 4 HOH B 25 526 54 HOH HOH . 
H 4 HOH B 26 527 55 HOH HOH . 
H 4 HOH B 27 528 57 HOH HOH . 
H 4 HOH B 28 529 58 HOH HOH . 
H 4 HOH B 29 530 61 HOH HOH . 
H 4 HOH B 30 531 62 HOH HOH . 
H 4 HOH B 31 532 63 HOH HOH . 
H 4 HOH B 32 533 64 HOH HOH . 
H 4 HOH B 33 534 65 HOH HOH . 
H 4 HOH B 34 535 67 HOH HOH . 
H 4 HOH B 35 536 69 HOH HOH . 
H 4 HOH B 36 537 74 HOH HOH . 
H 4 HOH B 37 538 75 HOH HOH . 
H 4 HOH B 38 539 76 HOH HOH . 
H 4 HOH B 39 540 77 HOH HOH . 
H 4 HOH B 40 541 78 HOH HOH . 
H 4 HOH B 41 542 81 HOH HOH . 
H 4 HOH B 42 543 82 HOH HOH . 
H 4 HOH B 43 544 83 HOH HOH . 
H 4 HOH B 44 545 84 HOH HOH . 
H 4 HOH B 45 546 85 HOH HOH . 
H 4 HOH B 46 547 88 HOH HOH . 
H 4 HOH B 47 548 89 HOH HOH . 
H 4 HOH B 48 549 92 HOH HOH . 
H 4 HOH B 49 550 94 HOH HOH . 
H 4 HOH B 50 551 95 HOH HOH . 
H 4 HOH B 51 552 96 HOH HOH . 
H 4 HOH B 52 553 99 HOH HOH . 
H 4 HOH B 53 554 100 HOH HOH . 
H 4 HOH B 54 555 103 HOH HOH . 
H 4 HOH B 55 556 104 HOH HOH . 
H 4 HOH B 56 557 105 HOH HOH . 
H 4 HOH B 57 558 108 HOH HOH . 
H 4 HOH B 58 559 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . E 2 -37.437 -14.731 6.793 1 2.72 ? P PO4 289 B 1 
HETATM 2 O O1 PO4 . . . E 2 -37.258 -15.036 5.333 1 19.9 ? O1 PO4 289 B 1 
HETATM 3 O O2 PO4 . . . E 2 -36.564 -15.649 7.51 1 10.05 ? O2 PO4 289 B 1 
HETATM 4 O O3 PO4 . . . E 2 -38.852 -14.968 7.259 1 14.48 ? O3 PO4 289 B 1 
HETATM 5 O O4 PO4 . . . E 2 -36.975 -13.35 7.11 1 10.36 ? O4 PO4 289 B 1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#