data_1VPW # _model_server_result.job_id UiRoS0IsyMuPYB4ta0yX9w _model_server_result.datetime_utc '2025-01-18 09:42:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vpw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":599}' # _entry.id 1VPW # _exptl.entry_id 1VPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.111 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HYPOXANTHINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VPW _cell.length_a 175.89 _cell.length_b 94.93 _cell.length_c 81.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VPW _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DA 2 B DA 700 1_555 A N3 DT 17 B DT 715 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 2 B DA 700 1_555 A O4 DT 17 B DT 715 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 3 B DC 701 1_555 A N1 DG 16 B DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 3 B DC 701 1_555 A O6 DG 16 B DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 3 B DC 701 1_555 A N2 DG 16 B DG 714 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 4 B DG 702 1_555 A N3 DC 15 B DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 4 B DG 702 1_555 A O2 DC 15 B DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 4 B DG 702 1_555 A N4 DC 15 B DC 713 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 5 B DC 703 1_555 A N1 DG 14 B DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 5 B DC 703 1_555 A O6 DG 14 B DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 5 B DC 703 1_555 A N2 DG 14 B DG 712 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 6 B DA 704 1_555 A N3 DT 13 B DT 711 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 6 B DA 704 1_555 A O4 DT 13 B DT 711 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 7 B DA 705 1_555 A N3 DT 12 B DT 710 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 7 B DA 705 1_555 A O4 DT 12 B DT 710 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DA 8 B DA 706 1_555 A N3 DT 11 B DT 709 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N6 DA 8 B DA 706 1_555 A O4 DT 11 B DT 709 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DC 9 B DC 707 1_555 A N1 DG 10 B DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 DC 9 B DC 707 1_555 A O6 DG 10 B DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 DC 9 B DC 707 1_555 A N2 DG 10 B DG 708 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DG 10 B DG 708 1_555 A N3 DC 9 B DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N2 DG 10 B DG 708 1_555 A O2 DC 9 B DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O6 DG 10 B DG 708 1_555 A N4 DC 9 B DC 707 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DT 11 B DT 709 1_555 A N1 DA 8 B DA 706 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O4 DT 11 B DT 709 1_555 A N6 DA 8 B DA 706 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DT 12 B DT 710 1_555 A N1 DA 7 B DA 705 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O4 DT 12 B DT 710 1_555 A N6 DA 7 B DA 705 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N3 DT 13 B DT 711 1_555 A N1 DA 6 B DA 704 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O4 DT 13 B DT 711 1_555 A N6 DA 6 B DA 704 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 14 B DG 712 1_555 A N3 DC 5 B DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 14 B DG 712 1_555 A O2 DC 5 B DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 14 B DG 712 1_555 A N4 DC 5 B DC 703 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 DC 15 B DC 713 1_555 A N1 DG 4 B DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N4 DC 15 B DC 713 1_555 A O6 DG 4 B DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O2 DC 15 B DC 713 1_555 A N2 DG 4 B DG 702 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DG 16 B DG 714 1_555 A N3 DC 3 B DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N2 DG 16 B DG 714 1_555 A O2 DC 3 B DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O6 DG 16 B DG 714 1_555 A N4 DC 3 B DC 701 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N3 DT 17 B DT 715 1_555 A N1 DA 2 B DA 700 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A O4 DT 17 B DT 715 1_555 A N6 DA 2 B DA 700 4_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C5 H4 N4 O' _chem_comp.formula_weight 136.111 _chem_comp.id HPA _chem_comp.mon_nstd_flag . _chem_comp.name HYPOXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HPA sing 301 n y N1 C6 HPA sing 302 n y N1 HN1 HPA sing 303 n n C2 N3 HPA doub 304 n y C2 H2 HPA sing 305 n n N3 C4 HPA sing 306 n y C4 C5 HPA doub 307 n y C4 N9 HPA sing 308 n y C5 C6 HPA sing 309 n y C5 N7 HPA sing 310 n y C6 O6 HPA doub 311 n n N7 C8 HPA sing 312 n y N7 HN7 HPA sing 313 n n C8 N9 HPA doub 314 n y C8 H8 HPA sing 315 n n # _atom_sites.entry_id 1VPW _atom_sites.fract_transf_matrix[1][1] 0.005685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HPA A 1 599 599 HPA HPA . D 4 HOH B 1 9 9 HOH HOH . D 4 HOH B 2 11 11 HOH HOH . D 4 HOH B 3 16 16 HOH HOH . D 4 HOH B 4 29 29 HOH HOH . D 4 HOH B 5 46 46 HOH HOH . E 4 HOH A 1 600 1 HOH HOH . E 4 HOH A 2 601 2 HOH HOH . E 4 HOH A 3 602 3 HOH HOH . E 4 HOH A 4 603 4 HOH HOH . E 4 HOH A 5 604 5 HOH HOH . E 4 HOH A 6 605 6 HOH HOH . E 4 HOH A 7 606 7 HOH HOH . E 4 HOH A 8 607 8 HOH HOH . E 4 HOH A 9 608 10 HOH HOH . E 4 HOH A 10 609 12 HOH HOH . E 4 HOH A 11 610 13 HOH HOH . E 4 HOH A 12 611 14 HOH HOH . E 4 HOH A 13 612 15 HOH HOH . E 4 HOH A 14 613 17 HOH HOH . E 4 HOH A 15 614 18 HOH HOH . E 4 HOH A 16 615 19 HOH HOH . E 4 HOH A 17 616 20 HOH HOH . E 4 HOH A 18 617 21 HOH HOH . E 4 HOH A 19 618 22 HOH HOH . E 4 HOH A 20 619 23 HOH HOH . E 4 HOH A 21 620 25 HOH HOH . E 4 HOH A 22 621 26 HOH HOH . E 4 HOH A 23 622 27 HOH HOH . E 4 HOH A 24 623 28 HOH HOH . E 4 HOH A 25 624 30 HOH HOH . E 4 HOH A 26 625 31 HOH HOH . E 4 HOH A 27 626 32 HOH HOH . E 4 HOH A 28 627 33 HOH HOH . E 4 HOH A 29 628 34 HOH HOH . E 4 HOH A 30 629 36 HOH HOH . E 4 HOH A 31 630 37 HOH HOH . E 4 HOH A 32 631 38 HOH HOH . E 4 HOH A 33 632 39 HOH HOH . E 4 HOH A 34 633 43 HOH HOH . E 4 HOH A 35 634 45 HOH HOH . E 4 HOH A 36 635 49 HOH HOH . E 4 HOH A 37 636 50 HOH HOH . E 4 HOH A 38 637 51 HOH HOH . E 4 HOH A 39 638 53 HOH HOH . E 4 HOH A 40 639 54 HOH HOH . E 4 HOH A 41 640 58 HOH HOH . E 4 HOH A 42 641 62 HOH HOH . E 4 HOH A 43 642 63 HOH HOH . E 4 HOH A 44 643 64 HOH HOH . E 4 HOH A 45 644 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HPA . . . C 3 56.541 2.433 -11.175 1 44.62 ? N1 HPA 599 A 1 HETATM 2 C C2 HPA . . . C 3 57.351 2.355 -10.067 1 79.65 ? C2 HPA 599 A 1 HETATM 3 N N3 HPA . . . C 3 58.076 3.365 -9.598 1 11.05 ? N3 HPA 599 A 1 HETATM 4 C C4 HPA . . . C 3 57.927 4.485 -10.343 1 49.84 ? C4 HPA 599 A 1 HETATM 5 C C5 HPA . . . C 3 57.147 4.662 -11.463 1 40.82 ? C5 HPA 599 A 1 HETATM 6 C C6 HPA . . . C 3 56.37 3.58 -11.946 1 37.04 ? C6 HPA 599 A 1 HETATM 7 O O6 HPA . . . C 3 55.607 3.555 -12.92 1 53.64 ? O6 HPA 599 A 1 HETATM 8 N N7 HPA . . . C 3 57.265 5.963 -11.933 1 44.88 ? N7 HPA 599 A 1 HETATM 9 C C8 HPA . . . C 3 58.09 6.537 -11.101 1 14.19 ? C8 HPA 599 A 1 HETATM 10 N N9 HPA . . . C 3 58.525 5.702 -10.103 1 29.18 ? N9 HPA 599 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 10 #