data_1VPX # _model_server_result.job_id CEuEeFqYdGSH0fBBMMl2fg _model_server_result.datetime_utc '2025-10-01 11:36:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":220}' # _entry.id 1VPX # _exptl.entry_id 1VPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 21 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.99 _cell.angle_gamma 90 _cell.entry_id 1VPX _cell.length_a 145.298 _cell.length_b 104.419 _cell.length_c 171.124 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA decameric 10 author_and_software_defined_assembly 1 PISA decameric 10 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,U,V,W,X,Y,Z,AA,BA,CA,DA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 1 1 K,L,M,N,O,P,Q,R,S,T,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,AB,BB,CB,DB,EB,FB,GB,HB,IB 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag ? _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1VPX _atom_sites.fract_transf_matrix[1][1] 0.006882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002368 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 2 GOL A 1 219 13 GOL GOL ? V 2 GOL B 1 219 1 GOL GOL ? W 2 GOL C 1 219 2 GOL GOL ? X 2 GOL D 1 219 14 GOL GOL ? Y 2 GOL E 1 219 15 GOL GOL ? Z 2 GOL F 1 219 8 GOL GOL ? AA 2 GOL G 1 219 9 GOL GOL ? BA 2 GOL H 1 219 10 GOL GOL ? CA 2 GOL I 1 219 11 GOL GOL ? DA 2 GOL J 1 219 12 GOL GOL ? EA 2 GOL K 1 219 5 GOL GOL ? FA 2 GOL L 1 219 19 GOL GOL ? GA 2 GOL M 1 219 20 GOL GOL ? HA 2 GOL N 1 219 6 GOL GOL ? IA 3 SO4 O 1 219 22 SO4 SO4 ? JA 2 GOL O 1 220 7 GOL GOL ? KA 2 GOL P 1 219 16 GOL GOL ? LA 2 GOL P 1 220 21 GOL GOL ? MA 2 GOL Q 1 219 17 GOL GOL ? NA 2 GOL R 1 219 3 GOL GOL ? OA 2 GOL S 1 219 4 GOL GOL ? PA 2 GOL T 1 219 18 GOL GOL ? QA 4 HOH A 1 220 31 HOH HOH ? QA 4 HOH A 2 221 39 HOH HOH ? QA 4 HOH A 3 222 64 HOH HOH ? QA 4 HOH A 4 223 66 HOH HOH ? QA 4 HOH A 5 224 67 HOH HOH ? RA 4 HOH B 1 220 43 HOH HOH ? RA 4 HOH B 2 221 52 HOH HOH ? RA 4 HOH B 3 222 63 HOH HOH ? RA 4 HOH B 4 223 68 HOH HOH ? RA 4 HOH B 5 224 70 HOH HOH ? RA 4 HOH B 6 225 72 HOH HOH ? SA 4 HOH C 1 220 23 HOH HOH ? SA 4 HOH C 2 221 34 HOH HOH ? SA 4 HOH C 3 222 35 HOH HOH ? SA 4 HOH C 4 223 73 HOH HOH ? SA 4 HOH C 5 224 74 HOH HOH ? SA 4 HOH C 6 225 75 HOH HOH ? SA 4 HOH C 7 226 76 HOH HOH ? TA 4 HOH D 1 220 32 HOH HOH ? TA 4 HOH D 2 221 33 HOH HOH ? TA 4 HOH D 3 222 41 HOH HOH ? TA 4 HOH D 4 223 44 HOH HOH ? TA 4 HOH D 5 224 50 HOH HOH ? TA 4 HOH D 6 225 53 HOH HOH ? TA 4 HOH D 7 226 78 HOH HOH ? TA 4 HOH D 8 227 79 HOH HOH ? TA 4 HOH D 9 228 80 HOH HOH ? TA 4 HOH D 10 229 81 HOH HOH ? TA 4 HOH D 11 230 82 HOH HOH ? TA 4 HOH D 12 231 83 HOH HOH ? TA 4 HOH D 13 232 84 HOH HOH ? TA 4 HOH D 14 233 88 HOH HOH ? TA 4 HOH D 15 234 89 HOH HOH ? TA 4 HOH D 16 235 90 HOH HOH ? UA 4 HOH E 1 220 29 HOH HOH ? UA 4 HOH E 2 221 38 HOH HOH ? UA 4 HOH E 3 222 51 HOH HOH ? UA 4 HOH E 4 223 87 HOH HOH ? UA 4 HOH E 5 224 92 HOH HOH ? UA 4 HOH E 6 225 93 HOH HOH ? UA 4 HOH E 7 226 94 HOH HOH ? VA 4 HOH F 1 220 25 HOH HOH ? VA 4 HOH F 2 221 46 HOH HOH ? VA 4 HOH F 3 222 58 HOH HOH ? VA 4 HOH F 4 223 65 HOH HOH ? VA 4 HOH F 5 224 96 HOH HOH ? WA 4 HOH G 1 220 26 HOH HOH ? WA 4 HOH G 2 221 27 HOH HOH ? WA 4 HOH G 3 222 36 HOH HOH ? WA 4 HOH G 4 223 37 HOH HOH ? WA 4 HOH G 5 224 47 HOH HOH ? WA 4 HOH G 6 225 62 HOH HOH ? WA 4 HOH G 7 226 85 HOH HOH ? WA 4 HOH G 8 227 86 HOH HOH ? WA 4 HOH G 9 228 95 HOH HOH ? WA 4 HOH G 10 229 114 HOH HOH ? WA 4 HOH G 11 230 115 HOH HOH ? WA 4 HOH G 12 231 116 HOH HOH ? WA 4 HOH G 13 232 117 HOH HOH ? WA 4 HOH G 14 233 118 HOH HOH ? WA 4 HOH G 15 234 119 HOH HOH ? WA 4 HOH G 16 235 120 HOH HOH ? WA 4 HOH G 17 236 126 HOH HOH ? XA 4 HOH H 1 220 40 HOH HOH ? XA 4 HOH H 2 221 42 HOH HOH ? XA 4 HOH H 3 222 121 HOH HOH ? YA 4 HOH I 1 220 77 HOH HOH ? YA 4 HOH I 2 221 91 HOH HOH ? YA 4 HOH I 3 222 123 HOH HOH ? YA 4 HOH I 4 223 124 HOH HOH ? ZA 4 HOH J 1 220 45 HOH HOH ? ZA 4 HOH J 2 221 59 HOH HOH ? ZA 4 HOH J 3 222 60 HOH HOH ? ZA 4 HOH J 4 223 61 HOH HOH ? ZA 4 HOH J 5 224 69 HOH HOH ? ZA 4 HOH J 6 225 71 HOH HOH ? ZA 4 HOH J 7 226 125 HOH HOH ? AB 4 HOH K 1 220 28 HOH HOH ? AB 4 HOH K 2 221 105 HOH HOH ? AB 4 HOH K 3 222 106 HOH HOH ? BB 4 HOH L 1 220 108 HOH HOH ? CB 4 HOH M 1 220 101 HOH HOH ? CB 4 HOH M 2 221 109 HOH HOH ? DB 4 HOH O 1 221 24 HOH HOH ? DB 4 HOH O 2 222 107 HOH HOH ? DB 4 HOH O 3 223 111 HOH HOH ? DB 4 HOH O 4 224 112 HOH HOH ? DB 4 HOH O 5 225 113 HOH HOH ? EB 4 HOH P 1 221 49 HOH HOH ? EB 4 HOH P 2 222 97 HOH HOH ? EB 4 HOH P 3 223 99 HOH HOH ? FB 4 HOH Q 1 220 30 HOH HOH ? FB 4 HOH Q 2 221 54 HOH HOH ? FB 4 HOH Q 3 222 55 HOH HOH ? FB 4 HOH Q 4 223 98 HOH HOH ? FB 4 HOH Q 5 224 100 HOH HOH ? FB 4 HOH Q 6 225 102 HOH HOH ? FB 4 HOH Q 7 226 110 HOH HOH ? GB 4 HOH R 1 220 48 HOH HOH ? GB 4 HOH R 2 221 56 HOH HOH ? HB 4 HOH S 1 220 57 HOH HOH ? HB 4 HOH S 2 221 103 HOH HOH ? IB 4 HOH T 1 220 104 HOH HOH ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . JA 2 37.921 -17.931 32.808 1 47.75 ? C1 GOL 220 O 1 HETATM 2 O O1 GOL . . . JA 2 37.435 -17.462 34.034 1 62.72 ? O1 GOL 220 O 1 HETATM 3 C C2 GOL . . . JA 2 37.431 -16.868 31.883 1 51.92 ? C2 GOL 220 O 1 HETATM 4 O O2 GOL . . . JA 2 38.164 -15.665 32.096 1 48.33 ? O2 GOL 220 O 1 HETATM 5 C C3 GOL . . . JA 2 37.663 -17.485 30.545 1 49.35 ? C3 GOL 220 O 1 HETATM 6 O O3 GOL . . . JA 2 38.452 -16.622 29.75 1 53.51 ? O3 GOL 220 O 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 533 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #