data_1VQ1
#
_model_server_result.job_id            TJ2rIXSM4jT5lPcFMdyAAw 
_model_server_result.datetime_utc      '2024-12-02 03:21:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vq1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    1VQ1 
#
_exptl.entry_id    1VQ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.46 
_cell.angle_gamma         90 
_cell.entry_id            1VQ1 
_cell.length_a            140.973 
_cell.length_b            58.611 
_cell.length_c            85.667 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VQ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 100 A PHE 88 1_555 A N MSE 101 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C MSE 101 A MSE 89 1_555 A N GLY 102 A GLY 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale3 A C GLU 204 A GLU 192 1_555 A N MSE 205 A MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MSE 205 A MSE 193 1_555 A N ILE 206 A ILE 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 A C LEU 256 A LEU 244 1_555 A N MSE 257 A MSE 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C MSE 257 A MSE 245 1_555 A N GLU 258 A GLU 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 B C PHE 100 B PHE 88 1_555 B N MSE 101 B MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale8 B C MSE 101 B MSE 89 1_555 B N GLY 102 B GLY 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale9 B C GLU 204 B GLU 192 1_555 B N MSE 205 B MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale10 B C MSE 205 B MSE 193 1_555 B N ILE 206 B ILE 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale11 B C LEU 256 B LEU 244 1_555 B N MSE 257 B MSE 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
covale ? covale12 B C MSE 257 B MSE 245 1_555 B N GLU 258 B GLU 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 296 n n 
N HN1 SAM sing 297 n n 
N HN2 SAM sing 298 n n 
CA C SAM sing 299 n n 
CA CB SAM sing 300 n n 
CA HA SAM sing 301 n n 
C O SAM doub 302 n n 
C OXT SAM sing 303 n n 
CB CG SAM sing 304 n n 
CB HB1 SAM sing 305 n n 
CB HB2 SAM sing 306 n n 
CG SD SAM sing 307 n n 
CG HG1 SAM sing 308 n n 
CG HG2 SAM sing 309 n n 
SD CE SAM sing 310 n n 
SD C5' SAM sing 311 n n 
CE HE1 SAM sing 312 n n 
CE HE2 SAM sing 313 n n 
CE HE3 SAM sing 314 n n 
C5' C4' SAM sing 315 n n 
C5' "H5'1" SAM sing 316 n n 
C5' "H5'2" SAM sing 317 n n 
C4' O4' SAM sing 318 n n 
C4' C3' SAM sing 319 n n 
C4' H4' SAM sing 320 n n 
O4' C1' SAM sing 321 n n 
C3' O3' SAM sing 322 n n 
C3' C2' SAM sing 323 n n 
C3' H3' SAM sing 324 n n 
O3' HO3' SAM sing 325 n n 
C2' O2' SAM sing 326 n n 
C2' C1' SAM sing 327 n n 
C2' H2' SAM sing 328 n n 
O2' HO2' SAM sing 329 n n 
C1' N9 SAM sing 330 n n 
C1' H1' SAM sing 331 n n 
N9 C8 SAM sing 332 n y 
N9 C4 SAM sing 333 n y 
C8 N7 SAM doub 334 n y 
C8 H8 SAM sing 335 n n 
N7 C5 SAM sing 336 n y 
C5 C6 SAM sing 337 n y 
C5 C4 SAM doub 338 n y 
C6 N6 SAM sing 339 n n 
C6 N1 SAM doub 340 n y 
N6 HN61 SAM sing 341 n n 
N6 HN62 SAM sing 342 n n 
N1 C2 SAM sing 343 n y 
C2 N3 SAM doub 344 n y 
C2 H2 SAM sing 345 n n 
N3 C4 SAM sing 346 n y 
#
_atom_sites.entry_id                     1VQ1 
_atom_sites.fract_transf_matrix[1][1]    0.007094 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002506 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017062 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01238 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAM A 1 301 301 SAM SAM . 
D 2 SAM B 1 301 301 SAM SAM . 
E 3 HOH A 1 302 1 HOH HOH . 
E 3 HOH A 2 303 4 HOH HOH . 
F 3 HOH B 1 302 2 HOH HOH . 
F 3 HOH B 2 303 3 HOH HOH . 
F 3 HOH B 3 304 5 HOH HOH . 
F 3 HOH B 4 305 6 HOH HOH . 
F 3 HOH B 5 306 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . D 2 22.747 -14.358 -0.948 1 85.8 ? N SAM 301 B 1 
HETATM 2 C CA SAM . . . D 2 21.293 -14.414 -0.867 1 84.04 ? CA SAM 301 B 1 
HETATM 3 C C SAM . . . D 2 20.768 -15.833 -0.844 1 83.19 ? C SAM 301 B 1 
HETATM 4 O O SAM . . . D 2 20.09 -16.228 0.112 1 84.98 ? O SAM 301 B 1 
HETATM 5 O OXT SAM . . . D 2 20.99 -16.587 -1.789 1 80.01 ? OXT SAM 301 B 1 
HETATM 6 C CB SAM . . . D 2 20.642 -13.733 -2.048 1 84.02 ? CB SAM 301 B 1 
HETATM 7 C CG SAM . . . D 2 19.355 -13.086 -1.573 1 87.47 ? CG SAM 301 B 1 
HETATM 8 S SD SAM . . . D 2 18.125 -12.722 -2.854 1 89.31 ? SD SAM 301 B 1 
HETATM 9 C CE SAM . . . D 2 18.1 -13.911 -4.215 0.5 81.02 ? CE SAM 301 B 1 
HETATM 10 C C5' SAM . . . D 2 18.628 -11.099 -3.512 1 93.18 ? C5' SAM 301 B 1 
HETATM 11 C C4' SAM . . . D 2 19.157 -10.085 -2.472 1 96.93 ? C4' SAM 301 B 1 
HETATM 12 O O4' SAM . . . D 2 19.659 -8.956 -3.151 1 99.96 ? O4' SAM 301 B 1 
HETATM 13 C C3' SAM . . . D 2 18.166 -9.514 -1.456 1 96.03 ? C3' SAM 301 B 1 
HETATM 14 O O3' SAM . . . D 2 18.662 -9.768 -0.159 1 98.06 ? O3' SAM 301 B 1 
HETATM 15 C C2' SAM . . . D 2 18.002 -8.015 -1.798 1 96.26 ? C2' SAM 301 B 1 
HETATM 16 O O2' SAM . . . D 2 17.73 -7.186 -0.675 1 80.96 ? O2' SAM 301 B 1 
HETATM 17 C C1' SAM . . . D 2 19.331 -7.731 -2.499 1 99.92 ? C1' SAM 301 B 1 
HETATM 18 N N9 SAM . . . D 2 19.46 -6.797 -3.643 1 103.68 ? N9 SAM 301 B 1 
HETATM 19 C C8 SAM . . . D 2 18.622 -6.618 -4.724 1 103.57 ? C8 SAM 301 B 1 
HETATM 20 N N7 SAM . . . D 2 19.194 -5.72 -5.577 1 102.94 ? N7 SAM 301 B 1 
HETATM 21 C C5 SAM . . . D 2 20.396 -5.343 -5.07 1 103.28 ? C5 SAM 301 B 1 
HETATM 22 C C6 SAM . . . D 2 21.384 -4.47 -5.506 1 100.09 ? C6 SAM 301 B 1 
HETATM 23 N N6 SAM . . . D 2 21.254 -3.792 -6.636 1 101.45 ? N6 SAM 301 B 1 
HETATM 24 N N1 SAM . . . D 2 22.52 -4.306 -4.755 1 101.16 ? N1 SAM 301 B 1 
HETATM 25 C C2 SAM . . . D 2 22.698 -4.992 -3.575 1 101.67 ? C2 SAM 301 B 1 
HETATM 26 N N3 SAM . . . D 2 21.714 -5.85 -3.134 1 100.8 ? N3 SAM 301 B 1 
HETATM 27 C C4 SAM . . . D 2 20.583 -6.026 -3.867 1 103.7 ? C4 SAM 301 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           441 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#