data_1VR3 # _model_server_result.job_id cMNTr_kI-Wq_1uKLkEob1g _model_server_result.datetime_utc '2024-11-28 07:21:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vr3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 1VR3 # _exptl.entry_id 1VR3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VR3 _cell.length_a 79.136 _cell.length_b 79.136 _cell.length_c 114.128 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VR3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 13 A MSE 1 1_555 A N VAL 14 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C TYR 18 A TYR 6 1_555 A N MSE 19 A MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale3 A C MSE 19 A MSE 7 1_555 A N ASP 20 A ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C LYS 69 A LYS 57 1_555 A N MSE 70 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale5 A C MSE 70 A MSE 58 1_555 A N ARG 71 A ARG 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale6 A C TRP 75 A TRP 63 1_555 A N MSE 76 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C MSE 76 A MSE 64 1_555 A N ASP 77 A ASP 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C LYS 94 A LYS 82 1_555 A N MSE 95 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale9 A C MSE 95 A MSE 83 1_555 A N PHE 96 A PHE 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C SER 130 A SER 118 1_555 A N MSE 131 A MSE 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C MSE 131 A MSE 119 1_555 A N GLU 132 A GLU 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C ASP 135 A ASP 123 1_555 A N MSE 136 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C MSE 136 A MSE 124 1_555 A N ILE 137 A ILE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale14 A C ALA 157 A ALA 145 1_555 A N MSE 158 A MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 A C MSE 158 A MSE 146 1_555 A N ARG 159 A ARG 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 A C TYR 183 A TYR 171 1_555 A N MSE 184 A MSE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale17 A C MSE 184 A MSE 172 1_555 A N SER 185 A SER 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? metalc ? metalc1 A NE2 HIS 100 A HIS 88 1_555 B NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc2 A NE2 HIS 102 A HIS 90 1_555 B NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 A OE1 GLU 106 A GLU 94 1_555 B NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 A NE2 HIS 145 A HIS 133 1_555 B NI NI . A NI 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc5 B NI NI . A NI 200 1_555 C O1 UNL . A UNL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc6 B NI NI . A NI 200 1_555 C O6 UNL . A UNL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1VR3 _atom_sites.fract_transf_matrix[1][1] 0.012636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 200 200 NI NI . C 3 UNL A 1 201 1 UNL UNL . D 4 IPA A 1 202 2 IPA IPA . E 5 HOH A 1 203 3 HOH HOH . E 5 HOH A 2 204 4 HOH HOH . E 5 HOH A 3 205 5 HOH HOH . E 5 HOH A 4 206 6 HOH HOH . E 5 HOH A 5 207 7 HOH HOH . E 5 HOH A 6 208 8 HOH HOH . E 5 HOH A 7 209 9 HOH HOH . E 5 HOH A 8 210 10 HOH HOH . E 5 HOH A 9 211 11 HOH HOH . E 5 HOH A 10 212 12 HOH HOH . E 5 HOH A 11 213 13 HOH HOH . E 5 HOH A 12 214 14 HOH HOH . E 5 HOH A 13 215 15 HOH HOH . E 5 HOH A 14 216 16 HOH HOH . E 5 HOH A 15 217 17 HOH HOH . E 5 HOH A 16 218 18 HOH HOH . E 5 HOH A 17 219 19 HOH HOH . E 5 HOH A 18 220 20 HOH HOH . E 5 HOH A 19 221 21 HOH HOH . E 5 HOH A 20 222 22 HOH HOH . E 5 HOH A 21 223 23 HOH HOH . E 5 HOH A 22 224 24 HOH HOH . E 5 HOH A 23 225 25 HOH HOH . E 5 HOH A 24 226 26 HOH HOH . E 5 HOH A 25 227 27 HOH HOH . E 5 HOH A 26 228 28 HOH HOH . E 5 HOH A 27 229 29 HOH HOH . E 5 HOH A 28 230 30 HOH HOH . E 5 HOH A 29 231 31 HOH HOH . E 5 HOH A 30 232 32 HOH HOH . E 5 HOH A 31 233 33 HOH HOH . E 5 HOH A 32 234 34 HOH HOH . E 5 HOH A 33 235 35 HOH HOH . E 5 HOH A 34 236 36 HOH HOH . E 5 HOH A 35 237 37 HOH HOH . E 5 HOH A 36 238 38 HOH HOH . E 5 HOH A 37 239 39 HOH HOH . E 5 HOH A 38 240 40 HOH HOH . E 5 HOH A 39 241 41 HOH HOH . E 5 HOH A 40 242 42 HOH HOH . E 5 HOH A 41 243 43 HOH HOH . E 5 HOH A 42 244 44 HOH HOH . E 5 HOH A 43 245 45 HOH HOH . E 5 HOH A 44 246 46 HOH HOH . E 5 HOH A 45 247 47 HOH HOH . E 5 HOH A 46 248 48 HOH HOH . E 5 HOH A 47 249 49 HOH HOH . E 5 HOH A 48 250 50 HOH HOH . E 5 HOH A 49 251 51 HOH HOH . E 5 HOH A 50 252 52 HOH HOH . E 5 HOH A 51 253 53 HOH HOH . E 5 HOH A 52 254 54 HOH HOH . E 5 HOH A 53 255 55 HOH HOH . E 5 HOH A 54 256 56 HOH HOH . E 5 HOH A 55 257 57 HOH HOH . E 5 HOH A 56 258 58 HOH HOH . E 5 HOH A 57 259 59 HOH HOH . E 5 HOH A 58 260 60 HOH HOH . E 5 HOH A 59 261 61 HOH HOH . E 5 HOH A 60 262 62 HOH HOH . E 5 HOH A 61 263 63 HOH HOH . E 5 HOH A 62 264 64 HOH HOH . E 5 HOH A 63 265 65 HOH HOH . E 5 HOH A 64 266 66 HOH HOH . E 5 HOH A 65 267 67 HOH HOH . E 5 HOH A 66 268 68 HOH HOH . E 5 HOH A 67 269 69 HOH HOH . E 5 HOH A 68 270 70 HOH HOH . E 5 HOH A 69 271 71 HOH HOH . E 5 HOH A 70 272 72 HOH HOH . E 5 HOH A 71 273 73 HOH HOH . E 5 HOH A 72 274 74 HOH HOH . E 5 HOH A 73 275 75 HOH HOH . E 5 HOH A 74 276 76 HOH HOH . E 5 HOH A 75 277 77 HOH HOH . E 5 HOH A 76 278 78 HOH HOH . E 5 HOH A 77 279 79 HOH HOH . E 5 HOH A 78 280 80 HOH HOH . E 5 HOH A 79 281 81 HOH HOH . E 5 HOH A 80 282 82 HOH HOH . E 5 HOH A 81 283 83 HOH HOH . E 5 HOH A 82 284 84 HOH HOH . E 5 HOH A 83 285 85 HOH HOH . E 5 HOH A 84 286 86 HOH HOH . E 5 HOH A 85 287 87 HOH HOH . E 5 HOH A 86 288 88 HOH HOH . E 5 HOH A 87 289 89 HOH HOH . E 5 HOH A 88 290 90 HOH HOH . E 5 HOH A 89 291 91 HOH HOH . E 5 HOH A 90 292 92 HOH HOH . E 5 HOH A 91 293 93 HOH HOH . E 5 HOH A 92 294 94 HOH HOH . E 5 HOH A 93 295 95 HOH HOH . E 5 HOH A 94 296 96 HOH HOH . E 5 HOH A 95 297 97 HOH HOH . E 5 HOH A 96 298 98 HOH HOH . E 5 HOH A 97 299 99 HOH HOH . E 5 HOH A 98 300 100 HOH HOH . E 5 HOH A 99 301 101 HOH HOH . E 5 HOH A 100 302 102 HOH HOH . E 5 HOH A 101 303 103 HOH HOH . E 5 HOH A 102 304 104 HOH HOH . E 5 HOH A 103 305 105 HOH HOH . E 5 HOH A 104 306 106 HOH HOH . E 5 HOH A 105 307 107 HOH HOH . E 5 HOH A 106 308 108 HOH HOH . E 5 HOH A 107 309 109 HOH HOH . E 5 HOH A 108 310 110 HOH HOH . E 5 HOH A 109 311 111 HOH HOH . E 5 HOH A 110 312 112 HOH HOH . E 5 HOH A 111 313 113 HOH HOH . E 5 HOH A 112 314 114 HOH HOH . E 5 HOH A 113 315 115 HOH HOH . E 5 HOH A 114 316 116 HOH HOH . E 5 HOH A 115 317 117 HOH HOH . E 5 HOH A 116 318 118 HOH HOH . E 5 HOH A 117 319 119 HOH HOH . E 5 HOH A 118 320 120 HOH HOH . E 5 HOH A 119 321 121 HOH HOH . E 5 HOH A 120 322 122 HOH HOH . E 5 HOH A 121 323 123 HOH HOH . E 5 HOH A 122 324 124 HOH HOH . E 5 HOH A 123 325 125 HOH HOH . E 5 HOH A 124 326 126 HOH HOH . E 5 HOH A 125 327 127 HOH HOH . E 5 HOH A 126 328 128 HOH HOH . E 5 HOH A 127 329 129 HOH HOH . E 5 HOH A 128 330 130 HOH HOH . E 5 HOH A 129 331 131 HOH HOH . E 5 HOH A 130 332 132 HOH HOH . E 5 HOH A 131 333 133 HOH HOH . E 5 HOH A 132 334 134 HOH HOH . E 5 HOH A 133 335 135 HOH HOH . E 5 HOH A 134 336 136 HOH HOH . E 5 HOH A 135 337 137 HOH HOH . E 5 HOH A 136 338 138 HOH HOH . E 5 HOH A 137 339 139 HOH HOH . E 5 HOH A 138 340 140 HOH HOH . E 5 HOH A 139 341 141 HOH HOH . E 5 HOH A 140 342 142 HOH HOH . E 5 HOH A 141 343 143 HOH HOH . E 5 HOH A 142 344 144 HOH HOH . E 5 HOH A 143 345 145 HOH HOH . E 5 HOH A 144 346 146 HOH HOH . E 5 HOH A 145 347 147 HOH HOH . E 5 HOH A 146 348 148 HOH HOH . E 5 HOH A 147 349 149 HOH HOH . E 5 HOH A 148 350 150 HOH HOH . E 5 HOH A 149 351 151 HOH HOH . E 5 HOH A 150 352 152 HOH HOH . E 5 HOH A 151 353 153 HOH HOH . E 5 HOH A 152 354 154 HOH HOH . E 5 HOH A 153 355 155 HOH HOH . E 5 HOH A 154 356 156 HOH HOH . E 5 HOH A 155 357 157 HOH HOH . E 5 HOH A 156 358 158 HOH HOH . E 5 HOH A 157 359 159 HOH HOH . E 5 HOH A 158 360 160 HOH HOH . E 5 HOH A 159 361 161 HOH HOH . E 5 HOH A 160 362 162 HOH HOH . E 5 HOH A 161 363 163 HOH HOH . E 5 HOH A 162 364 164 HOH HOH . E 5 HOH A 163 365 165 HOH HOH . E 5 HOH A 164 366 166 HOH HOH . E 5 HOH A 165 367 167 HOH HOH . E 5 HOH A 166 368 168 HOH HOH . E 5 HOH A 167 369 169 HOH HOH . E 5 HOH A 168 370 170 HOH HOH . E 5 HOH A 169 371 171 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 40.35 _atom_site.Cartn_y 18.444 _atom_site.Cartn_z 47.424 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 200 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 394 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #