data_1VR7 # _model_server_result.job_id M51hLdNZjWgVojNm3G1A8w _model_server_result.datetime_utc '2024-12-26 15:15:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":131}' # _entry.id 1VR7 # _exptl.entry_id 1VR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1VR7 _cell.length_a 105.298 _cell.length_b 105.298 _cell.length_c 69.427 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 41 A GLU 29 1_555 A N MSE 42 A MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale2 A C MSE 42 A MSE 30 1_555 A N LYS 43 A LYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 B C MSE 13 B MSE 1 1_555 B N LYS 14 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 B C GLU 41 B GLU 29 1_555 B N MSE 42 B MSE 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale5 B C MSE 42 B MSE 30 1_555 B N LYS 43 B LYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 1VR7 _atom_sites.fract_transf_matrix[1][1] 0.0095 _atom_sites.fract_transf_matrix[1][2] 0.00548 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 131 1 EDO EDO . D 3 HOH A 1 132 2 HOH HOH . D 3 HOH A 2 133 4 HOH HOH . D 3 HOH A 3 134 5 HOH HOH . D 3 HOH A 4 135 7 HOH HOH . D 3 HOH A 5 136 9 HOH HOH . D 3 HOH A 6 137 11 HOH HOH . D 3 HOH A 7 138 12 HOH HOH . D 3 HOH A 8 139 16 HOH HOH . D 3 HOH A 9 140 19 HOH HOH . D 3 HOH A 10 141 22 HOH HOH . D 3 HOH A 11 142 24 HOH HOH . D 3 HOH A 12 143 25 HOH HOH . D 3 HOH A 13 144 28 HOH HOH . D 3 HOH A 14 145 29 HOH HOH . D 3 HOH A 15 146 31 HOH HOH . D 3 HOH A 16 147 37 HOH HOH . D 3 HOH A 17 148 40 HOH HOH . D 3 HOH A 18 149 41 HOH HOH . D 3 HOH A 19 150 42 HOH HOH . D 3 HOH A 20 151 43 HOH HOH . D 3 HOH A 21 152 44 HOH HOH . D 3 HOH A 22 153 47 HOH HOH . D 3 HOH A 23 154 50 HOH HOH . D 3 HOH A 24 155 56 HOH HOH . D 3 HOH A 25 156 57 HOH HOH . D 3 HOH A 26 157 58 HOH HOH . D 3 HOH A 27 158 59 HOH HOH . D 3 HOH A 28 159 60 HOH HOH . D 3 HOH A 29 160 61 HOH HOH . D 3 HOH A 30 161 62 HOH HOH . D 3 HOH A 31 162 63 HOH HOH . D 3 HOH A 32 163 64 HOH HOH . D 3 HOH A 33 164 66 HOH HOH . D 3 HOH A 34 165 67 HOH HOH . D 3 HOH A 35 166 68 HOH HOH . D 3 HOH A 36 167 69 HOH HOH . D 3 HOH A 37 168 70 HOH HOH . D 3 HOH A 38 169 71 HOH HOH . D 3 HOH A 39 170 72 HOH HOH . D 3 HOH A 40 171 74 HOH HOH . D 3 HOH A 41 172 76 HOH HOH . D 3 HOH A 42 173 77 HOH HOH . D 3 HOH A 43 174 78 HOH HOH . D 3 HOH A 44 175 79 HOH HOH . D 3 HOH A 45 176 80 HOH HOH . D 3 HOH A 46 177 84 HOH HOH . D 3 HOH A 47 178 86 HOH HOH . D 3 HOH A 48 179 88 HOH HOH . D 3 HOH A 49 180 90 HOH HOH . D 3 HOH A 50 181 91 HOH HOH . D 3 HOH A 51 182 92 HOH HOH . D 3 HOH A 52 183 95 HOH HOH . D 3 HOH A 53 184 98 HOH HOH . D 3 HOH A 54 185 100 HOH HOH . D 3 HOH A 55 186 101 HOH HOH . D 3 HOH A 56 187 103 HOH HOH . D 3 HOH A 57 188 105 HOH HOH . D 3 HOH A 58 189 106 HOH HOH . D 3 HOH A 59 190 109 HOH HOH . D 3 HOH A 60 191 110 HOH HOH . D 3 HOH A 61 192 111 HOH HOH . D 3 HOH A 62 193 112 HOH HOH . D 3 HOH A 63 194 114 HOH HOH . D 3 HOH A 64 195 117 HOH HOH . D 3 HOH A 65 196 119 HOH HOH . D 3 HOH A 66 197 122 HOH HOH . D 3 HOH A 67 198 126 HOH HOH . D 3 HOH A 68 199 128 HOH HOH . D 3 HOH A 69 200 130 HOH HOH . D 3 HOH A 70 201 131 HOH HOH . D 3 HOH A 71 202 132 HOH HOH . D 3 HOH A 72 203 133 HOH HOH . D 3 HOH A 73 204 134 HOH HOH . D 3 HOH A 74 205 136 HOH HOH . D 3 HOH A 75 206 137 HOH HOH . D 3 HOH A 76 207 139 HOH HOH . D 3 HOH A 77 208 141 HOH HOH . D 3 HOH A 78 209 142 HOH HOH . D 3 HOH A 79 210 143 HOH HOH . D 3 HOH A 80 211 144 HOH HOH . D 3 HOH A 81 212 145 HOH HOH . D 3 HOH A 82 213 146 HOH HOH . D 3 HOH A 83 214 147 HOH HOH . D 3 HOH A 84 215 148 HOH HOH . D 3 HOH A 85 216 150 HOH HOH . D 3 HOH A 86 217 152 HOH HOH . D 3 HOH A 87 218 154 HOH HOH . E 3 HOH B 1 131 3 HOH HOH . E 3 HOH B 2 132 6 HOH HOH . E 3 HOH B 3 133 8 HOH HOH . E 3 HOH B 4 134 10 HOH HOH . E 3 HOH B 5 135 13 HOH HOH . E 3 HOH B 6 136 14 HOH HOH . E 3 HOH B 7 137 15 HOH HOH . E 3 HOH B 8 138 17 HOH HOH . E 3 HOH B 9 139 18 HOH HOH . E 3 HOH B 10 140 20 HOH HOH . E 3 HOH B 11 141 21 HOH HOH . E 3 HOH B 12 142 23 HOH HOH . E 3 HOH B 13 143 26 HOH HOH . E 3 HOH B 14 144 27 HOH HOH . E 3 HOH B 15 145 30 HOH HOH . E 3 HOH B 16 146 32 HOH HOH . E 3 HOH B 17 147 33 HOH HOH . E 3 HOH B 18 148 34 HOH HOH . E 3 HOH B 19 149 35 HOH HOH . E 3 HOH B 20 150 36 HOH HOH . E 3 HOH B 21 151 38 HOH HOH . E 3 HOH B 22 152 39 HOH HOH . E 3 HOH B 23 153 45 HOH HOH . E 3 HOH B 24 154 46 HOH HOH . E 3 HOH B 25 155 48 HOH HOH . E 3 HOH B 26 156 49 HOH HOH . E 3 HOH B 27 157 51 HOH HOH . E 3 HOH B 28 158 52 HOH HOH . E 3 HOH B 29 159 53 HOH HOH . E 3 HOH B 30 160 54 HOH HOH . E 3 HOH B 31 161 55 HOH HOH . E 3 HOH B 32 162 65 HOH HOH . E 3 HOH B 33 163 73 HOH HOH . E 3 HOH B 34 164 75 HOH HOH . E 3 HOH B 35 165 81 HOH HOH . E 3 HOH B 36 166 82 HOH HOH . E 3 HOH B 37 167 83 HOH HOH . E 3 HOH B 38 168 85 HOH HOH . E 3 HOH B 39 169 87 HOH HOH . E 3 HOH B 40 170 89 HOH HOH . E 3 HOH B 41 171 93 HOH HOH . E 3 HOH B 42 172 94 HOH HOH . E 3 HOH B 43 173 96 HOH HOH . E 3 HOH B 44 174 97 HOH HOH . E 3 HOH B 45 175 99 HOH HOH . E 3 HOH B 46 176 102 HOH HOH . E 3 HOH B 47 177 104 HOH HOH . E 3 HOH B 48 178 107 HOH HOH . E 3 HOH B 49 179 108 HOH HOH . E 3 HOH B 50 180 113 HOH HOH . E 3 HOH B 51 181 115 HOH HOH . E 3 HOH B 52 182 116 HOH HOH . E 3 HOH B 53 183 118 HOH HOH . E 3 HOH B 54 184 120 HOH HOH . E 3 HOH B 55 185 121 HOH HOH . E 3 HOH B 56 186 123 HOH HOH . E 3 HOH B 57 187 124 HOH HOH . E 3 HOH B 58 188 125 HOH HOH . E 3 HOH B 59 189 127 HOH HOH . E 3 HOH B 60 190 129 HOH HOH . E 3 HOH B 61 191 135 HOH HOH . E 3 HOH B 62 192 138 HOH HOH . E 3 HOH B 63 193 140 HOH HOH . E 3 HOH B 64 194 149 HOH HOH . E 3 HOH B 65 195 151 HOH HOH . E 3 HOH B 66 196 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 35.668 5.125 38.124 1 32.9 ? C1 EDO 131 A 1 HETATM 2 O O1 EDO . . . C 2 34.879 4.01 38.799 1 40.92 ? O1 EDO 131 A 1 HETATM 3 C C2 EDO . . . C 2 36.46 5.962 39.103 1 30.31 ? C2 EDO 131 A 1 HETATM 4 O O2 EDO . . . C 2 37.437 5.066 39.936 1 18.86 ? O2 EDO 131 A 1 # _model_server_stats.io_time_ms 112 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #