data_1VRW # _model_server_result.job_id i4R3pmGl3admAr5q8JkfiA _model_server_result.datetime_utc '2024-12-29 02:09:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vrw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1VRW # _exptl.entry_id 1VRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VRW _cell.length_a 133.28 _cell.length_b 133.28 _cell.length_c 83.828 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 A,C 3 1 B,D 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 133.28 133.28 41.914 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 235 n n PA O2A NAI sing 236 n n PA O5B NAI sing 237 n n PA O3 NAI sing 238 n n O2A HOA2 NAI sing 239 n n O5B C5B NAI sing 240 n n C5B C4B NAI sing 241 n n C5B H51A NAI sing 242 n n C5B H52A NAI sing 243 n n C4B O4B NAI sing 244 n n C4B C3B NAI sing 245 n n C4B H4B NAI sing 246 n n O4B C1B NAI sing 247 n n C3B O3B NAI sing 248 n n C3B C2B NAI sing 249 n n C3B H3B NAI sing 250 n n O3B HO3A NAI sing 251 n n C2B O2B NAI sing 252 n n C2B C1B NAI sing 253 n n C2B H2B NAI sing 254 n n O2B HO2A NAI sing 255 n n C1B N9A NAI sing 256 n n C1B H1B NAI sing 257 n n N9A C8A NAI sing 258 n y N9A C4A NAI sing 259 n y C8A N7A NAI doub 260 n y C8A H8A NAI sing 261 n n N7A C5A NAI sing 262 n y C5A C6A NAI sing 263 n y C5A C4A NAI doub 264 n y C6A N6A NAI sing 265 n n C6A N1A NAI doub 266 n y N6A H61A NAI sing 267 n n N6A H62A NAI sing 268 n n N1A C2A NAI sing 269 n y C2A N3A NAI doub 270 n y C2A H2A NAI sing 271 n n N3A C4A NAI sing 272 n y O3 PN NAI sing 273 n n PN O1N NAI sing 274 n n PN O2N NAI doub 275 n n PN O5D NAI sing 276 n n O1N HO1N NAI sing 277 n n O5D C5D NAI sing 278 n n C5D C4D NAI sing 279 n n C5D H51N NAI sing 280 n n C5D H52N NAI sing 281 n n C4D O4D NAI sing 282 n n C4D C3D NAI sing 283 n n C4D H4D NAI sing 284 n n O4D C1D NAI sing 285 n n C3D O3D NAI sing 286 n n C3D C2D NAI sing 287 n n C3D H3D NAI sing 288 n n O3D HO3N NAI sing 289 n n C2D O2D NAI sing 290 n n C2D C1D NAI sing 291 n n C2D H2D NAI sing 292 n n O2D HO2N NAI sing 293 n n C1D N1N NAI sing 294 n n C1D H1D NAI sing 295 n n N1N C2N NAI sing 296 n n N1N C6N NAI sing 297 n n C2N C3N NAI doub 298 n n C2N H2N NAI sing 299 n n C3N C7N NAI sing 300 n n C3N C4N NAI sing 301 n n C7N O7N NAI doub 302 n n C7N N7N NAI sing 303 n n N7N H71N NAI sing 304 n n N7N H72N NAI sing 305 n n C4N C5N NAI sing 306 n n C4N H4N NAI sing 307 n n C4N H42N NAI sing 308 n n C5N C6N NAI doub 309 n n C5N H5N NAI sing 310 n n C6N H6N NAI sing 311 n n # _atom_sites.entry_id 1VRW _atom_sites.fract_transf_matrix[1][1] 0.007503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 501 450 NAI NAD . D 2 NAI B 1 501 550 NAI NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . C 2 51.436 89.579 40.744 1 38.63 ? PA NAI 501 A 1 HETATM 2 O O1A NAI . . . C 2 51.109 89.564 42.208 1 39.1 ? O1A NAI 501 A 1 HETATM 3 O O2A NAI . . . C 2 52.894 89.707 40.336 1 39.26 ? O2A NAI 501 A 1 HETATM 4 O O5B NAI . . . C 2 50.78 88.19 40.159 1 39.75 ? O5B NAI 501 A 1 HETATM 5 C C5B NAI . . . C 2 51.166 87.412 38.999 1 39.26 ? C5B NAI 501 A 1 HETATM 6 C C4B NAI . . . C 2 51.494 86.011 39.417 1 38.51 ? C4B NAI 501 A 1 HETATM 7 O O4B NAI . . . C 2 51.68 85.066 38.313 1 37.91 ? O4B NAI 501 A 1 HETATM 8 C C3B NAI . . . C 2 52.781 85.94 40.252 1 38.47 ? C3B NAI 501 A 1 HETATM 9 O O3B NAI . . . C 2 52.348 85.773 41.626 1 41.5 ? O3B NAI 501 A 1 HETATM 10 C C2B NAI . . . C 2 53.569 84.741 39.696 1 37.92 ? C2B NAI 501 A 1 HETATM 11 O O2B NAI . . . C 2 54.085 83.969 40.751 1 37.88 ? O2B NAI 501 A 1 HETATM 12 C C1B NAI . . . C 2 52.556 84.017 38.766 1 37.75 ? C1B NAI 501 A 1 HETATM 13 N N9A NAI . . . C 2 53.177 83.385 37.565 1 36.59 ? N9A NAI 501 A 1 HETATM 14 C C8A NAI . . . C 2 54.041 83.618 36.51 1 35.99 ? C8A NAI 501 A 1 HETATM 15 N N7A NAI . . . C 2 54.234 82.604 35.678 1 36.81 ? N7A NAI 501 A 1 HETATM 16 C C5A NAI . . . C 2 53.434 81.599 36.211 1 34.46 ? C5A NAI 501 A 1 HETATM 17 C C6A NAI . . . C 2 53.198 80.274 35.819 1 32.85 ? C6A NAI 501 A 1 HETATM 18 N N6A NAI . . . C 2 53.768 79.706 34.772 1 32.18 ? N6A NAI 501 A 1 HETATM 19 N N1A NAI . . . C 2 52.351 79.532 36.564 1 31.92 ? N1A NAI 501 A 1 HETATM 20 C C2A NAI . . . C 2 51.719 80.097 37.613 1 32.88 ? C2A NAI 501 A 1 HETATM 21 N N3A NAI . . . C 2 51.91 81.311 38.143 1 33.21 ? N3A NAI 501 A 1 HETATM 22 C C4A NAI . . . C 2 52.774 82.055 37.368 1 35.05 ? C4A NAI 501 A 1 HETATM 23 O O3 NAI . . . C 2 50.927 90.692 39.842 1 37.43 ? O3 NAI 501 A 1 HETATM 24 P PN NAI . . . C 2 49.587 91.287 39.584 1 30.4 ? PN NAI 501 A 1 HETATM 25 O O1N NAI . . . C 2 48.714 91.374 40.805 1 32.74 ? O1N NAI 501 A 1 HETATM 26 O O2N NAI . . . C 2 49.884 92.534 38.824 1 33.17 ? O2N NAI 501 A 1 HETATM 27 O O5D NAI . . . C 2 49.049 90.394 38.366 1 31.4 ? O5D NAI 501 A 1 HETATM 28 C C5D NAI . . . C 2 47.912 89.525 38.426 1 28.02 ? C5D NAI 501 A 1 HETATM 29 C C4D NAI . . . C 2 47.061 89.764 37.164 1 25.74 ? C4D NAI 501 A 1 HETATM 30 O O4D NAI . . . C 2 46.514 91.135 37.165 1 26.26 ? O4D NAI 501 A 1 HETATM 31 C C3D NAI . . . C 2 47.911 89.597 35.9 1 25.96 ? C3D NAI 501 A 1 HETATM 32 O O3D NAI . . . C 2 47.202 88.759 35.049 1 21.63 ? O3D NAI 501 A 1 HETATM 33 C C2D NAI . . . C 2 48.019 90.999 35.399 1 25.51 ? C2D NAI 501 A 1 HETATM 34 O O2D NAI . . . C 2 48.193 91.043 34.011 1 26.72 ? O2D NAI 501 A 1 HETATM 35 C C1D NAI . . . C 2 46.708 91.601 35.82 1 25.98 ? C1D NAI 501 A 1 HETATM 36 N N1N NAI . . . C 2 46.663 93.072 35.755 1 26.34 ? N1N NAI 501 A 1 HETATM 37 C C2N NAI . . . C 2 47.626 93.806 36.507 1 25.93 ? C2N NAI 501 A 1 HETATM 38 C C3N NAI . . . C 2 47.81 95.187 36.557 1 26.92 ? C3N NAI 501 A 1 HETATM 39 C C7N NAI . . . C 2 48.797 95.944 37.365 1 27.45 ? C7N NAI 501 A 1 HETATM 40 O O7N NAI . . . C 2 49.04 97.254 37.21 1 28.62 ? O7N NAI 501 A 1 HETATM 41 N N7N NAI . . . C 2 49.539 95.419 38.331 1 26.94 ? N7N NAI 501 A 1 HETATM 42 C C4N NAI . . . C 2 46.794 95.8 35.823 1 26.09 ? C4N NAI 501 A 1 HETATM 43 C C5N NAI . . . C 2 45.715 95.179 35.091 1 26.39 ? C5N NAI 501 A 1 HETATM 44 C C6N NAI . . . C 2 45.673 93.731 35.055 1 25.49 ? C6N NAI 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #