data_1VRW
#
_model_server_result.job_id            9mkkq-dzJiiP9leoh78umg 
_model_server_result.datetime_utc      '2024-11-01 14:38:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vrw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    1VRW 
#
_exptl.entry_id    1VRW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VRW 
_cell.length_a            133.28 
_cell.length_b            133.28 
_cell.length_c            83.828 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VRW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
A,C 3 1 
B,D 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 133.28 133.28 41.914 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 235 n n 
PA O2A NAI sing 236 n n 
PA O5B NAI sing 237 n n 
PA O3 NAI sing 238 n n 
O2A HOA2 NAI sing 239 n n 
O5B C5B NAI sing 240 n n 
C5B C4B NAI sing 241 n n 
C5B H51A NAI sing 242 n n 
C5B H52A NAI sing 243 n n 
C4B O4B NAI sing 244 n n 
C4B C3B NAI sing 245 n n 
C4B H4B NAI sing 246 n n 
O4B C1B NAI sing 247 n n 
C3B O3B NAI sing 248 n n 
C3B C2B NAI sing 249 n n 
C3B H3B NAI sing 250 n n 
O3B HO3A NAI sing 251 n n 
C2B O2B NAI sing 252 n n 
C2B C1B NAI sing 253 n n 
C2B H2B NAI sing 254 n n 
O2B HO2A NAI sing 255 n n 
C1B N9A NAI sing 256 n n 
C1B H1B NAI sing 257 n n 
N9A C8A NAI sing 258 n y 
N9A C4A NAI sing 259 n y 
C8A N7A NAI doub 260 n y 
C8A H8A NAI sing 261 n n 
N7A C5A NAI sing 262 n y 
C5A C6A NAI sing 263 n y 
C5A C4A NAI doub 264 n y 
C6A N6A NAI sing 265 n n 
C6A N1A NAI doub 266 n y 
N6A H61A NAI sing 267 n n 
N6A H62A NAI sing 268 n n 
N1A C2A NAI sing 269 n y 
C2A N3A NAI doub 270 n y 
C2A H2A NAI sing 271 n n 
N3A C4A NAI sing 272 n y 
O3 PN NAI sing 273 n n 
PN O1N NAI sing 274 n n 
PN O2N NAI doub 275 n n 
PN O5D NAI sing 276 n n 
O1N HO1N NAI sing 277 n n 
O5D C5D NAI sing 278 n n 
C5D C4D NAI sing 279 n n 
C5D H51N NAI sing 280 n n 
C5D H52N NAI sing 281 n n 
C4D O4D NAI sing 282 n n 
C4D C3D NAI sing 283 n n 
C4D H4D NAI sing 284 n n 
O4D C1D NAI sing 285 n n 
C3D O3D NAI sing 286 n n 
C3D C2D NAI sing 287 n n 
C3D H3D NAI sing 288 n n 
O3D HO3N NAI sing 289 n n 
C2D O2D NAI sing 290 n n 
C2D C1D NAI sing 291 n n 
C2D H2D NAI sing 292 n n 
O2D HO2N NAI sing 293 n n 
C1D N1N NAI sing 294 n n 
C1D H1D NAI sing 295 n n 
N1N C2N NAI sing 296 n n 
N1N C6N NAI sing 297 n n 
C2N C3N NAI doub 298 n n 
C2N H2N NAI sing 299 n n 
C3N C7N NAI sing 300 n n 
C3N C4N NAI sing 301 n n 
C7N O7N NAI doub 302 n n 
C7N N7N NAI sing 303 n n 
N7N H71N NAI sing 304 n n 
N7N H72N NAI sing 305 n n 
C4N C5N NAI sing 306 n n 
C4N H4N NAI sing 307 n n 
C4N H42N NAI sing 308 n n 
C5N C6N NAI doub 309 n n 
C5N H5N NAI sing 310 n n 
C6N H6N NAI sing 311 n n 
#
_atom_sites.entry_id                     1VRW 
_atom_sites.fract_transf_matrix[1][1]    0.007503 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007503 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011929 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAI A 1 501 450 NAI NAD . 
D 2 NAI B 1 501 550 NAI NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . D 2 8.47 100.613 32.21 1 24.36 ? PA NAI 501 B 1 
HETATM 2 O O1A NAI . . . D 2 7.989 99.827 33.386 1 27.31 ? O1A NAI 501 B 1 
HETATM 3 O O2A NAI . . . D 2 7.46 100.982 31.155 1 28.39 ? O2A NAI 501 B 1 
HETATM 4 O O5B NAI . . . D 2 9.157 101.937 32.866 1 28.53 ? O5B NAI 501 B 1 
HETATM 5 C C5B NAI . . . D 2 9.381 103.235 32.277 1 27.47 ? C5B NAI 501 B 1 
HETATM 6 C C4B NAI . . . D 2 8.677 104.274 33.087 1 27.47 ? C4B NAI 501 B 1 
HETATM 7 O O4B NAI . . . D 2 8.915 105.642 32.625 1 27.29 ? O4B NAI 501 B 1 
HETATM 8 C C3B NAI . . . D 2 7.155 104.08 33.073 1 26.59 ? C3B NAI 501 B 1 
HETATM 9 O O3B NAI . . . D 2 6.824 103.557 34.383 1 29.35 ? O3B NAI 501 B 1 
HETATM 10 C C2B NAI . . . D 2 6.568 105.47 32.801 1 27.44 ? C2B NAI 501 B 1 
HETATM 11 O O2B NAI . . . D 2 5.47 105.701 33.644 1 28.56 ? O2B NAI 501 B 1 
HETATM 12 C C1B NAI . . . D 2 7.778 106.436 32.978 1 26.16 ? C1B NAI 501 B 1 
HETATM 13 N N9A NAI . . . D 2 7.744 107.599 32.065 1 24.39 ? N9A NAI 501 B 1 
HETATM 14 C C8A NAI . . . D 2 7.544 107.957 30.749 1 23.42 ? C8A NAI 501 B 1 
HETATM 15 N N7A NAI . . . D 2 7.639 109.245 30.48 1 24.46 ? N7A NAI 501 B 1 
HETATM 16 C C5A NAI . . . D 2 7.933 109.808 31.712 1 21.81 ? C5A NAI 501 B 1 
HETATM 17 C C6A NAI . . . D 2 8.137 111.128 32.107 1 21.77 ? C6A NAI 501 B 1 
HETATM 18 N N6A NAI . . . D 2 8.064 112.154 31.272 1 19.76 ? N6A NAI 501 B 1 
HETATM 19 N N1A NAI . . . D 2 8.408 111.369 33.418 1 22.46 ? N1A NAI 501 B 1 
HETATM 20 C C2A NAI . . . D 2 8.529 110.329 34.277 1 18.88 ? C2A NAI 501 B 1 
HETATM 21 N N3A NAI . . . D 2 8.277 109.038 34.047 1 20.33 ? N3A NAI 501 B 1 
HETATM 22 C C4A NAI . . . D 2 8.006 108.819 32.706 1 23.03 ? C4A NAI 501 B 1 
HETATM 23 O O3 NAI . . . D 2 9.52 100.046 31.256 1 26.56 ? O3 NAI 501 B 1 
HETATM 24 P PN NAI . . . D 2 10.886 99.438 31.444 1 21.6 ? PN NAI 501 B 1 
HETATM 25 O O1N NAI . . . D 2 11.066 98.728 32.753 1 22.98 ? O1N NAI 501 B 1 
HETATM 26 O O2N NAI . . . D 2 11.149 98.683 30.188 1 20.72 ? O2N NAI 501 B 1 
HETATM 27 O O5D NAI . . . D 2 11.841 100.695 31.166 1 20.8 ? O5D NAI 501 B 1 
HETATM 28 C C5D NAI . . . D 2 12.7 101.307 32.124 1 19.83 ? C5D NAI 501 B 1 
HETATM 29 C C4D NAI . . . D 2 14.045 101.592 31.423 1 21.53 ? C4D NAI 501 B 1 
HETATM 30 O O4D NAI . . . D 2 14.687 100.328 31.021 1 21.45 ? O4D NAI 501 B 1 
HETATM 31 C C3D NAI . . . D 2 13.837 102.436 30.159 1 21.07 ? C3D NAI 501 B 1 
HETATM 32 O O3D NAI . . . D 2 14.78 103.457 30.208 1 18.64 ? O3D NAI 501 B 1 
HETATM 33 C C2D NAI . . . D 2 14.089 101.445 29.072 1 21.14 ? C2D NAI 501 B 1 
HETATM 34 O O2D NAI . . . D 2 14.524 102.074 27.897 1 20.48 ? O2D NAI 501 B 1 
HETATM 35 C C1D NAI . . . D 2 15.148 100.56 29.687 1 21 ? C1D NAI 501 B 1 
HETATM 36 N N1N NAI . . . D 2 15.379 99.281 29.002 1 21.91 ? N1N NAI 501 B 1 
HETATM 37 C C2N NAI . . . D 2 14.278 98.407 28.818 1 21.57 ? C2N NAI 501 B 1 
HETATM 38 C C3N NAI . . . D 2 14.258 97.184 28.156 1 22.64 ? C3N NAI 501 B 1 
HETATM 39 C C7N NAI . . . D 2 13.124 96.271 27.998 1 23.41 ? C7N NAI 501 B 1 
HETATM 40 O O7N NAI . . . D 2 13.136 95.212 27.179 1 23.55 ? O7N NAI 501 B 1 
HETATM 41 N N7N NAI . . . D 2 11.98 96.387 28.658 1 26.1 ? N7N NAI 501 B 1 
HETATM 42 C C4N NAI . . . D 2 15.554 96.848 27.778 1 21 ? C4N NAI 501 B 1 
HETATM 43 C C5N NAI . . . D 2 16.762 97.599 27.981 1 20.85 ? C5N NAI 501 B 1 
HETATM 44 C C6N NAI . . . D 2 16.645 98.894 28.619 1 20.78 ? C6N NAI 501 B 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           44 
#