data_1VS1 # _model_server_result.job_id o3yiW3-Xibkeglur2F_D6w _model_server_result.datetime_utc '2024-11-24 11:30:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vs1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":305}' # _entry.id 1VS1 # _exptl.entry_id 1VS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.042 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOENOLPYRUVATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.61 _cell.angle_gamma 90 _cell.entry_id 1VS1 _cell.length_a 54.768 _cell.length_b 130.404 _cell.length_c 78.362 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc2 A NE2 HIS 216 A HIS 216 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc3 A OE2 GLU 242 A GLU 242 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc4 A OD1 ASP 253 A ASP 253 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc5 E MN MN . A MN 301 1_555 M O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc6 B SG CYS 46 B CYS 46 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc7 B NE2 HIS 216 B HIS 216 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc8 B OE2 GLU 242 B GLU 242 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc9 B OD1 ASP 253 B ASP 253 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc10 G MN MN . B MN 301 1_555 N O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc11 C SG CYS 46 C CYS 46 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc12 C NE2 HIS 216 C HIS 216 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc13 C OE2 GLU 242 C GLU 242 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc14 C OD1 ASP 253 C ASP 253 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc15 I MN MN . C MN 301 1_555 O O HOH . C HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc16 D SG CYS 46 D CYS 46 1_555 K MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc17 D NE2 HIS 216 D HIS 216 1_555 K MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc18 D OE2 GLU 242 D GLU 242 1_555 K MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc19 D OD2 ASP 253 D ASP 253 1_555 K MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc20 K MN MN . D MN 301 1_555 P O HOH . D HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? # _chem_comp.formula 'C3 H5 O6 P' _chem_comp.formula_weight 168.042 _chem_comp.id PEP _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOENOLPYRUVATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEP doub 237 n n C1 O2' PEP sing 238 n n C1 C2 PEP sing 239 n n O2' HO2 PEP sing 240 n n C2 C3 PEP doub 241 n n C2 O2 PEP sing 242 n n C3 H31 PEP sing 243 n n C3 H32 PEP sing 244 n n O2 P PEP sing 245 n n P O1P PEP doub 246 n n P O2P PEP sing 247 n n P O3P PEP sing 248 n n O2P HOP2 PEP sing 249 n n O3P HOP3 PEP sing 250 n n # _atom_sites.entry_id 1VS1 _atom_sites.fract_transf_matrix[1][1] 0.018259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006867 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 301 301 MN MN . F 3 PEP A 1 302 302 PEP PEP . G 2 MN B 1 301 301 MN MN . H 3 PEP B 1 303 302 PEP PEP . I 2 MN C 1 301 301 MN MN . J 3 PEP C 1 304 302 PEP PEP . K 2 MN D 1 301 301 MN MN . L 3 PEP D 1 305 302 PEP PEP . M 4 HOH A 1 303 5 HOH HOH . M 4 HOH A 2 304 8 HOH HOH . M 4 HOH A 3 305 10 HOH HOH . M 4 HOH A 4 306 12 HOH HOH . M 4 HOH A 5 307 19 HOH HOH . M 4 HOH A 6 308 21 HOH HOH . M 4 HOH A 7 309 27 HOH HOH . M 4 HOH A 8 310 29 HOH HOH . M 4 HOH A 9 311 32 HOH HOH . M 4 HOH A 10 312 35 HOH HOH . M 4 HOH A 11 313 37 HOH HOH . M 4 HOH A 12 314 40 HOH HOH . M 4 HOH A 13 315 57 HOH HOH . M 4 HOH A 14 316 58 HOH HOH . M 4 HOH A 15 317 64 HOH HOH . M 4 HOH A 16 318 65 HOH HOH . M 4 HOH A 17 319 66 HOH HOH . M 4 HOH A 18 320 84 HOH HOH . M 4 HOH A 19 321 90 HOH HOH . M 4 HOH A 20 322 91 HOH HOH . M 4 HOH A 21 323 93 HOH HOH . M 4 HOH A 22 324 98 HOH HOH . M 4 HOH A 23 325 100 HOH HOH . M 4 HOH A 24 326 102 HOH HOH . M 4 HOH A 25 327 103 HOH HOH . M 4 HOH A 26 328 104 HOH HOH . M 4 HOH A 27 329 109 HOH HOH . M 4 HOH A 28 330 111 HOH HOH . M 4 HOH A 29 331 112 HOH HOH . M 4 HOH A 30 332 113 HOH HOH . M 4 HOH A 31 333 115 HOH HOH . M 4 HOH A 32 334 117 HOH HOH . M 4 HOH A 33 335 118 HOH HOH . M 4 HOH A 34 336 123 HOH HOH . M 4 HOH A 35 337 127 HOH HOH . M 4 HOH A 36 338 132 HOH HOH . M 4 HOH A 37 339 135 HOH HOH . M 4 HOH A 38 340 137 HOH HOH . M 4 HOH A 39 341 143 HOH HOH . M 4 HOH A 40 342 145 HOH HOH . M 4 HOH A 41 343 146 HOH HOH . M 4 HOH A 42 344 161 HOH HOH . M 4 HOH A 43 345 164 HOH HOH . M 4 HOH A 44 346 174 HOH HOH . M 4 HOH A 45 347 179 HOH HOH . M 4 HOH A 46 348 184 HOH HOH . M 4 HOH A 47 349 188 HOH HOH . M 4 HOH A 48 350 189 HOH HOH . M 4 HOH A 49 351 191 HOH HOH . N 4 HOH B 1 304 2 HOH HOH . N 4 HOH B 2 305 4 HOH HOH . N 4 HOH B 3 306 6 HOH HOH . N 4 HOH B 4 307 20 HOH HOH . N 4 HOH B 5 308 23 HOH HOH . N 4 HOH B 6 309 24 HOH HOH . N 4 HOH B 7 310 31 HOH HOH . N 4 HOH B 8 311 33 HOH HOH . N 4 HOH B 9 312 41 HOH HOH . N 4 HOH B 10 313 42 HOH HOH . N 4 HOH B 11 314 43 HOH HOH . N 4 HOH B 12 315 44 HOH HOH . N 4 HOH B 13 316 48 HOH HOH . N 4 HOH B 14 317 54 HOH HOH . N 4 HOH B 15 318 55 HOH HOH . N 4 HOH B 16 319 67 HOH HOH . N 4 HOH B 17 320 68 HOH HOH . N 4 HOH B 18 321 69 HOH HOH . N 4 HOH B 19 322 70 HOH HOH . N 4 HOH B 20 323 76 HOH HOH . N 4 HOH B 21 324 79 HOH HOH . N 4 HOH B 22 325 80 HOH HOH . N 4 HOH B 23 326 89 HOH HOH . N 4 HOH B 24 327 108 HOH HOH . N 4 HOH B 25 328 110 HOH HOH . N 4 HOH B 26 329 114 HOH HOH . N 4 HOH B 27 330 124 HOH HOH . N 4 HOH B 28 331 125 HOH HOH . N 4 HOH B 29 332 126 HOH HOH . N 4 HOH B 30 333 129 HOH HOH . N 4 HOH B 31 334 131 HOH HOH . N 4 HOH B 32 335 134 HOH HOH . N 4 HOH B 33 336 139 HOH HOH . N 4 HOH B 34 337 142 HOH HOH . N 4 HOH B 35 338 144 HOH HOH . N 4 HOH B 36 339 150 HOH HOH . N 4 HOH B 37 340 151 HOH HOH . N 4 HOH B 38 341 157 HOH HOH . N 4 HOH B 39 342 162 HOH HOH . N 4 HOH B 40 343 165 HOH HOH . N 4 HOH B 41 344 176 HOH HOH . N 4 HOH B 42 345 182 HOH HOH . N 4 HOH B 43 346 186 HOH HOH . N 4 HOH B 44 347 187 HOH HOH . N 4 HOH B 45 348 190 HOH HOH . O 4 HOH C 1 305 7 HOH HOH . O 4 HOH C 2 306 9 HOH HOH . O 4 HOH C 3 307 14 HOH HOH . O 4 HOH C 4 308 18 HOH HOH . O 4 HOH C 5 309 22 HOH HOH . O 4 HOH C 6 310 28 HOH HOH . O 4 HOH C 7 311 30 HOH HOH . O 4 HOH C 8 312 36 HOH HOH . O 4 HOH C 9 313 39 HOH HOH . O 4 HOH C 10 314 49 HOH HOH . O 4 HOH C 11 315 50 HOH HOH . O 4 HOH C 12 316 51 HOH HOH . O 4 HOH C 13 317 52 HOH HOH . O 4 HOH C 14 318 56 HOH HOH . O 4 HOH C 15 319 59 HOH HOH . O 4 HOH C 16 320 60 HOH HOH . O 4 HOH C 17 321 63 HOH HOH . O 4 HOH C 18 322 71 HOH HOH . O 4 HOH C 19 323 74 HOH HOH . O 4 HOH C 20 324 75 HOH HOH . O 4 HOH C 21 325 77 HOH HOH . O 4 HOH C 22 326 82 HOH HOH . O 4 HOH C 23 327 88 HOH HOH . O 4 HOH C 24 328 92 HOH HOH . O 4 HOH C 25 329 94 HOH HOH . O 4 HOH C 26 330 99 HOH HOH . O 4 HOH C 27 331 106 HOH HOH . O 4 HOH C 28 332 119 HOH HOH . O 4 HOH C 29 333 121 HOH HOH . O 4 HOH C 30 334 130 HOH HOH . O 4 HOH C 31 335 141 HOH HOH . O 4 HOH C 32 336 152 HOH HOH . O 4 HOH C 33 337 153 HOH HOH . O 4 HOH C 34 338 156 HOH HOH . O 4 HOH C 35 339 159 HOH HOH . O 4 HOH C 36 340 167 HOH HOH . O 4 HOH C 37 341 172 HOH HOH . O 4 HOH C 38 342 173 HOH HOH . O 4 HOH C 39 343 177 HOH HOH . O 4 HOH C 40 344 181 HOH HOH . P 4 HOH D 1 306 1 HOH HOH . P 4 HOH D 2 307 3 HOH HOH . P 4 HOH D 3 308 11 HOH HOH . P 4 HOH D 4 309 13 HOH HOH . P 4 HOH D 5 310 15 HOH HOH . P 4 HOH D 6 311 16 HOH HOH . P 4 HOH D 7 312 17 HOH HOH . P 4 HOH D 8 313 25 HOH HOH . P 4 HOH D 9 314 26 HOH HOH . P 4 HOH D 10 315 34 HOH HOH . P 4 HOH D 11 316 38 HOH HOH . P 4 HOH D 12 317 45 HOH HOH . P 4 HOH D 13 318 46 HOH HOH . P 4 HOH D 14 319 47 HOH HOH . P 4 HOH D 15 320 53 HOH HOH . P 4 HOH D 16 321 61 HOH HOH . P 4 HOH D 17 322 62 HOH HOH . P 4 HOH D 18 323 72 HOH HOH . P 4 HOH D 19 324 73 HOH HOH . P 4 HOH D 20 325 78 HOH HOH . P 4 HOH D 21 326 81 HOH HOH . P 4 HOH D 22 327 83 HOH HOH . P 4 HOH D 23 328 85 HOH HOH . P 4 HOH D 24 329 86 HOH HOH . P 4 HOH D 25 330 87 HOH HOH . P 4 HOH D 26 331 95 HOH HOH . P 4 HOH D 27 332 96 HOH HOH . P 4 HOH D 28 333 97 HOH HOH . P 4 HOH D 29 334 101 HOH HOH . P 4 HOH D 30 335 105 HOH HOH . P 4 HOH D 31 336 107 HOH HOH . P 4 HOH D 32 337 116 HOH HOH . P 4 HOH D 33 338 120 HOH HOH . P 4 HOH D 34 339 122 HOH HOH . P 4 HOH D 35 340 128 HOH HOH . P 4 HOH D 36 341 133 HOH HOH . P 4 HOH D 37 342 136 HOH HOH . P 4 HOH D 38 343 138 HOH HOH . P 4 HOH D 39 344 140 HOH HOH . P 4 HOH D 40 345 147 HOH HOH . P 4 HOH D 41 346 148 HOH HOH . P 4 HOH D 42 347 149 HOH HOH . P 4 HOH D 43 348 154 HOH HOH . P 4 HOH D 44 349 155 HOH HOH . P 4 HOH D 45 350 158 HOH HOH . P 4 HOH D 46 351 160 HOH HOH . P 4 HOH D 47 352 163 HOH HOH . P 4 HOH D 48 353 166 HOH HOH . P 4 HOH D 49 354 168 HOH HOH . P 4 HOH D 50 355 169 HOH HOH . P 4 HOH D 51 356 170 HOH HOH . P 4 HOH D 52 357 171 HOH HOH . P 4 HOH D 53 358 175 HOH HOH . P 4 HOH D 54 359 178 HOH HOH . P 4 HOH D 55 360 180 HOH HOH . P 4 HOH D 56 361 183 HOH HOH . P 4 HOH D 57 362 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEP . . . L 3 8.697 11.249 7.087 1 52.73 ? C1 PEP 305 D 1 HETATM 2 O O1 PEP . . . L 3 7.47 11.372 7.397 1 50.74 ? O1 PEP 305 D 1 HETATM 3 O O2' PEP . . . L 3 9.441 12.223 6.824 1 52.39 ? O2' PEP 305 D 1 HETATM 4 C C2 PEP . . . L 3 9.392 9.911 7.082 1 48.18 ? C2 PEP 305 D 1 HETATM 5 C C3 PEP . . . L 3 8.417 8.799 7.517 1 40.76 ? C3 PEP 305 D 1 HETATM 6 O O2 PEP . . . L 3 10.53 10.131 7.961 1 38.84 ? O2 PEP 305 D 1 HETATM 7 P P PEP . . . L 3 11.715 9.115 8.439 1 39.74 ? P PEP 305 D 1 HETATM 8 O O1P PEP . . . L 3 11.944 8.213 7.275 1 29.47 ? O1P PEP 305 D 1 HETATM 9 O O2P PEP . . . L 3 11.246 8.417 9.712 1 37.57 ? O2P PEP 305 D 1 HETATM 10 O O3P PEP . . . L 3 12.828 10.039 8.803 1 33.53 ? O3P PEP 305 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #