data_1VS2 # _model_server_result.job_id IbC5rlWZ2E4FjDRuT0aKKA _model_server_result.datetime_utc '2024-10-19 16:47:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vs2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":9}' # _entry.id 1VS2 # _exptl.entry_id 1VS2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 174.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-CARBOXYQUINOXALINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1VS2 _cell.length_a 40.9 _cell.length_b 40.9 _cell.length_c 80.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG NCY 3 B NCY 3 1_555 B SG NCY 7 B NCY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? covale ? covale1 C C QUI . B QUI 0 1_555 B N DSN 1 B DSN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? covale ? covale2 B C DSN 1 B DSN 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B OG DSN 1 B DSN 1 1_555 B C MVA 8 B MVA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale4 B C ALA 2 B ALA 2 1_555 B N NCY 3 B NCY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale5 B C NCY 3 B NCY 3 1_555 B N MVA 4 B MVA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale6 B C MVA 4 B MVA 4 1_555 B OG DSN 5 B DSN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? covale ? covale7 B C DSN 5 B DSN 5 1_555 B N ALA 6 B ALA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale8 B N DSN 5 B DSN 5 1_555 D C QUI . B QUI 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale9 B C ALA 6 B ALA 6 1_555 B N NCY 7 B NCY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale10 B C NCY 7 B NCY 7 1_555 B N MVA 8 B MVA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? hydrog 'DG-DC PAIR' hydrog1 A O6 DG 1 A DG 1 1_555 A N4 DC 8 A DC 8 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N3 DC 2 A DC 2 1_555 A N1 DG 7 A DG 7 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N4 DC 2 A DC 2 1_555 A O6 DG 7 A DG 7 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O2 DC 2 A DC 2 1_555 A N2 DG 7 A DG 7 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DG 3 A DG 3 1_555 A N3 DC 6 A DC 6 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N2 DG 3 A DG 3 1_555 A O2 DC 6 A DC 6 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O6 DG 3 A DG 3 1_555 A N4 DC 6 A DC 6 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog8 A N3 DT 4 A DT 4 1_555 A N7 DA 5 A DA 5 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog9 A O4 DT 4 A DT 4 1_555 A N6 DA 5 A DA 5 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog10 A N6 DA 5 A DA 5 1_555 A O4 DT 4 A DT 4 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog11 A N7 DA 5 A DA 5 1_555 A N3 DT 4 A DT 4 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 6 A DC 6 1_555 A N1 DG 3 A DG 3 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 6 A DC 6 1_555 A O6 DG 3 A DG 3 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 6 A DC 6 1_555 A N2 DG 3 A DG 3 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 7 A DG 7 1_555 A N3 DC 2 A DC 2 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 7 A DG 7 1_555 A O2 DC 2 A DC 2 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 7 A DG 7 1_555 A N4 DC 2 A DC 2 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog18 A N4 DC 8 A DC 8 1_555 A O6 DG 1 A DG 1 9_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H6 N2 O2' _chem_comp.formula_weight 174.156 _chem_comp.id QUI _chem_comp.mon_nstd_flag . _chem_comp.name 2-CARBOXYQUINOXALINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 QUI doub 212 n y N1 C9 QUI sing 213 n y C2 C3 QUI sing 214 n y C2 C QUI sing 215 n n C3 N4 QUI doub 216 n y C3 H3 QUI sing 217 n n N4 C10 QUI sing 218 n y C5 C6 QUI doub 219 n y C5 C10 QUI sing 220 n y C5 H5 QUI sing 221 n n C6 C7 QUI sing 222 n y C6 H6 QUI sing 223 n n C7 C8 QUI doub 224 n y C7 H7 QUI sing 225 n n C8 C9 QUI sing 226 n y C8 H8 QUI sing 227 n n C9 C10 QUI doub 228 n y C O1 QUI doub 229 n n C O2 QUI sing 230 n n O2 HO2 QUI sing 231 n n # _atom_sites.entry_id 1VS2 _atom_sites.fract_transf_matrix[1][1] 0.02445 _atom_sites.fract_transf_matrix[1][2] 0.014116 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 QUI B 1 0 0 QUI QUI . D 3 QUI B 1 9 9 QUI QUI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 QUI . . . D 3 -7.258 16.708 -4.971 1 2 ? N1 QUI 9 B 1 HETATM 2 C C2 QUI . . . D 3 -8.628 16.998 -4.907 1 2.31 ? C2 QUI 9 B 1 HETATM 3 C C3 QUI . . . D 3 -9.08 18.298 -4.761 1 2 ? C3 QUI 9 B 1 HETATM 4 N N4 QUI . . . D 3 -8.127 19.34 -4.681 1 2 ? N4 QUI 9 B 1 HETATM 5 C C5 QUI . . . D 3 -5.828 20.076 -4.648 1 2 ? C5 QUI 9 B 1 HETATM 6 C C6 QUI . . . D 3 -4.462 19.779 -4.721 1 2 ? C6 QUI 9 B 1 HETATM 7 C C7 QUI . . . D 3 -4.025 18.454 -4.866 1 2 ? C7 QUI 9 B 1 HETATM 8 C C8 QUI . . . D 3 -4.975 17.445 -4.971 1 2 ? C8 QUI 9 B 1 HETATM 9 C C9 QUI . . . D 3 -6.327 17.746 -4.907 1 2 ? C9 QUI 9 B 1 HETATM 10 C C10 QUI . . . D 3 -6.759 19.053 -4.745 1 2 ? C10 QUI 9 B 1 HETATM 11 C C QUI . . . D 3 -9.542 15.819 -4.995 1 4.44 ? C QUI 9 B 1 HETATM 12 O O1 QUI . . . D 3 -10.753 16.067 -5.124 1 4.9 ? O1 QUI 9 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #