data_1VSJ # _model_server_result.job_id guCCpFMe-ralasi8S5HlUg _model_server_result.datetime_utc '2024-12-27 09:47:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vsj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":280}' # _entry.id 1VSJ # _exptl.entry_id 1VSJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VSJ _cell.length_a 66.33 _cell.length_b 66.33 _cell.length_c 80.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VSJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 80.92 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 75 A SER 124 1_555 A N OCY 76 A OCY 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C OCY 76 A OCY 125 1_555 A N PHE 77 A PHE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD1 ASP 15 A ASP 64 1_555 B CD CD . A CD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc2 A OD2 ASP 15 A ASP 64 1_555 C CD CD . A CD 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A OD2 ASP 72 A ASP 121 1_555 B CD CD . A CD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc4 A OE2 GLU 108 A GLU 157 1_555 C CD CD . A CD 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc5 A OE1 GLU 108 A GLU 157 1_555 C CD CD . A CD 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc6 B CD CD . A CD 280 1_555 E O HOH . A HOH 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc7 B CD CD . A CD 280 1_555 E O HOH . A HOH 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc8 B CD CD . A CD 280 1_555 E O HOH . A HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc9 B CD CD . A CD 280 1_555 E O HOH . A HOH 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc10 E O HOH . A HOH 283 1_555 C CD CD . A CD 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc11 C CD CD . A CD 290 1_555 E O HOH . A HOH 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1VSJ _atom_sites.fract_transf_matrix[1][1] 0.015076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 280 280 CD CD . C 2 CD A 1 290 290 CD CD . D 3 EPE A 1 261 261 EPE EPE . E 4 HOH A 1 281 281 HOH HOH . E 4 HOH A 2 282 282 HOH HOH . E 4 HOH A 3 283 283 HOH HOH . E 4 HOH A 4 284 284 HOH HOH . E 4 HOH A 5 291 291 HOH HOH . E 4 HOH A 6 292 292 HOH HOH . E 4 HOH A 7 301 301 HOH HOH . E 4 HOH A 8 302 302 HOH HOH . E 4 HOH A 9 303 303 HOH HOH . E 4 HOH A 10 304 304 HOH HOH . E 4 HOH A 11 305 305 HOH HOH . E 4 HOH A 12 306 306 HOH HOH . E 4 HOH A 13 307 307 HOH HOH . E 4 HOH A 14 308 308 HOH HOH . E 4 HOH A 15 309 309 HOH HOH . E 4 HOH A 16 310 310 HOH HOH . E 4 HOH A 17 311 311 HOH HOH . E 4 HOH A 18 312 312 HOH HOH . E 4 HOH A 19 313 313 HOH HOH . E 4 HOH A 20 314 314 HOH HOH . E 4 HOH A 21 315 315 HOH HOH . E 4 HOH A 22 316 316 HOH HOH . E 4 HOH A 23 317 317 HOH HOH . E 4 HOH A 24 318 318 HOH HOH . E 4 HOH A 25 319 319 HOH HOH . E 4 HOH A 26 320 320 HOH HOH . E 4 HOH A 27 321 321 HOH HOH . E 4 HOH A 28 322 322 HOH HOH . E 4 HOH A 29 323 323 HOH HOH . E 4 HOH A 30 324 324 HOH HOH . E 4 HOH A 31 325 325 HOH HOH . E 4 HOH A 32 326 326 HOH HOH . E 4 HOH A 33 328 328 HOH HOH . E 4 HOH A 34 329 329 HOH HOH . E 4 HOH A 35 330 330 HOH HOH . E 4 HOH A 36 331 331 HOH HOH . E 4 HOH A 37 332 332 HOH HOH . E 4 HOH A 38 333 333 HOH HOH . E 4 HOH A 39 334 334 HOH HOH . E 4 HOH A 40 336 336 HOH HOH . E 4 HOH A 41 337 337 HOH HOH . E 4 HOH A 42 338 338 HOH HOH . E 4 HOH A 43 339 339 HOH HOH . E 4 HOH A 44 340 340 HOH HOH . E 4 HOH A 45 342 342 HOH HOH . E 4 HOH A 46 343 343 HOH HOH . E 4 HOH A 47 344 344 HOH HOH . E 4 HOH A 48 345 345 HOH HOH . E 4 HOH A 49 346 346 HOH HOH . E 4 HOH A 50 347 347 HOH HOH . E 4 HOH A 51 348 348 HOH HOH . E 4 HOH A 52 349 349 HOH HOH . E 4 HOH A 53 350 350 HOH HOH . E 4 HOH A 54 352 352 HOH HOH . E 4 HOH A 55 353 353 HOH HOH . E 4 HOH A 56 354 354 HOH HOH . E 4 HOH A 57 355 355 HOH HOH . E 4 HOH A 58 356 356 HOH HOH . E 4 HOH A 59 358 358 HOH HOH . E 4 HOH A 60 360 360 HOH HOH . E 4 HOH A 61 361 361 HOH HOH . E 4 HOH A 62 362 362 HOH HOH . E 4 HOH A 63 364 364 HOH HOH . E 4 HOH A 64 366 366 HOH HOH . E 4 HOH A 65 367 367 HOH HOH . E 4 HOH A 66 368 368 HOH HOH . E 4 HOH A 67 369 369 HOH HOH . E 4 HOH A 68 370 370 HOH HOH . E 4 HOH A 69 371 371 HOH HOH . E 4 HOH A 70 373 373 HOH HOH . E 4 HOH A 71 374 374 HOH HOH . E 4 HOH A 72 375 375 HOH HOH . E 4 HOH A 73 377 377 HOH HOH . E 4 HOH A 74 378 378 HOH HOH . E 4 HOH A 75 379 379 HOH HOH . E 4 HOH A 76 381 381 HOH HOH . E 4 HOH A 77 382 382 HOH HOH . E 4 HOH A 78 383 383 HOH HOH . E 4 HOH A 79 384 384 HOH HOH . E 4 HOH A 80 385 385 HOH HOH . E 4 HOH A 81 387 387 HOH HOH . E 4 HOH A 82 388 388 HOH HOH . E 4 HOH A 83 389 389 HOH HOH . E 4 HOH A 84 391 391 HOH HOH . E 4 HOH A 85 392 392 HOH HOH . E 4 HOH A 86 394 394 HOH HOH . E 4 HOH A 87 395 395 HOH HOH . E 4 HOH A 88 396 396 HOH HOH . E 4 HOH A 89 398 398 HOH HOH . E 4 HOH A 90 399 399 HOH HOH . E 4 HOH A 91 400 400 HOH HOH . E 4 HOH A 92 401 401 HOH HOH . E 4 HOH A 93 402 402 HOH HOH . E 4 HOH A 94 404 404 HOH HOH . E 4 HOH A 95 405 405 HOH HOH . E 4 HOH A 96 406 406 HOH HOH . E 4 HOH A 97 407 407 HOH HOH . E 4 HOH A 98 408 408 HOH HOH . E 4 HOH A 99 409 409 HOH HOH . E 4 HOH A 100 410 410 HOH HOH . E 4 HOH A 101 411 411 HOH HOH . E 4 HOH A 102 413 413 HOH HOH . E 4 HOH A 103 414 414 HOH HOH . E 4 HOH A 104 415 415 HOH HOH . E 4 HOH A 105 417 417 HOH HOH . E 4 HOH A 106 418 418 HOH HOH . E 4 HOH A 107 419 419 HOH HOH . E 4 HOH A 108 420 420 HOH HOH . E 4 HOH A 109 421 421 HOH HOH . E 4 HOH A 110 422 422 HOH HOH . E 4 HOH A 111 423 423 HOH HOH . E 4 HOH A 112 424 424 HOH HOH . E 4 HOH A 113 425 425 HOH HOH . E 4 HOH A 114 426 426 HOH HOH . E 4 HOH A 115 427 427 HOH HOH . E 4 HOH A 116 428 428 HOH HOH . E 4 HOH A 117 429 429 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 52.628 _atom_site.Cartn_y 38.451 _atom_site.Cartn_z 59.514 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 280 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #