data_1VTK
#
_model_server_result.job_id            R6yCpKMXoQ1y-fyupC0YWQ 
_model_server_result.datetime_utc      '2024-11-13 14:14:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vtk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":400}' 
#
_entry.id    1VTK 
#
_exptl.entry_id    1VTK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VTK 
_cell.length_a            83.4 
_cell.length_b            83.4 
_cell.length_c            156.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VTK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 83.4 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1VTK 
_atom_sites.fract_transf_matrix[1][1]    0.01199 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01199 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 400 400 ADP ADP . 
C 3 TMP A 1 500 500 TMP TMP . 
D 4 HOH A 1 601 601 HOH HOH . 
D 4 HOH A 2 602 602 HOH HOH . 
D 4 HOH A 3 603 603 HOH HOH . 
D 4 HOH A 4 604 604 HOH HOH . 
D 4 HOH A 5 605 605 HOH HOH . 
D 4 HOH A 6 606 606 HOH HOH . 
D 4 HOH A 7 607 607 HOH HOH . 
D 4 HOH A 8 608 608 HOH HOH . 
D 4 HOH A 9 609 609 HOH HOH . 
D 4 HOH A 10 610 610 HOH HOH . 
D 4 HOH A 11 611 611 HOH HOH . 
D 4 HOH A 12 612 612 HOH HOH . 
D 4 HOH A 13 613 613 HOH HOH . 
D 4 HOH A 14 614 614 HOH HOH . 
D 4 HOH A 15 615 615 HOH HOH . 
D 4 HOH A 16 616 616 HOH HOH . 
D 4 HOH A 17 617 617 HOH HOH . 
D 4 HOH A 18 618 618 HOH HOH . 
D 4 HOH A 19 619 619 HOH HOH . 
D 4 HOH A 20 620 620 HOH HOH . 
D 4 HOH A 21 621 621 HOH HOH . 
D 4 HOH A 22 622 622 HOH HOH . 
D 4 HOH A 23 623 623 HOH HOH . 
D 4 HOH A 24 624 624 HOH HOH . 
D 4 HOH A 25 625 625 HOH HOH . 
D 4 HOH A 26 626 626 HOH HOH . 
D 4 HOH A 27 627 627 HOH HOH . 
D 4 HOH A 28 628 628 HOH HOH . 
D 4 HOH A 29 629 629 HOH HOH . 
D 4 HOH A 30 630 630 HOH HOH . 
D 4 HOH A 31 631 631 HOH HOH . 
D 4 HOH A 32 632 632 HOH HOH . 
D 4 HOH A 33 633 633 HOH HOH . 
D 4 HOH A 34 634 634 HOH HOH . 
D 4 HOH A 35 635 635 HOH HOH . 
D 4 HOH A 36 636 636 HOH HOH . 
D 4 HOH A 37 637 637 HOH HOH . 
D 4 HOH A 38 638 638 HOH HOH . 
D 4 HOH A 39 639 639 HOH HOH . 
D 4 HOH A 40 640 640 HOH HOH . 
D 4 HOH A 41 641 641 HOH HOH . 
D 4 HOH A 42 642 642 HOH HOH . 
D 4 HOH A 43 643 643 HOH HOH . 
D 4 HOH A 44 644 644 HOH HOH . 
D 4 HOH A 45 645 645 HOH HOH . 
D 4 HOH A 46 646 646 HOH HOH . 
D 4 HOH A 47 647 647 HOH HOH . 
D 4 HOH A 48 648 648 HOH HOH . 
D 4 HOH A 49 649 649 HOH HOH . 
D 4 HOH A 50 650 650 HOH HOH . 
D 4 HOH A 51 651 651 HOH HOH . 
D 4 HOH A 52 652 652 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 38.645 24.764 35.027 1 44.25 ? PB ADP 400 A 1 
HETATM 2 O O1B ADP . . . B 2 37.361 24.761 35.782 1 34.63 ? O1B ADP 400 A 1 
HETATM 3 O O2B ADP . . . B 2 39.767 24.462 35.94 1 36.12 ? O2B ADP 400 A 1 
HETATM 4 O O3B ADP . . . B 2 38.576 23.797 33.932 1 36.39 ? O3B ADP 400 A 1 
HETATM 5 P PA ADP . . . B 2 39.604 27.343 34.429 1 56.5 ? PA ADP 400 A 1 
HETATM 6 O O1A ADP . . . B 2 39.824 27.816 35.823 1 57.82 ? O1A ADP 400 A 1 
HETATM 7 O O2A ADP . . . B 2 40.85 27.358 33.627 1 58.12 ? O2A ADP 400 A 1 
HETATM 8 O O3A ADP . . . B 2 38.807 26.079 34.328 1 49.48 ? O3A ADP 400 A 1 
HETATM 9 O O5' ADP . . . B 2 38.686 28.496 33.761 1 50.67 ? O5' ADP 400 A 1 
HETATM 10 C C5' ADP . . . B 2 38.161 28.401 32.429 1 57.78 ? C5' ADP 400 A 1 
HETATM 11 C C4' ADP . . . B 2 38.039 29.798 31.794 1 60.02 ? C4' ADP 400 A 1 
HETATM 12 O O4' ADP . . . B 2 37.083 30.611 32.576 1 60.98 ? O4' ADP 400 A 1 
HETATM 13 C C3' ADP . . . B 2 39.411 30.543 31.849 1 63.31 ? C3' ADP 400 A 1 
HETATM 14 O O3' ADP . . . B 2 39.576 31.272 30.624 1 63.14 ? O3' ADP 400 A 1 
HETATM 15 C C2' ADP . . . B 2 39.331 31.502 33.025 1 66.28 ? C2' ADP 400 A 1 
HETATM 16 O O2' ADP . . . B 2 39.61 32.839 32.601 1 73.19 ? O2' ADP 400 A 1 
HETATM 17 C C1' ADP . . . B 2 37.911 31.392 33.424 1 65.61 ? C1' ADP 400 A 1 
HETATM 18 N N9 ADP . . . B 2 37.429 31.871 34.742 1 66 ? N9 ADP 400 A 1 
HETATM 19 C C8 ADP . . . B 2 37.878 31.498 35.996 1 67.55 ? C8 ADP 400 A 1 
HETATM 20 N N7 ADP . . . B 2 37.213 32.061 36.967 1 69.82 ? N7 ADP 400 A 1 
HETATM 21 C C5 ADP . . . B 2 36.258 32.863 36.398 1 66.08 ? C5 ADP 400 A 1 
HETATM 22 C C6 ADP . . . B 2 35.268 33.697 36.92 1 65.04 ? C6 ADP 400 A 1 
HETATM 23 N N6 ADP . . . B 2 35.083 33.855 38.232 1 63.23 ? N6 ADP 400 A 1 
HETATM 24 N N1 ADP . . . B 2 34.491 34.355 36.045 1 63.35 ? N1 ADP 400 A 1 
HETATM 25 C C2 ADP . . . B 2 34.696 34.182 34.74 1 64.27 ? C2 ADP 400 A 1 
HETATM 26 N N3 ADP . . . B 2 35.594 33.423 34.111 1 66.16 ? N3 ADP 400 A 1 
HETATM 27 C C4 ADP . . . B 2 36.381 32.756 34.986 1 65.74 ? C4 ADP 400 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#