data_1VWJ
#
_model_server_result.job_id            29lltnLBrw2JsowoCrB41Q 
_model_server_result.datetime_utc      '2024-11-24 05:42:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vwj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2}' 
#
_entry.id    1VWJ 
#
_exptl.entry_id    1VWJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.132 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTANOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VWJ 
_cell.length_a            94.85 
_cell.length_b            105.63 
_cell.length_c            48.14 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VWJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA octameric 8 author_and_software_defined_assembly 1 
PISA,PQS hexadecameric 16 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J 1 1,2 
A,B,C,D,E,F,G,H,I,J 2 1,3,4,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 94.85 0 0 
4 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 94.85 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG CYS 7 M CYS 1 1_555 E C6 LEA . M LEA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 
covale ? covale2 E C2 LEA . M LEA 2 1_555 C N HIS 1 M HIS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale3 C C LYS 8 M LYS 9 1_555 C N NH2 9 M NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale4 D SG CYS 7 P CYS 1 1_555 F C6 LEA . P LEA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? 
covale ? covale5 F C2 LEA . P LEA 2 1_555 D N HIS 1 P HIS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
covale ? covale6 D C LYS 8 P LYS 9 1_555 D N NH2 9 P NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.292 ? 
#
_chem_comp.formula           'C5 H10 O2' 
_chem_comp.formula_weight    102.132 
_chem_comp.id                LEA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VALERIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O2 LEA sing 173 n n 
C2 C3 LEA sing 174 n n 
C2 O1 LEA doub 175 n n 
O2 HO2 LEA sing 176 n n 
C3 C4 LEA sing 177 n n 
C3 H31 LEA sing 178 n n 
C3 H32 LEA sing 179 n n 
C4 C5 LEA sing 180 n n 
C4 H41 LEA sing 181 n n 
C4 H42 LEA sing 182 n n 
C5 C6 LEA sing 183 n n 
C5 H51 LEA sing 184 n n 
C5 H52 LEA sing 185 n n 
C6 H61 LEA sing 186 n n 
C6 H62 LEA sing 187 n n 
C6 H63 LEA sing 188 n n 
#
_atom_sites.entry_id                     1VWJ 
_atom_sites.fract_transf_matrix[1][1]    0.010543 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009467 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020773 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 LEA M 1 2 2 LEA PNO . 
F 3 LEA P 1 2 2 LEA PNO . 
G 4 HOH B 1 519 519 HOH HOH . 
G 4 HOH B 2 520 520 HOH HOH . 
G 4 HOH B 3 521 521 HOH HOH . 
G 4 HOH B 4 529 529 HOH HOH . 
G 4 HOH B 5 542 542 HOH HOH . 
G 4 HOH B 6 563 563 HOH HOH . 
G 4 HOH B 7 576 576 HOH HOH . 
G 4 HOH B 8 605 605 HOH HOH . 
G 4 HOH B 9 606 606 HOH HOH . 
G 4 HOH B 10 609 609 HOH HOH . 
G 4 HOH B 11 610 610 HOH HOH . 
G 4 HOH B 12 613 613 HOH HOH . 
G 4 HOH B 13 617 617 HOH HOH . 
G 4 HOH B 14 618 618 HOH HOH . 
G 4 HOH B 15 619 619 HOH HOH . 
G 4 HOH B 16 620 620 HOH HOH . 
G 4 HOH B 17 621 621 HOH HOH . 
G 4 HOH B 18 628 628 HOH HOH . 
G 4 HOH B 19 629 629 HOH HOH . 
G 4 HOH B 20 637 637 HOH HOH . 
G 4 HOH B 21 639 639 HOH HOH . 
G 4 HOH B 22 643 643 HOH HOH . 
G 4 HOH B 23 646 646 HOH HOH . 
G 4 HOH B 24 652 652 HOH HOH . 
G 4 HOH B 25 653 653 HOH HOH . 
G 4 HOH B 26 660 660 HOH HOH . 
G 4 HOH B 27 662 662 HOH HOH . 
G 4 HOH B 28 664 664 HOH HOH . 
G 4 HOH B 29 669 669 HOH HOH . 
G 4 HOH B 30 671 671 HOH HOH . 
G 4 HOH B 31 680 680 HOH HOH . 
G 4 HOH B 32 722 722 HOH HOH . 
G 4 HOH B 33 727 727 HOH HOH . 
G 4 HOH B 34 728 728 HOH HOH . 
G 4 HOH B 35 737 737 HOH HOH . 
G 4 HOH B 36 803 803 HOH HOH . 
G 4 HOH B 37 852 852 HOH HOH . 
G 4 HOH B 38 856 856 HOH HOH . 
G 4 HOH B 39 867 867 HOH HOH . 
G 4 HOH B 40 966 966 HOH HOH . 
G 4 HOH B 41 967 967 HOH HOH . 
G 4 HOH B 42 972 972 HOH HOH . 
G 4 HOH B 43 988 988 HOH HOH . 
G 4 HOH B 44 1026 1026 HOH HOH . 
G 4 HOH B 45 1077 1077 HOH HOH . 
G 4 HOH B 46 1129 1129 HOH HOH . 
G 4 HOH B 47 1139 1139 HOH HOH . 
G 4 HOH B 48 1141 1141 HOH HOH . 
G 4 HOH B 49 1164 1164 HOH HOH . 
G 4 HOH B 50 1212 1212 HOH HOH . 
G 4 HOH B 51 1248 1248 HOH HOH . 
H 4 HOH D 1 528 528 HOH HOH . 
H 4 HOH D 2 532 532 HOH HOH . 
H 4 HOH D 3 570 570 HOH HOH . 
H 4 HOH D 4 573 573 HOH HOH . 
H 4 HOH D 5 575 575 HOH HOH . 
H 4 HOH D 6 581 581 HOH HOH . 
H 4 HOH D 7 588 588 HOH HOH . 
H 4 HOH D 8 600 600 HOH HOH . 
H 4 HOH D 9 602 602 HOH HOH . 
H 4 HOH D 10 607 607 HOH HOH . 
H 4 HOH D 11 612 612 HOH HOH . 
H 4 HOH D 12 622 622 HOH HOH . 
H 4 HOH D 13 624 624 HOH HOH . 
H 4 HOH D 14 625 625 HOH HOH . 
H 4 HOH D 15 626 626 HOH HOH . 
H 4 HOH D 16 633 633 HOH HOH . 
H 4 HOH D 17 635 635 HOH HOH . 
H 4 HOH D 18 636 636 HOH HOH . 
H 4 HOH D 19 641 641 HOH HOH . 
H 4 HOH D 20 655 655 HOH HOH . 
H 4 HOH D 21 656 656 HOH HOH . 
H 4 HOH D 22 663 663 HOH HOH . 
H 4 HOH D 23 666 666 HOH HOH . 
H 4 HOH D 24 668 668 HOH HOH . 
H 4 HOH D 25 670 670 HOH HOH . 
H 4 HOH D 26 677 677 HOH HOH . 
H 4 HOH D 27 679 679 HOH HOH . 
H 4 HOH D 28 688 688 HOH HOH . 
H 4 HOH D 29 696 696 HOH HOH . 
H 4 HOH D 30 697 697 HOH HOH . 
H 4 HOH D 31 698 698 HOH HOH . 
H 4 HOH D 32 701 701 HOH HOH . 
H 4 HOH D 33 733 733 HOH HOH . 
H 4 HOH D 34 734 734 HOH HOH . 
H 4 HOH D 35 741 741 HOH HOH . 
H 4 HOH D 36 742 742 HOH HOH . 
H 4 HOH D 37 761 761 HOH HOH . 
H 4 HOH D 38 764 764 HOH HOH . 
H 4 HOH D 39 802 802 HOH HOH . 
H 4 HOH D 40 809 809 HOH HOH . 
H 4 HOH D 41 830 830 HOH HOH . 
H 4 HOH D 42 842 842 HOH HOH . 
H 4 HOH D 43 849 849 HOH HOH . 
H 4 HOH D 44 914 914 HOH HOH . 
H 4 HOH D 45 921 921 HOH HOH . 
H 4 HOH D 46 926 926 HOH HOH . 
H 4 HOH D 47 933 933 HOH HOH . 
H 4 HOH D 48 951 951 HOH HOH . 
H 4 HOH D 49 961 961 HOH HOH . 
H 4 HOH D 50 968 968 HOH HOH . 
H 4 HOH D 51 983 983 HOH HOH . 
H 4 HOH D 52 992 992 HOH HOH . 
H 4 HOH D 53 1002 1002 HOH HOH . 
H 4 HOH D 54 1008 1008 HOH HOH . 
H 4 HOH D 55 1025 1025 HOH HOH . 
H 4 HOH D 56 1052 1052 HOH HOH . 
H 4 HOH D 57 1068 1068 HOH HOH . 
H 4 HOH D 58 1084 1084 HOH HOH . 
H 4 HOH D 59 1100 1100 HOH HOH . 
H 4 HOH D 60 1108 1108 HOH HOH . 
H 4 HOH D 61 1123 1123 HOH HOH . 
H 4 HOH D 62 1146 1146 HOH HOH . 
H 4 HOH D 63 1151 1151 HOH HOH . 
H 4 HOH D 64 1156 1156 HOH HOH . 
H 4 HOH D 65 1157 1157 HOH HOH . 
H 4 HOH D 66 1163 1163 HOH HOH . 
H 4 HOH D 67 1167 1167 HOH HOH . 
H 4 HOH D 68 1180 1180 HOH HOH . 
H 4 HOH D 69 1182 1182 HOH HOH . 
H 4 HOH D 70 1183 1183 HOH HOH . 
H 4 HOH D 71 1195 1195 HOH HOH . 
H 4 HOH D 72 1205 1205 HOH HOH . 
H 4 HOH D 73 1207 1207 HOH HOH . 
H 4 HOH D 74 1211 1211 HOH HOH . 
H 4 HOH D 75 1230 1230 HOH HOH . 
H 4 HOH D 76 1235 1235 HOH HOH . 
I 4 HOH M 1 517 517 HOH HOH . 
I 4 HOH M 2 518 518 HOH HOH . 
I 4 HOH M 3 594 594 HOH HOH . 
I 4 HOH M 4 1022 1022 HOH HOH . 
I 4 HOH M 5 1028 1028 HOH HOH . 
I 4 HOH M 6 1140 1140 HOH HOH . 
J 4 HOH P 1 527 527 HOH HOH . 
J 4 HOH P 2 598 598 HOH HOH . 
J 4 HOH P 3 599 599 HOH HOH . 
J 4 HOH P 4 957 957 HOH HOH . 
J 4 HOH P 5 1152 1152 HOH HOH . 
J 4 HOH P 6 1193 1193 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 LEA . . . E 3 32.898 15.178 -14.045 1 56.27 ? C2 LEA 2 M 1 
HETATM 2 C C3 LEA . . . E 3 33.586 14.884 -15.407 1 61.96 ? C3 LEA 2 M 1 
HETATM 3 C C4 LEA . . . E 3 35.13 14.785 -15.255 1 67.97 ? C4 LEA 2 M 1 
HETATM 4 C C5 LEA . . . E 3 35.749 13.736 -16.265 1 73.86 ? C5 LEA 2 M 1 
HETATM 5 C C6 LEA . . . E 3 36.437 14.424 -17.478 1 78.06 ? C6 LEA 2 M 1 
HETATM 6 O O1 LEA . . . E 3 32.54 16.313 -13.752 1 51.94 ? O1 LEA 2 M 1 
HETATM 7 H H31 LEA . . . E 3 33.176 13.963 -15.797 1 61.7 ? H31 LEA 2 M 1 
HETATM 8 H H32 LEA . . . E 3 33.335 15.675 -16.1 1 61.32 ? H32 LEA 2 M 1 
HETATM 9 H H41 LEA . . . E 3 35.53 15.761 -15.486 1 68.46 ? H41 LEA 2 M 1 
HETATM 10 H H42 LEA . . . E 3 35.406 14.564 -14.239 1 67.86 ? H42 LEA 2 M 1 
HETATM 11 H H51 LEA . . . E 3 36.474 13.129 -15.742 1 73.66 ? H51 LEA 2 M 1 
HETATM 12 H H52 LEA . . . E 3 34.976 13.078 -16.639 1 73.49 ? H52 LEA 2 M 1 
HETATM 13 H H61 LEA . . . E 3 35.695 14.991 -18.022 1 78.6 ? H61 LEA 2 M 1 
HETATM 14 H H63 LEA . . . E 3 36.785 13.64 -18.136 1 78.75 ? H63 LEA 2 M 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#