data_1VWK
#
_model_server_result.job_id            gXi7vJ9YdXEF_mHoVQn3Zg 
_model_server_result.datetime_utc      '2024-11-27 20:54:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vwk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2}' 
#
_entry.id    1VWK 
#
_exptl.entry_id    1VWK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.132 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTANOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VWK 
_cell.length_a            95.01 
_cell.length_b            105.42 
_cell.length_c            47.97 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VWK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG CYS 7 M CYS 1 1_555 E C6 LEA . M LEA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? 
covale ? covale2 E C2 LEA . M LEA 2 1_555 C N HIS 1 M HIS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 C C LYS 8 M LYS 9 1_555 C N NH2 9 M NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? 
covale ? covale4 D SG CYS 7 P CYS 1 1_555 F C6 LEA . P LEA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? 
covale ? covale5 F C2 LEA . P LEA 2 1_555 D N HIS 1 P HIS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? 
covale ? covale6 D C LYS 8 P LYS 9 1_555 D N NH2 9 P NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.29 ? 
#
_chem_comp.formula           'C5 H10 O2' 
_chem_comp.formula_weight    102.132 
_chem_comp.id                LEA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VALERIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O2 LEA sing 173 n n 
C2 C3 LEA sing 174 n n 
C2 O1 LEA doub 175 n n 
O2 HO2 LEA sing 176 n n 
C3 C4 LEA sing 177 n n 
C3 H31 LEA sing 178 n n 
C3 H32 LEA sing 179 n n 
C4 C5 LEA sing 180 n n 
C4 H41 LEA sing 181 n n 
C4 H42 LEA sing 182 n n 
C5 C6 LEA sing 183 n n 
C5 H51 LEA sing 184 n n 
C5 H52 LEA sing 185 n n 
C6 H61 LEA sing 186 n n 
C6 H62 LEA sing 187 n n 
C6 H63 LEA sing 188 n n 
#
_atom_sites.entry_id                     1VWK 
_atom_sites.fract_transf_matrix[1][1]    0.010525 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009486 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 LEA M 1 2 2 LEA PNO . 
F 3 LEA P 1 2 2 LEA PNO . 
G 4 HOH B 1 509 509 HOH HOH . 
G 4 HOH B 2 512 512 HOH HOH . 
G 4 HOH B 3 513 513 HOH HOH . 
G 4 HOH B 4 514 514 HOH HOH . 
G 4 HOH B 5 515 515 HOH HOH . 
G 4 HOH B 6 516 516 HOH HOH . 
G 4 HOH B 7 517 517 HOH HOH . 
G 4 HOH B 8 519 519 HOH HOH . 
G 4 HOH B 9 520 520 HOH HOH . 
G 4 HOH B 10 521 521 HOH HOH . 
G 4 HOH B 11 523 523 HOH HOH . 
G 4 HOH B 12 529 529 HOH HOH . 
G 4 HOH B 13 542 542 HOH HOH . 
G 4 HOH B 14 563 563 HOH HOH . 
G 4 HOH B 15 576 576 HOH HOH . 
G 4 HOH B 16 605 605 HOH HOH . 
G 4 HOH B 17 606 606 HOH HOH . 
G 4 HOH B 18 607 607 HOH HOH . 
G 4 HOH B 19 609 609 HOH HOH . 
G 4 HOH B 20 610 610 HOH HOH . 
G 4 HOH B 21 613 613 HOH HOH . 
G 4 HOH B 22 616 616 HOH HOH . 
G 4 HOH B 23 617 617 HOH HOH . 
G 4 HOH B 24 618 618 HOH HOH . 
G 4 HOH B 25 619 619 HOH HOH . 
G 4 HOH B 26 620 620 HOH HOH . 
G 4 HOH B 27 621 621 HOH HOH . 
G 4 HOH B 28 625 625 HOH HOH . 
G 4 HOH B 29 628 628 HOH HOH . 
G 4 HOH B 30 629 629 HOH HOH . 
G 4 HOH B 31 637 637 HOH HOH . 
G 4 HOH B 32 639 639 HOH HOH . 
G 4 HOH B 33 643 643 HOH HOH . 
G 4 HOH B 34 646 646 HOH HOH . 
G 4 HOH B 35 652 652 HOH HOH . 
G 4 HOH B 36 653 653 HOH HOH . 
G 4 HOH B 37 660 660 HOH HOH . 
G 4 HOH B 38 662 662 HOH HOH . 
G 4 HOH B 39 664 664 HOH HOH . 
G 4 HOH B 40 669 669 HOH HOH . 
G 4 HOH B 41 680 680 HOH HOH . 
G 4 HOH B 42 727 727 HOH HOH . 
G 4 HOH B 43 728 728 HOH HOH . 
G 4 HOH B 44 737 737 HOH HOH . 
G 4 HOH B 45 803 803 HOH HOH . 
G 4 HOH B 46 852 852 HOH HOH . 
G 4 HOH B 47 856 856 HOH HOH . 
G 4 HOH B 48 867 867 HOH HOH . 
G 4 HOH B 49 966 966 HOH HOH . 
G 4 HOH B 50 967 967 HOH HOH . 
G 4 HOH B 51 972 972 HOH HOH . 
G 4 HOH B 52 988 988 HOH HOH . 
G 4 HOH B 53 1026 1026 HOH HOH . 
G 4 HOH B 54 1077 1077 HOH HOH . 
G 4 HOH B 55 1129 1129 HOH HOH . 
G 4 HOH B 56 1139 1139 HOH HOH . 
G 4 HOH B 57 1141 1141 HOH HOH . 
G 4 HOH B 58 1164 1164 HOH HOH . 
G 4 HOH B 59 1190 1190 HOH HOH . 
G 4 HOH B 60 1211 1211 HOH HOH . 
G 4 HOH B 61 1212 1212 HOH HOH . 
G 4 HOH B 62 1249 1249 HOH HOH . 
G 4 HOH B 63 1251 1251 HOH HOH . 
G 4 HOH B 64 1258 1258 HOH HOH . 
G 4 HOH B 65 1264 1264 HOH HOH . 
G 4 HOH B 66 1271 1271 HOH HOH . 
G 4 HOH B 67 1272 1272 HOH HOH . 
G 4 HOH B 68 1285 1285 HOH HOH . 
G 4 HOH B 69 1287 1287 HOH HOH . 
G 4 HOH B 70 1289 1289 HOH HOH . 
G 4 HOH B 71 1299 1299 HOH HOH . 
G 4 HOH B 72 1310 1310 HOH HOH . 
G 4 HOH B 73 1322 1322 HOH HOH . 
G 4 HOH B 74 1328 1328 HOH HOH . 
G 4 HOH B 75 1332 1332 HOH HOH . 
G 4 HOH B 76 1348 1348 HOH HOH . 
G 4 HOH B 77 1354 1354 HOH HOH . 
H 4 HOH D 1 507 507 HOH HOH . 
H 4 HOH D 2 508 508 HOH HOH . 
H 4 HOH D 3 511 511 HOH HOH . 
H 4 HOH D 4 570 570 HOH HOH . 
H 4 HOH D 5 581 581 HOH HOH . 
H 4 HOH D 6 599 599 HOH HOH . 
H 4 HOH D 7 600 600 HOH HOH . 
H 4 HOH D 8 602 602 HOH HOH . 
H 4 HOH D 9 612 612 HOH HOH . 
H 4 HOH D 10 622 622 HOH HOH . 
H 4 HOH D 11 624 624 HOH HOH . 
H 4 HOH D 12 626 626 HOH HOH . 
H 4 HOH D 13 633 633 HOH HOH . 
H 4 HOH D 14 635 635 HOH HOH . 
H 4 HOH D 15 636 636 HOH HOH . 
H 4 HOH D 16 641 641 HOH HOH . 
H 4 HOH D 17 655 655 HOH HOH . 
H 4 HOH D 18 656 656 HOH HOH . 
H 4 HOH D 19 663 663 HOH HOH . 
H 4 HOH D 20 666 666 HOH HOH . 
H 4 HOH D 21 668 668 HOH HOH . 
H 4 HOH D 22 670 670 HOH HOH . 
H 4 HOH D 23 671 671 HOH HOH . 
H 4 HOH D 24 677 677 HOH HOH . 
H 4 HOH D 25 679 679 HOH HOH . 
H 4 HOH D 26 688 688 HOH HOH . 
H 4 HOH D 27 697 697 HOH HOH . 
H 4 HOH D 28 698 698 HOH HOH . 
H 4 HOH D 29 701 701 HOH HOH . 
H 4 HOH D 30 733 733 HOH HOH . 
H 4 HOH D 31 734 734 HOH HOH . 
H 4 HOH D 32 741 741 HOH HOH . 
H 4 HOH D 33 742 742 HOH HOH . 
H 4 HOH D 34 761 761 HOH HOH . 
H 4 HOH D 35 764 764 HOH HOH . 
H 4 HOH D 36 802 802 HOH HOH . 
H 4 HOH D 37 809 809 HOH HOH . 
H 4 HOH D 38 830 830 HOH HOH . 
H 4 HOH D 39 842 842 HOH HOH . 
H 4 HOH D 40 849 849 HOH HOH . 
H 4 HOH D 41 914 914 HOH HOH . 
H 4 HOH D 42 926 926 HOH HOH . 
H 4 HOH D 43 933 933 HOH HOH . 
H 4 HOH D 44 951 951 HOH HOH . 
H 4 HOH D 45 961 961 HOH HOH . 
H 4 HOH D 46 968 968 HOH HOH . 
H 4 HOH D 47 992 992 HOH HOH . 
H 4 HOH D 48 1002 1002 HOH HOH . 
H 4 HOH D 49 1024 1024 HOH HOH . 
H 4 HOH D 50 1025 1025 HOH HOH . 
H 4 HOH D 51 1052 1052 HOH HOH . 
H 4 HOH D 52 1068 1068 HOH HOH . 
H 4 HOH D 53 1084 1084 HOH HOH . 
H 4 HOH D 54 1100 1100 HOH HOH . 
H 4 HOH D 55 1108 1108 HOH HOH . 
H 4 HOH D 56 1123 1123 HOH HOH . 
H 4 HOH D 57 1146 1146 HOH HOH . 
H 4 HOH D 58 1151 1151 HOH HOH . 
H 4 HOH D 59 1154 1154 HOH HOH . 
H 4 HOH D 60 1156 1156 HOH HOH . 
H 4 HOH D 61 1157 1157 HOH HOH . 
H 4 HOH D 62 1163 1163 HOH HOH . 
H 4 HOH D 63 1167 1167 HOH HOH . 
H 4 HOH D 64 1182 1182 HOH HOH . 
H 4 HOH D 65 1183 1183 HOH HOH . 
H 4 HOH D 66 1195 1195 HOH HOH . 
H 4 HOH D 67 1197 1197 HOH HOH . 
H 4 HOH D 68 1205 1205 HOH HOH . 
H 4 HOH D 69 1207 1207 HOH HOH . 
H 4 HOH D 70 1230 1230 HOH HOH . 
H 4 HOH D 71 1235 1235 HOH HOH . 
H 4 HOH D 72 1238 1238 HOH HOH . 
H 4 HOH D 73 1262 1262 HOH HOH . 
H 4 HOH D 74 1273 1273 HOH HOH . 
H 4 HOH D 75 1282 1282 HOH HOH . 
H 4 HOH D 76 1284 1284 HOH HOH . 
H 4 HOH D 77 1286 1286 HOH HOH . 
H 4 HOH D 78 1292 1292 HOH HOH . 
H 4 HOH D 79 1297 1297 HOH HOH . 
H 4 HOH D 80 1314 1314 HOH HOH . 
H 4 HOH D 81 1321 1321 HOH HOH . 
H 4 HOH D 82 1324 1324 HOH HOH . 
H 4 HOH D 83 1341 1341 HOH HOH . 
H 4 HOH D 84 1350 1350 HOH HOH . 
H 4 HOH D 85 1351 1351 HOH HOH . 
I 4 HOH M 1 594 594 HOH HOH . 
I 4 HOH M 2 1022 1022 HOH HOH . 
I 4 HOH M 3 1028 1028 HOH HOH . 
I 4 HOH M 4 1140 1140 HOH HOH . 
J 4 HOH P 1 598 598 HOH HOH . 
J 4 HOH P 2 957 957 HOH HOH . 
J 4 HOH P 3 1180 1180 HOH HOH . 
J 4 HOH P 4 1193 1193 HOH HOH . 
J 4 HOH P 5 1253 1253 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 LEA . . . F 3 18.976 0.987 20.611 1 36.86 ? C2 LEA 2 P 1 
HETATM 2 C C3 LEA . . . F 3 18.654 -0.381 21.194 1 43.06 ? C3 LEA 2 P 1 
HETATM 3 C C4 LEA . . . F 3 17.355 -0.444 21.97 1 47.56 ? C4 LEA 2 P 1 
HETATM 4 C C5 LEA . . . F 3 16.761 -1.841 21.62 1 53.38 ? C5 LEA 2 P 1 
HETATM 5 C C6 LEA . . . F 3 15.516 -2.046 22.376 1 55.66 ? C6 LEA 2 P 1 
HETATM 6 O O1 LEA . . . F 3 18.592 2.015 21.113 1 35.59 ? O1 LEA 2 P 1 
HETATM 7 H H31 LEA . . . F 3 18.668 -1.095 20.382 1 43.01 ? H31 LEA 2 P 1 
HETATM 8 H H32 LEA . . . F 3 19.454 -0.634 21.876 1 43.74 ? H32 LEA 2 P 1 
HETATM 9 H H41 LEA . . . F 3 17.55 -0.38 23.029 1 46.26 ? H41 LEA 2 P 1 
HETATM 10 H H42 LEA . . . F 3 16.687 0.354 21.675 1 47.1 ? H42 LEA 2 P 1 
HETATM 11 H H51 LEA . . . F 3 16.517 -1.867 20.564 1 52.72 ? H51 LEA 2 P 1 
HETATM 12 H H52 LEA . . . F 3 17.459 -2.635 21.846 1 52.58 ? H52 LEA 2 P 1 
HETATM 13 H H61 LEA . . . F 3 15.742 -2.278 23.406 1 56.22 ? H61 LEA 2 P 1 
HETATM 14 H H63 LEA . . . F 3 14.992 -2.883 21.936 1 56.48 ? H63 LEA 2 P 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#