data_1VWL
#
_model_server_result.job_id            IZ1pL9h78_2YcnVqhx3kgA 
_model_server_result.datetime_utc      '2024-11-28 00:21:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vwl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2}' 
#
_entry.id    1VWL 
#
_exptl.entry_id    1VWL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.132 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTANOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VWL 
_cell.length_a            94.81 
_cell.length_b            105.42 
_cell.length_c            47.91 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VWL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG CYS 7 M CYS 1 1_555 E C6 LEA . M LEA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? 
covale ? covale2 E C2 LEA . M LEA 2 1_555 C N HIS 1 M HIS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale3 C C LYS 8 M LYS 9 1_555 C N NH2 9 M NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
covale ? covale4 D SG CYS 7 P CYS 1 1_555 F C6 LEA . P LEA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? 
covale ? covale5 F C2 LEA . P LEA 2 1_555 D N HIS 1 P HIS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
covale ? covale6 D C LYS 8 P LYS 9 1_555 D N NH2 9 P NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.287 ? 
#
_chem_comp.formula           'C5 H10 O2' 
_chem_comp.formula_weight    102.132 
_chem_comp.id                LEA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VALERIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O2 LEA sing 173 n n 
C2 C3 LEA sing 174 n n 
C2 O1 LEA doub 175 n n 
O2 HO2 LEA sing 176 n n 
C3 C4 LEA sing 177 n n 
C3 H31 LEA sing 178 n n 
C3 H32 LEA sing 179 n n 
C4 C5 LEA sing 180 n n 
C4 H41 LEA sing 181 n n 
C4 H42 LEA sing 182 n n 
C5 C6 LEA sing 183 n n 
C5 H51 LEA sing 184 n n 
C5 H52 LEA sing 185 n n 
C6 H61 LEA sing 186 n n 
C6 H62 LEA sing 187 n n 
C6 H63 LEA sing 188 n n 
#
_atom_sites.entry_id                     1VWL 
_atom_sites.fract_transf_matrix[1][1]    0.010547 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009486 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 LEA M 1 2 2 LEA PNO . 
F 3 LEA P 1 2 2 LEA PNO . 
G 4 HOH B 1 503 503 HOH HOH . 
G 4 HOH B 2 504 504 HOH HOH . 
G 4 HOH B 3 505 505 HOH HOH . 
G 4 HOH B 4 506 506 HOH HOH . 
G 4 HOH B 5 512 512 HOH HOH . 
G 4 HOH B 6 513 513 HOH HOH . 
G 4 HOH B 7 514 514 HOH HOH . 
G 4 HOH B 8 515 515 HOH HOH . 
G 4 HOH B 9 516 516 HOH HOH . 
G 4 HOH B 10 519 519 HOH HOH . 
G 4 HOH B 11 520 520 HOH HOH . 
G 4 HOH B 12 521 521 HOH HOH . 
G 4 HOH B 13 542 542 HOH HOH . 
G 4 HOH B 14 576 576 HOH HOH . 
G 4 HOH B 15 605 605 HOH HOH . 
G 4 HOH B 16 606 606 HOH HOH . 
G 4 HOH B 17 607 607 HOH HOH . 
G 4 HOH B 18 609 609 HOH HOH . 
G 4 HOH B 19 610 610 HOH HOH . 
G 4 HOH B 20 613 613 HOH HOH . 
G 4 HOH B 21 616 616 HOH HOH . 
G 4 HOH B 22 617 617 HOH HOH . 
G 4 HOH B 23 618 618 HOH HOH . 
G 4 HOH B 24 619 619 HOH HOH . 
G 4 HOH B 25 620 620 HOH HOH . 
G 4 HOH B 26 621 621 HOH HOH . 
G 4 HOH B 27 625 625 HOH HOH . 
G 4 HOH B 28 628 628 HOH HOH . 
G 4 HOH B 29 629 629 HOH HOH . 
G 4 HOH B 30 637 637 HOH HOH . 
G 4 HOH B 31 639 639 HOH HOH . 
G 4 HOH B 32 643 643 HOH HOH . 
G 4 HOH B 33 646 646 HOH HOH . 
G 4 HOH B 34 652 652 HOH HOH . 
G 4 HOH B 35 653 653 HOH HOH . 
G 4 HOH B 36 660 660 HOH HOH . 
G 4 HOH B 37 662 662 HOH HOH . 
G 4 HOH B 38 664 664 HOH HOH . 
G 4 HOH B 39 669 669 HOH HOH . 
G 4 HOH B 40 680 680 HOH HOH . 
G 4 HOH B 41 722 722 HOH HOH . 
G 4 HOH B 42 727 727 HOH HOH . 
G 4 HOH B 43 728 728 HOH HOH . 
G 4 HOH B 44 737 737 HOH HOH . 
G 4 HOH B 45 803 803 HOH HOH . 
G 4 HOH B 46 852 852 HOH HOH . 
G 4 HOH B 47 856 856 HOH HOH . 
G 4 HOH B 48 867 867 HOH HOH . 
G 4 HOH B 49 966 966 HOH HOH . 
G 4 HOH B 50 967 967 HOH HOH . 
G 4 HOH B 51 988 988 HOH HOH . 
G 4 HOH B 52 1022 1022 HOH HOH . 
G 4 HOH B 53 1077 1077 HOH HOH . 
G 4 HOH B 54 1129 1129 HOH HOH . 
G 4 HOH B 55 1139 1139 HOH HOH . 
G 4 HOH B 56 1164 1164 HOH HOH . 
G 4 HOH B 57 1190 1190 HOH HOH . 
G 4 HOH B 58 1209 1209 HOH HOH . 
G 4 HOH B 59 1212 1212 HOH HOH . 
G 4 HOH B 60 1249 1249 HOH HOH . 
G 4 HOH B 61 1251 1251 HOH HOH . 
G 4 HOH B 62 1258 1258 HOH HOH . 
G 4 HOH B 63 1264 1264 HOH HOH . 
G 4 HOH B 64 1271 1271 HOH HOH . 
G 4 HOH B 65 1272 1272 HOH HOH . 
G 4 HOH B 66 1285 1285 HOH HOH . 
G 4 HOH B 67 1289 1289 HOH HOH . 
G 4 HOH B 68 1299 1299 HOH HOH . 
G 4 HOH B 69 1310 1310 HOH HOH . 
G 4 HOH B 70 1348 1348 HOH HOH . 
G 4 HOH B 71 1354 1354 HOH HOH . 
G 4 HOH B 72 1363 1363 HOH HOH . 
G 4 HOH B 73 1365 1365 HOH HOH . 
G 4 HOH B 74 1373 1373 HOH HOH . 
G 4 HOH B 75 1377 1377 HOH HOH . 
G 4 HOH B 76 1384 1384 HOH HOH . 
G 4 HOH B 77 1390 1390 HOH HOH . 
G 4 HOH B 78 1402 1402 HOH HOH . 
G 4 HOH B 79 1403 1403 HOH HOH . 
G 4 HOH B 80 1418 1418 HOH HOH . 
G 4 HOH B 81 1448 1448 HOH HOH . 
H 4 HOH D 1 507 507 HOH HOH . 
H 4 HOH D 2 508 508 HOH HOH . 
H 4 HOH D 3 510 510 HOH HOH . 
H 4 HOH D 4 511 511 HOH HOH . 
H 4 HOH D 5 529 529 HOH HOH . 
H 4 HOH D 6 570 570 HOH HOH . 
H 4 HOH D 7 581 581 HOH HOH . 
H 4 HOH D 8 599 599 HOH HOH . 
H 4 HOH D 9 600 600 HOH HOH . 
H 4 HOH D 10 602 602 HOH HOH . 
H 4 HOH D 11 612 612 HOH HOH . 
H 4 HOH D 12 622 622 HOH HOH . 
H 4 HOH D 13 624 624 HOH HOH . 
H 4 HOH D 14 626 626 HOH HOH . 
H 4 HOH D 15 633 633 HOH HOH . 
H 4 HOH D 16 635 635 HOH HOH . 
H 4 HOH D 17 636 636 HOH HOH . 
H 4 HOH D 18 641 641 HOH HOH . 
H 4 HOH D 19 655 655 HOH HOH . 
H 4 HOH D 20 656 656 HOH HOH . 
H 4 HOH D 21 663 663 HOH HOH . 
H 4 HOH D 22 666 666 HOH HOH . 
H 4 HOH D 23 668 668 HOH HOH . 
H 4 HOH D 24 670 670 HOH HOH . 
H 4 HOH D 25 671 671 HOH HOH . 
H 4 HOH D 26 688 688 HOH HOH . 
H 4 HOH D 27 697 697 HOH HOH . 
H 4 HOH D 28 698 698 HOH HOH . 
H 4 HOH D 29 701 701 HOH HOH . 
H 4 HOH D 30 733 733 HOH HOH . 
H 4 HOH D 31 734 734 HOH HOH . 
H 4 HOH D 32 741 741 HOH HOH . 
H 4 HOH D 33 742 742 HOH HOH . 
H 4 HOH D 34 761 761 HOH HOH . 
H 4 HOH D 35 802 802 HOH HOH . 
H 4 HOH D 36 830 830 HOH HOH . 
H 4 HOH D 37 842 842 HOH HOH . 
H 4 HOH D 38 849 849 HOH HOH . 
H 4 HOH D 39 914 914 HOH HOH . 
H 4 HOH D 40 926 926 HOH HOH . 
H 4 HOH D 41 933 933 HOH HOH . 
H 4 HOH D 42 951 951 HOH HOH . 
H 4 HOH D 43 961 961 HOH HOH . 
H 4 HOH D 44 968 968 HOH HOH . 
H 4 HOH D 45 972 972 HOH HOH . 
H 4 HOH D 46 983 983 HOH HOH . 
H 4 HOH D 47 992 992 HOH HOH . 
H 4 HOH D 48 1002 1002 HOH HOH . 
H 4 HOH D 49 1024 1024 HOH HOH . 
H 4 HOH D 50 1025 1025 HOH HOH . 
H 4 HOH D 51 1052 1052 HOH HOH . 
H 4 HOH D 52 1068 1068 HOH HOH . 
H 4 HOH D 53 1100 1100 HOH HOH . 
H 4 HOH D 54 1108 1108 HOH HOH . 
H 4 HOH D 55 1123 1123 HOH HOH . 
H 4 HOH D 56 1146 1146 HOH HOH . 
H 4 HOH D 57 1151 1151 HOH HOH . 
H 4 HOH D 58 1154 1154 HOH HOH . 
H 4 HOH D 59 1157 1157 HOH HOH . 
H 4 HOH D 60 1163 1163 HOH HOH . 
H 4 HOH D 61 1167 1167 HOH HOH . 
H 4 HOH D 62 1182 1182 HOH HOH . 
H 4 HOH D 63 1183 1183 HOH HOH . 
H 4 HOH D 64 1195 1195 HOH HOH . 
H 4 HOH D 65 1205 1205 HOH HOH . 
H 4 HOH D 66 1207 1207 HOH HOH . 
H 4 HOH D 67 1211 1211 HOH HOH . 
H 4 HOH D 68 1230 1230 HOH HOH . 
H 4 HOH D 69 1235 1235 HOH HOH . 
H 4 HOH D 70 1238 1238 HOH HOH . 
H 4 HOH D 71 1262 1262 HOH HOH . 
H 4 HOH D 72 1273 1273 HOH HOH . 
H 4 HOH D 73 1284 1284 HOH HOH . 
H 4 HOH D 74 1286 1286 HOH HOH . 
H 4 HOH D 75 1292 1292 HOH HOH . 
H 4 HOH D 76 1297 1297 HOH HOH . 
H 4 HOH D 77 1314 1314 HOH HOH . 
H 4 HOH D 78 1321 1321 HOH HOH . 
H 4 HOH D 79 1324 1324 HOH HOH . 
H 4 HOH D 80 1350 1350 HOH HOH . 
H 4 HOH D 81 1351 1351 HOH HOH . 
H 4 HOH D 82 1358 1358 HOH HOH . 
H 4 HOH D 83 1360 1360 HOH HOH . 
H 4 HOH D 84 1371 1371 HOH HOH . 
H 4 HOH D 85 1375 1375 HOH HOH . 
H 4 HOH D 86 1381 1381 HOH HOH . 
H 4 HOH D 87 1399 1399 HOH HOH . 
H 4 HOH D 88 1404 1404 HOH HOH . 
H 4 HOH D 89 1405 1405 HOH HOH . 
H 4 HOH D 90 1408 1408 HOH HOH . 
H 4 HOH D 91 1411 1411 HOH HOH . 
H 4 HOH D 92 1412 1412 HOH HOH . 
H 4 HOH D 93 1414 1414 HOH HOH . 
H 4 HOH D 94 1421 1421 HOH HOH . 
H 4 HOH D 95 1425 1425 HOH HOH . 
H 4 HOH D 96 1430 1430 HOH HOH . 
I 4 HOH M 1 517 517 HOH HOH . 
I 4 HOH M 2 594 594 HOH HOH . 
I 4 HOH M 3 1028 1028 HOH HOH . 
I 4 HOH M 4 1140 1140 HOH HOH . 
J 4 HOH P 1 598 598 HOH HOH . 
J 4 HOH P 2 1180 1180 HOH HOH . 
J 4 HOH P 3 1193 1193 HOH HOH . 
J 4 HOH P 4 1253 1253 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 LEA . . . F 3 18.948 0.996 20.629 1 42.71 ? C2 LEA 2 P 1 
HETATM 2 C C3 LEA . . . F 3 18.621 -0.371 21.224 1 47.34 ? C3 LEA 2 P 1 
HETATM 3 C C4 LEA . . . F 3 17.336 -0.426 21.996 1 51.43 ? C4 LEA 2 P 1 
HETATM 4 C C5 LEA . . . F 3 16.756 -1.833 21.678 1 55.92 ? C5 LEA 2 P 1 
HETATM 5 C C6 LEA . . . F 3 15.44 -1.976 22.39 1 59.89 ? C6 LEA 2 P 1 
HETATM 6 O O1 LEA . . . F 3 18.605 2.055 21.132 1 40.1 ? O1 LEA 2 P 1 
HETATM 7 H H31 LEA . . . F 3 18.656 -1.105 20.431 1 47.46 ? H31 LEA 2 P 1 
HETATM 8 H H32 LEA . . . F 3 19.417 -0.605 21.919 1 47.88 ? H32 LEA 2 P 1 
HETATM 9 H H41 LEA . . . F 3 17.538 -0.337 23.05 1 51.43 ? H41 LEA 2 P 1 
HETATM 10 H H42 LEA . . . F 3 16.667 0.365 21.687 1 51.85 ? H42 LEA 2 P 1 
HETATM 11 H H51 LEA . . . F 3 16.591 -1.934 20.613 1 54.82 ? H51 LEA 2 P 1 
HETATM 12 H H52 LEA . . . F 3 17.437 -2.609 21.999 1 54.71 ? H52 LEA 2 P 1 
HETATM 13 H H61 LEA . . . F 3 15.631 -2.165 23.438 1 61.6 ? H61 LEA 2 P 1 
HETATM 14 H H63 LEA . . . F 3 14.951 -2.849 21.979 1 60.36 ? H63 LEA 2 P 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#