data_1VWQ
#
_model_server_result.job_id            SjCD4N97d_eQy5Bhtuo1Tw 
_model_server_result.datetime_utc      '2024-11-24 06:25:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vwq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2}' 
#
_entry.id    1VWQ 
#
_exptl.entry_id    1VWQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.132 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VWQ 
_cell.length_a            58.1 
_cell.length_b            58.1 
_cell.length_c            174.49 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VWQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 7 P CYS 1 1_555 C C6 LEA . P LEA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? 
covale ? covale2 C C2 LEA . P LEA 2 1_555 B N HIS 1 P HIS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? 
covale ? covale3 B C LYS 8 P LYS 9 1_555 B N NH2 9 P NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.292 ? 
#
_chem_comp.formula           'C5 H10 O2' 
_chem_comp.formula_weight    102.132 
_chem_comp.id                LEA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VALERIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O2 LEA sing 173 n n 
C2 C3 LEA sing 174 n n 
C2 O1 LEA doub 175 n n 
O2 HO2 LEA sing 176 n n 
C3 C4 LEA sing 177 n n 
C3 H31 LEA sing 178 n n 
C3 H32 LEA sing 179 n n 
C4 C5 LEA sing 180 n n 
C4 H41 LEA sing 181 n n 
C4 H42 LEA sing 182 n n 
C5 C6 LEA sing 183 n n 
C5 H51 LEA sing 184 n n 
C5 H52 LEA sing 185 n n 
C6 H61 LEA sing 186 n n 
C6 H62 LEA sing 187 n n 
C6 H63 LEA sing 188 n n 
#
_atom_sites.entry_id                     1VWQ 
_atom_sites.fract_transf_matrix[1][1]    0.017212 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017212 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 LEA P 1 2 2 LEA PNO . 
D 4 HOH B 1 148 148 HOH HOH . 
D 4 HOH B 2 149 149 HOH HOH . 
D 4 HOH B 3 150 150 HOH HOH . 
D 4 HOH B 4 153 153 HOH HOH . 
D 4 HOH B 5 154 154 HOH HOH . 
D 4 HOH B 6 157 157 HOH HOH . 
D 4 HOH B 7 158 158 HOH HOH . 
D 4 HOH B 8 160 160 HOH HOH . 
D 4 HOH B 9 161 161 HOH HOH . 
D 4 HOH B 10 163 163 HOH HOH . 
D 4 HOH B 11 164 164 HOH HOH . 
D 4 HOH B 12 166 166 HOH HOH . 
D 4 HOH B 13 167 167 HOH HOH . 
D 4 HOH B 14 168 168 HOH HOH . 
D 4 HOH B 15 169 169 HOH HOH . 
D 4 HOH B 16 172 172 HOH HOH . 
D 4 HOH B 17 173 173 HOH HOH . 
D 4 HOH B 18 188 188 HOH HOH . 
D 4 HOH B 19 192 192 HOH HOH . 
D 4 HOH B 20 193 193 HOH HOH . 
D 4 HOH B 21 205 205 HOH HOH . 
D 4 HOH B 22 212 212 HOH HOH . 
D 4 HOH B 23 224 224 HOH HOH . 
D 4 HOH B 24 228 228 HOH HOH . 
D 4 HOH B 25 231 231 HOH HOH . 
D 4 HOH B 26 233 233 HOH HOH . 
D 4 HOH B 27 234 234 HOH HOH . 
D 4 HOH B 28 237 237 HOH HOH . 
D 4 HOH B 29 244 244 HOH HOH . 
D 4 HOH B 30 246 246 HOH HOH . 
D 4 HOH B 31 251 251 HOH HOH . 
D 4 HOH B 32 253 253 HOH HOH . 
D 4 HOH B 33 263 263 HOH HOH . 
D 4 HOH B 34 274 274 HOH HOH . 
D 4 HOH B 35 278 278 HOH HOH . 
D 4 HOH B 36 279 279 HOH HOH . 
D 4 HOH B 37 293 293 HOH HOH . 
D 4 HOH B 38 305 305 HOH HOH . 
D 4 HOH B 39 313 313 HOH HOH . 
D 4 HOH B 40 338 338 HOH HOH . 
D 4 HOH B 41 341 341 HOH HOH . 
D 4 HOH B 42 354 354 HOH HOH . 
D 4 HOH B 43 358 358 HOH HOH . 
D 4 HOH B 44 359 359 HOH HOH . 
D 4 HOH B 45 371 371 HOH HOH . 
D 4 HOH B 46 380 380 HOH HOH . 
D 4 HOH B 47 384 384 HOH HOH . 
D 4 HOH B 48 400 400 HOH HOH . 
D 4 HOH B 49 484 484 HOH HOH . 
D 4 HOH B 50 508 508 HOH HOH . 
D 4 HOH B 51 515 515 HOH HOH . 
D 4 HOH B 52 516 516 HOH HOH . 
D 4 HOH B 53 518 518 HOH HOH . 
D 4 HOH B 54 520 520 HOH HOH . 
D 4 HOH B 55 526 526 HOH HOH . 
D 4 HOH B 56 527 527 HOH HOH . 
D 4 HOH B 57 532 532 HOH HOH . 
D 4 HOH B 58 536 536 HOH HOH . 
D 4 HOH B 59 537 537 HOH HOH . 
D 4 HOH B 60 544 544 HOH HOH . 
D 4 HOH B 61 545 545 HOH HOH . 
D 4 HOH B 62 550 550 HOH HOH . 
D 4 HOH B 63 551 551 HOH HOH . 
E 4 HOH P 1 534 534 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 LEA . . . C 3 11.245 0.937 -18.49 1 60.22 ? C2 LEA 2 P 1 
HETATM 2 C C3 LEA . . . C 3 10.808 -0.161 -19.442 1 71.33 ? C3 LEA 2 P 1 
HETATM 3 C C4 LEA . . . C 3 11.972 -0.883 -20.094 1 79.15 ? C4 LEA 2 P 1 
HETATM 4 C C5 LEA . . . C 3 11.469 -2.327 -20.335 1 85.95 ? C5 LEA 2 P 1 
HETATM 5 C C6 LEA . . . C 3 12.573 -3.144 -20.965 1 89.28 ? C6 LEA 2 P 1 
HETATM 6 O O1 LEA . . . C 3 12.24 1.621 -18.638 1 54.34 ? O1 LEA 2 P 1 
HETATM 7 H H31 LEA . . . C 3 10.181 -0.852 -18.892 1 71.02 ? H31 LEA 2 P 1 
HETATM 8 H H32 LEA . . . C 3 10.202 0.297 -20.211 1 71.28 ? H32 LEA 2 P 1 
HETATM 9 H H41 LEA . . . C 3 12.198 -0.418 -21.043 1 79.17 ? H41 LEA 2 P 1 
HETATM 10 H H42 LEA . . . C 3 12.849 -0.87 -19.463 1 79.19 ? H42 LEA 2 P 1 
HETATM 11 H H51 LEA . . . C 3 11.215 -2.775 -19.381 1 87.16 ? H51 LEA 2 P 1 
HETATM 12 H H52 LEA . . . C 3 10.588 -2.339 -20.961 1 87.14 ? H52 LEA 2 P 1 
HETATM 13 H H61 LEA . . . C 3 12.79 -2.764 -21.951 1 89.97 ? H61 LEA 2 P 1 
HETATM 14 H H63 LEA . . . C 3 12.149 -4.132 -21.087 1 90.15 ? H63 LEA 2 P 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           14 
#