data_1VWR
#
_model_server_result.job_id            rJBDWuBx6yZC-l3DAnsiCA 
_model_server_result.datetime_utc      '2024-11-26 16:16:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vwr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2}' 
#
_entry.id    1VWR 
#
_exptl.entry_id    1VWR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.132 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VWR 
_cell.length_a            57.99 
_cell.length_b            57.99 
_cell.length_c            175.65 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VWR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B SG CYS 7 P CYS 1 1_555 C C6 LEA . P LEA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? 
covale ? covale2 C C2 LEA . P LEA 2 1_555 B N HIS 1 P HIS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? 
covale ? covale3 B C LYS 8 P LYS 9 1_555 B N NH2 9 P NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.288 ? 
#
_chem_comp.formula           'C5 H10 O2' 
_chem_comp.formula_weight    102.132 
_chem_comp.id                LEA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VALERIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O2 LEA sing 173 n n 
C2 C3 LEA sing 174 n n 
C2 O1 LEA doub 175 n n 
O2 HO2 LEA sing 176 n n 
C3 C4 LEA sing 177 n n 
C3 H31 LEA sing 178 n n 
C3 H32 LEA sing 179 n n 
C4 C5 LEA sing 180 n n 
C4 H41 LEA sing 181 n n 
C4 H42 LEA sing 182 n n 
C5 C6 LEA sing 183 n n 
C5 H51 LEA sing 184 n n 
C5 H52 LEA sing 185 n n 
C6 H61 LEA sing 186 n n 
C6 H62 LEA sing 187 n n 
C6 H63 LEA sing 188 n n 
#
_atom_sites.entry_id                     1VWR 
_atom_sites.fract_transf_matrix[1][1]    0.017244 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017244 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 LEA P 1 2 2 LEA PNO . 
D 4 HOH B 1 136 134 HOH HOH . 
D 4 HOH B 2 137 135 HOH HOH . 
D 4 HOH B 3 138 138 HOH HOH . 
D 4 HOH B 4 139 139 HOH HOH . 
D 4 HOH B 5 140 145 HOH HOH . 
D 4 HOH B 6 141 147 HOH HOH . 
D 4 HOH B 7 142 148 HOH HOH . 
D 4 HOH B 8 143 149 HOH HOH . 
D 4 HOH B 9 144 150 HOH HOH . 
D 4 HOH B 10 145 151 HOH HOH . 
D 4 HOH B 11 146 159 HOH HOH . 
D 4 HOH B 12 147 160 HOH HOH . 
D 4 HOH B 13 148 161 HOH HOH . 
D 4 HOH B 14 149 163 HOH HOH . 
D 4 HOH B 15 150 164 HOH HOH . 
D 4 HOH B 16 151 166 HOH HOH . 
D 4 HOH B 17 152 169 HOH HOH . 
D 4 HOH B 18 153 170 HOH HOH . 
D 4 HOH B 19 154 171 HOH HOH . 
D 4 HOH B 20 155 173 HOH HOH . 
D 4 HOH B 21 156 188 HOH HOH . 
D 4 HOH B 22 157 192 HOH HOH . 
D 4 HOH B 23 158 193 HOH HOH . 
D 4 HOH B 24 159 205 HOH HOH . 
D 4 HOH B 25 160 212 HOH HOH . 
D 4 HOH B 26 161 224 HOH HOH . 
D 4 HOH B 27 162 228 HOH HOH . 
D 4 HOH B 28 163 231 HOH HOH . 
D 4 HOH B 29 164 233 HOH HOH . 
D 4 HOH B 30 165 234 HOH HOH . 
D 4 HOH B 31 166 244 HOH HOH . 
D 4 HOH B 32 167 251 HOH HOH . 
D 4 HOH B 33 168 253 HOH HOH . 
D 4 HOH B 34 169 263 HOH HOH . 
D 4 HOH B 35 170 274 HOH HOH . 
D 4 HOH B 36 171 278 HOH HOH . 
D 4 HOH B 37 172 279 HOH HOH . 
D 4 HOH B 38 173 293 HOH HOH . 
D 4 HOH B 39 174 305 HOH HOH . 
D 4 HOH B 40 175 313 HOH HOH . 
D 4 HOH B 41 176 341 HOH HOH . 
D 4 HOH B 42 177 354 HOH HOH . 
D 4 HOH B 43 178 359 HOH HOH . 
D 4 HOH B 44 179 371 HOH HOH . 
D 4 HOH B 45 180 380 HOH HOH . 
D 4 HOH B 46 181 384 HOH HOH . 
D 4 HOH B 47 182 400 HOH HOH . 
D 4 HOH B 48 183 484 HOH HOH . 
D 4 HOH B 49 184 508 HOH HOH . 
D 4 HOH B 50 185 515 HOH HOH . 
D 4 HOH B 51 186 518 HOH HOH . 
D 4 HOH B 52 187 536 HOH HOH . 
D 4 HOH B 53 188 537 HOH HOH . 
D 4 HOH B 54 189 544 HOH HOH . 
D 4 HOH B 55 190 550 HOH HOH . 
D 4 HOH B 56 191 551 HOH HOH . 
D 4 HOH B 57 192 562 HOH HOH . 
D 4 HOH B 58 193 567 HOH HOH . 
D 4 HOH B 59 194 578 HOH HOH . 
D 4 HOH B 60 195 581 HOH HOH . 
D 4 HOH B 61 196 584 HOH HOH . 
D 4 HOH B 62 197 589 HOH HOH . 
D 4 HOH B 63 198 590 HOH HOH . 
D 4 HOH B 64 199 597 HOH HOH . 
D 4 HOH B 65 200 598 HOH HOH . 
D 4 HOH B 66 201 600 HOH HOH . 
D 4 HOH B 67 202 601 HOH HOH . 
D 4 HOH B 68 203 605 HOH HOH . 
D 4 HOH B 69 204 612 HOH HOH . 
E 4 HOH P 1 143 143 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 LEA . . . C 3 11.298 1.096 -18.674 1 44.67 ? C2 LEA 2 P 1 
HETATM 2 C C3 LEA . . . C 3 10.957 0.014 -19.673 1 53.14 ? C3 LEA 2 P 1 
HETATM 3 C C4 LEA . . . C 3 12.193 -0.706 -20.184 1 60.98 ? C4 LEA 2 P 1 
HETATM 4 C C5 LEA . . . C 3 11.712 -2.154 -20.456 1 69.31 ? C5 LEA 2 P 1 
HETATM 5 C C6 LEA . . . C 3 12.804 -2.971 -21.094 1 74.48 ? C6 LEA 2 P 1 
HETATM 6 O O1 LEA . . . C 3 12.242 1.852 -18.802 1 39.75 ? O1 LEA 2 P 1 
HETATM 7 H H31 LEA . . . C 3 10.277 -0.679 -19.195 1 53.44 ? H31 LEA 2 P 1 
HETATM 8 H H32 LEA . . . C 3 10.438 0.475 -20.501 1 53.47 ? H32 LEA 2 P 1 
HETATM 9 H H41 LEA . . . C 3 12.524 -0.244 -21.103 1 60.91 ? H41 LEA 2 P 1 
HETATM 10 H H42 LEA . . . C 3 12.993 -0.691 -19.458 1 60.69 ? H42 LEA 2 P 1 
HETATM 11 H H51 LEA . . . C 3 11.444 -2.622 -19.516 1 69.19 ? H51 LEA 2 P 1 
HETATM 12 H H52 LEA . . . C 3 10.838 -2.156 -21.096 1 69.38 ? H52 LEA 2 P 1 
HETATM 13 H H61 LEA . . . C 3 13.039 -2.536 -22.053 1 74.91 ? H61 LEA 2 P 1 
HETATM 14 H H63 LEA . . . C 3 12.353 -3.937 -21.28 1 75.22 ? H63 LEA 2 P 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           14 
#