data_1W0Z # _model_server_result.job_id m33RFUjAwchgF9Inf2-bIg _model_server_result.datetime_utc '2025-08-03 06:47:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1w0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1245}' # _entry.id 1W0Z # _exptl.entry_id 1W0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.518 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(BUTYLSULFONYL)-D-SERYL-N-{4-[AMINO(IMINO)METHYL]BENZYL}-L-ALANINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1W0Z _cell.length_a 53.21 _cell.length_b 54.67 _cell.length_c 82.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C18 H29 N5 O5 S' _chem_comp.formula_weight 427.518 _chem_comp.id SI1 _chem_comp.mon_nstd_flag . _chem_comp.name N-(BUTYLSULFONYL)-D-SERYL-N-{4-[AMINO(IMINO)METHYL]BENZYL}-L-ALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C18 SI1 sing 290 n n N4 H41 SI1 sing 291 n n N4 H42 SI1 sing 292 n n N5 C18 SI1 doub 293 e n N5 H51 SI1 sing 294 n n C18 C14 SI1 sing 295 n n C14 C13 SI1 doub 296 n y C14 C15 SI1 sing 297 n y C13 C12 SI1 sing 298 n y C13 H14 SI1 sing 299 n n C12 C17 SI1 doub 300 n y C12 H17 SI1 sing 301 n n C17 C16 SI1 sing 302 n y C17 C11 SI1 sing 303 n n C16 C15 SI1 doub 304 n y C16 H16 SI1 sing 305 n n C15 H15 SI1 sing 306 n n C11 N3 SI1 sing 307 n n C11 H11 SI1 sing 308 n n C11 H12 SI1 sing 309 n n N3 C10 SI1 sing 310 n n N3 H31 SI1 sing 311 n n C10 O5 SI1 doub 312 n n C10 C8 SI1 sing 313 n n C8 N2 SI1 sing 314 n n C8 C9 SI1 sing 315 n n C8 H81 SI1 sing 316 n n N2 C7 SI1 sing 317 n n N2 H21 SI1 sing 318 n n C7 O4 SI1 doub 319 n n C7 C5 SI1 sing 320 n n C5 C6 SI1 sing 321 n n C5 N1 SI1 sing 322 n n C5 H52 SI1 sing 323 n n C6 O3 SI1 sing 324 n n C6 H61 SI1 sing 325 n n C6 H62 SI1 sing 326 n n O3 H32 SI1 sing 327 n n N1 S1 SI1 sing 328 n n N1 H13 SI1 sing 329 n n S1 O2 SI1 doub 330 n n S1 O1 SI1 doub 331 n n S1 C1 SI1 sing 332 n n C1 C4 SI1 sing 333 n n C1 H22 SI1 sing 334 n n C1 H23 SI1 sing 335 n n C4 C3 SI1 sing 336 n n C4 H43 SI1 sing 337 n n C4 H44 SI1 sing 338 n n C3 C2 SI1 sing 339 n n C3 H33 SI1 sing 340 n n C3 H34 SI1 sing 341 n n C2 H24 SI1 sing 342 n n C2 H25 SI1 sing 343 n n C2 H26 SI1 sing 344 n n C9 H91 SI1 sing 345 n n C9 H92 SI1 sing 346 n n C9 H93 SI1 sing 347 n n # _atom_sites.entry_id 1W0Z _atom_sites.fract_transf_matrix[1][1] 0.018793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SI1 U 1 1245 1245 SI1 SI1 . C 3 SO4 U 1 1246 1246 SO4 SO4 . D 3 SO4 U 1 1247 1247 SO4 SO4 . E 4 HOH U 1 2001 2001 HOH HOH . E 4 HOH U 2 2002 2002 HOH HOH . E 4 HOH U 3 2003 2003 HOH HOH . E 4 HOH U 4 2004 2004 HOH HOH . E 4 HOH U 5 2005 2005 HOH HOH . E 4 HOH U 6 2006 2006 HOH HOH . E 4 HOH U 7 2007 2007 HOH HOH . E 4 HOH U 8 2008 2008 HOH HOH . E 4 HOH U 9 2009 2009 HOH HOH . E 4 HOH U 10 2010 2010 HOH HOH . E 4 HOH U 11 2011 2011 HOH HOH . E 4 HOH U 12 2012 2012 HOH HOH . E 4 HOH U 13 2013 2013 HOH HOH . E 4 HOH U 14 2014 2014 HOH HOH . E 4 HOH U 15 2015 2015 HOH HOH . E 4 HOH U 16 2016 2016 HOH HOH . E 4 HOH U 17 2017 2017 HOH HOH . E 4 HOH U 18 2018 2018 HOH HOH . E 4 HOH U 19 2019 2019 HOH HOH . E 4 HOH U 20 2020 2020 HOH HOH . E 4 HOH U 21 2021 2021 HOH HOH . E 4 HOH U 22 2022 2022 HOH HOH . E 4 HOH U 23 2023 2023 HOH HOH . E 4 HOH U 24 2024 2024 HOH HOH . E 4 HOH U 25 2025 2025 HOH HOH . E 4 HOH U 26 2026 2026 HOH HOH . E 4 HOH U 27 2027 2027 HOH HOH . E 4 HOH U 28 2028 2028 HOH HOH . E 4 HOH U 29 2029 2029 HOH HOH . E 4 HOH U 30 2030 2030 HOH HOH . E 4 HOH U 31 2031 2031 HOH HOH . E 4 HOH U 32 2032 2032 HOH HOH . E 4 HOH U 33 2033 2033 HOH HOH . E 4 HOH U 34 2034 2034 HOH HOH . E 4 HOH U 35 2035 2035 HOH HOH . E 4 HOH U 36 2036 2036 HOH HOH . E 4 HOH U 37 2037 2037 HOH HOH . E 4 HOH U 38 2038 2038 HOH HOH . E 4 HOH U 39 2039 2039 HOH HOH . E 4 HOH U 40 2040 2040 HOH HOH . E 4 HOH U 41 2041 2041 HOH HOH . E 4 HOH U 42 2042 2042 HOH HOH . E 4 HOH U 43 2043 2043 HOH HOH . E 4 HOH U 44 2044 2044 HOH HOH . E 4 HOH U 45 2045 2045 HOH HOH . E 4 HOH U 46 2046 2046 HOH HOH . E 4 HOH U 47 2047 2047 HOH HOH . E 4 HOH U 48 2048 2048 HOH HOH . E 4 HOH U 49 2049 2049 HOH HOH . E 4 HOH U 50 2050 2050 HOH HOH . E 4 HOH U 51 2051 2051 HOH HOH . E 4 HOH U 52 2052 2052 HOH HOH . E 4 HOH U 53 2053 2053 HOH HOH . E 4 HOH U 54 2054 2054 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N4 SI1 . . . B 2 34.395 4.77 27.388 1 19.93 ? N4 SI1 1245 U 1 HETATM 2 N N5 SI1 . . . B 2 33.177 2.953 27.899 1 25.35 ? N5 SI1 1245 U 1 HETATM 3 C C18 SI1 . . . B 2 33.187 4.298 27.784 1 22.81 ? C18 SI1 1245 U 1 HETATM 4 C C14 SI1 . . . B 2 32.049 5.094 28.062 1 23.38 ? C14 SI1 1245 U 1 HETATM 5 C C13 SI1 . . . B 2 32.074 6.499 27.889 1 25.45 ? C13 SI1 1245 U 1 HETATM 6 C C12 SI1 . . . B 2 30.972 7.302 28.242 1 26.76 ? C12 SI1 1245 U 1 HETATM 7 C C17 SI1 . . . B 2 29.768 6.721 28.681 1 25.23 ? C17 SI1 1245 U 1 HETATM 8 C C16 SI1 . . . B 2 29.717 5.321 28.817 1 28.32 ? C16 SI1 1245 U 1 HETATM 9 C C15 SI1 . . . B 2 30.844 4.527 28.526 1 25.74 ? C15 SI1 1245 U 1 HETATM 10 C C11 SI1 . . . B 2 28.585 7.563 28.993 1 24.17 ? C11 SI1 1245 U 1 HETATM 11 N N3 SI1 . . . B 2 28.781 8.335 30.159 1 22.32 ? N3 SI1 1245 U 1 HETATM 12 C C10 SI1 . . . B 2 29.071 9.611 30.133 1 27.22 ? C10 SI1 1245 U 1 HETATM 13 O O5 SI1 . . . B 2 29.239 10.205 29.059 1 27.19 ? O5 SI1 1245 U 1 HETATM 14 C C8 SI1 . . . B 2 29.205 10.37 31.381 1 29.13 ? C8 SI1 1245 U 1 HETATM 15 N N2 SI1 . . . B 2 30.302 11.263 31.304 1 27.34 ? N2 SI1 1245 U 1 HETATM 16 C C7 SI1 . . . B 2 31.57 10.928 31.176 1 28.38 ? C7 SI1 1245 U 1 HETATM 17 O O4 SI1 . . . B 2 31.875 9.734 31.079 1 24.3 ? O4 SI1 1245 U 1 HETATM 18 C C5 SI1 . . . B 2 32.666 11.906 31.134 1 28.64 ? C5 SI1 1245 U 1 HETATM 19 C C6 SI1 . . . B 2 33.401 12.104 32.49 1 30.79 ? C6 SI1 1245 U 1 HETATM 20 O O3 SI1 . . . B 2 32.493 12.123 33.595 1 39.41 ? O3 SI1 1245 U 1 HETATM 21 N N1 SI1 . . . B 2 33.798 11.56 30.238 1 33.33 ? N1 SI1 1245 U 1 HETATM 22 S S1 SI1 . . . B 2 33.756 12.14 28.658 1 35.23 ? S1 SI1 1245 U 1 HETATM 23 O O2 SI1 . . . B 2 33.365 13.638 28.602 1 38.44 ? O2 SI1 1245 U 1 HETATM 24 O O1 SI1 . . . B 2 35.184 11.85 28.111 1 33.73 ? O1 SI1 1245 U 1 HETATM 25 C C1 SI1 . . . B 2 32.615 11.143 27.77 1 38.18 ? C1 SI1 1245 U 1 HETATM 26 C C4 SI1 . . . B 2 32.475 11.4 26.251 1 44.66 ? C4 SI1 1245 U 1 HETATM 27 C C3 SI1 . . . B 2 31.457 10.393 25.652 1 45 ? C3 SI1 1245 U 1 HETATM 28 C C2 SI1 . . . B 2 31.343 10.6 24.121 1 48.66 ? C2 SI1 1245 U 1 HETATM 29 C C9 SI1 . . . B 2 27.916 11.198 31.624 1 27.06 ? C9 SI1 1245 U 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #