data_1W10 # _model_server_result.job_id B7lPJ6zKWnMYIuIxCX1WBg _model_server_result.datetime_utc '2025-02-05 12:58:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1w10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1245}' # _entry.id 1W10 # _exptl.entry_id 1W10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 416.473 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(ISOBUTOXYCARBONYL)-D-SERYL-N-((1S)-4-{[AMINO(IMINO)METHYL]AMINO}-1-FORMYLBUTYL)-L-ALANINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1W10 _cell.length_a 53.21 _cell.length_b 54.67 _cell.length_c 82.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A OG SER 198 U SER 195 1_555 B C7 SJ1 . U SJ1 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? # _chem_comp.formula 'C17 H32 N6 O6' _chem_comp.formula_weight 416.473 _chem_comp.id SJ1 _chem_comp.mon_nstd_flag . _chem_comp.name N-(ISOBUTOXYCARBONYL)-D-SERYL-N-((1S)-4-{[AMINO(IMINO)METHYL]AMINO}-1-FORMYLBUTYL)-L-ALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SJ1 doub 290 e n N1 H1 SJ1 sing 291 n n C2 N2 SJ1 sing 292 n n C2 N3 SJ1 sing 293 n n N2 H2N1 SJ1 sing 294 n n N2 H2N2 SJ1 sing 295 n n N3 C3 SJ1 sing 296 n n N3 H3 SJ1 sing 297 n n C3 C4 SJ1 sing 298 n n C3 H3C1 SJ1 sing 299 n n C3 H3C2 SJ1 sing 300 n n C4 C5 SJ1 sing 301 n n C4 H4C1 SJ1 sing 302 n n C4 H4C2 SJ1 sing 303 n n C5 C6 SJ1 sing 304 n n C5 H5C1 SJ1 sing 305 n n C5 H5C2 SJ1 sing 306 n n C6 C7 SJ1 sing 307 n n C6 N4 SJ1 sing 308 n n C6 H6 SJ1 sing 309 n n C7 O1 SJ1 doub 310 e n C7 H7 SJ1 sing 311 n n N4 C8 SJ1 sing 312 n n N4 H4 SJ1 sing 313 n n C8 O2 SJ1 doub 314 n n C8 C9 SJ1 sing 315 n n C9 C10 SJ1 sing 316 n n C9 N5 SJ1 sing 317 n n C9 H9 SJ1 sing 318 n n C10 H101 SJ1 sing 319 n n C10 H102 SJ1 sing 320 n n C10 H103 SJ1 sing 321 n n N5 C11 SJ1 sing 322 n n N5 H5 SJ1 sing 323 n n C11 O3 SJ1 doub 324 n n C11 C12 SJ1 sing 325 n n C12 C13 SJ1 sing 326 n n C12 N6 SJ1 sing 327 n n C12 H12 SJ1 sing 328 n n C13 O4 SJ1 sing 329 n n C13 H131 SJ1 sing 330 n n C13 H132 SJ1 sing 331 n n O4 HB SJ1 sing 332 n n N6 C14 SJ1 sing 333 n n N6 HA SJ1 sing 334 n n C14 O5 SJ1 doub 335 n n C14 O6 SJ1 sing 336 n n O6 C15 SJ1 sing 337 n n C15 C16 SJ1 sing 338 n n C15 H151 SJ1 sing 339 n n C15 H152 SJ1 sing 340 n n C16 C17 SJ1 sing 341 n n C16 C18 SJ1 sing 342 n n C16 H16 SJ1 sing 343 n n C17 H171 SJ1 sing 344 n n C17 H172 SJ1 sing 345 n n C17 H173 SJ1 sing 346 n n C18 H181 SJ1 sing 347 n n C18 H182 SJ1 sing 348 n n C18 H183 SJ1 sing 349 n n # _atom_sites.entry_id 1W10 _atom_sites.fract_transf_matrix[1][1] 0.018793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SJ1 U 1 1245 1245 SJ1 SJ1 . C 3 SO4 U 1 1246 1246 SO4 SO4 . D 3 SO4 U 1 1247 1247 SO4 SO4 . E 4 HOH U 1 2001 2001 HOH HOH . E 4 HOH U 2 2002 2002 HOH HOH . E 4 HOH U 3 2003 2003 HOH HOH . E 4 HOH U 4 2004 2004 HOH HOH . E 4 HOH U 5 2005 2005 HOH HOH . E 4 HOH U 6 2006 2006 HOH HOH . E 4 HOH U 7 2007 2007 HOH HOH . E 4 HOH U 8 2008 2008 HOH HOH . E 4 HOH U 9 2009 2009 HOH HOH . E 4 HOH U 10 2010 2010 HOH HOH . E 4 HOH U 11 2011 2011 HOH HOH . E 4 HOH U 12 2012 2012 HOH HOH . E 4 HOH U 13 2013 2013 HOH HOH . E 4 HOH U 14 2014 2014 HOH HOH . E 4 HOH U 15 2015 2015 HOH HOH . E 4 HOH U 16 2016 2016 HOH HOH . E 4 HOH U 17 2017 2017 HOH HOH . E 4 HOH U 18 2018 2018 HOH HOH . E 4 HOH U 19 2019 2019 HOH HOH . E 4 HOH U 20 2020 2020 HOH HOH . E 4 HOH U 21 2021 2021 HOH HOH . E 4 HOH U 22 2022 2022 HOH HOH . E 4 HOH U 23 2023 2023 HOH HOH . E 4 HOH U 24 2024 2024 HOH HOH . E 4 HOH U 25 2025 2025 HOH HOH . E 4 HOH U 26 2026 2026 HOH HOH . E 4 HOH U 27 2027 2027 HOH HOH . E 4 HOH U 28 2028 2028 HOH HOH . E 4 HOH U 29 2029 2029 HOH HOH . E 4 HOH U 30 2030 2030 HOH HOH . E 4 HOH U 31 2031 2031 HOH HOH . E 4 HOH U 32 2032 2032 HOH HOH . E 4 HOH U 33 2033 2033 HOH HOH . E 4 HOH U 34 2034 2034 HOH HOH . E 4 HOH U 35 2035 2035 HOH HOH . E 4 HOH U 36 2036 2036 HOH HOH . E 4 HOH U 37 2037 2037 HOH HOH . E 4 HOH U 38 2038 2038 HOH HOH . E 4 HOH U 39 2039 2039 HOH HOH . E 4 HOH U 40 2040 2040 HOH HOH . E 4 HOH U 41 2041 2041 HOH HOH . E 4 HOH U 42 2042 2042 HOH HOH . E 4 HOH U 43 2043 2043 HOH HOH . E 4 HOH U 44 2044 2044 HOH HOH . E 4 HOH U 45 2045 2045 HOH HOH . E 4 HOH U 46 2046 2046 HOH HOH . E 4 HOH U 47 2047 2047 HOH HOH . E 4 HOH U 48 2048 2048 HOH HOH . E 4 HOH U 49 2049 2049 HOH HOH . E 4 HOH U 50 2050 2050 HOH HOH . E 4 HOH U 51 2051 2051 HOH HOH . E 4 HOH U 52 2052 2052 HOH HOH . E 4 HOH U 53 2053 2053 HOH HOH . E 4 HOH U 54 2054 2054 HOH HOH . E 4 HOH U 55 2055 2055 HOH HOH . E 4 HOH U 56 2056 2056 HOH HOH . E 4 HOH U 57 2057 2057 HOH HOH . E 4 HOH U 58 2058 2058 HOH HOH . E 4 HOH U 59 2059 2059 HOH HOH . E 4 HOH U 60 2060 2060 HOH HOH . E 4 HOH U 61 2061 2061 HOH HOH . E 4 HOH U 62 2062 2062 HOH HOH . E 4 HOH U 63 2063 2063 HOH HOH . E 4 HOH U 64 2064 2064 HOH HOH . E 4 HOH U 65 2065 2065 HOH HOH . E 4 HOH U 66 2066 2066 HOH HOH . E 4 HOH U 67 2067 2067 HOH HOH . E 4 HOH U 68 2068 2068 HOH HOH . E 4 HOH U 69 2069 2069 HOH HOH . E 4 HOH U 70 2070 2070 HOH HOH . E 4 HOH U 71 2071 2071 HOH HOH . E 4 HOH U 72 2072 2072 HOH HOH . E 4 HOH U 73 2073 2073 HOH HOH . E 4 HOH U 74 2074 2074 HOH HOH . E 4 HOH U 75 2075 2075 HOH HOH . E 4 HOH U 76 2076 2076 HOH HOH . E 4 HOH U 77 2077 2077 HOH HOH . E 4 HOH U 78 2078 2078 HOH HOH . E 4 HOH U 79 2079 2079 HOH HOH . E 4 HOH U 80 2080 2080 HOH HOH . E 4 HOH U 81 2081 2081 HOH HOH . E 4 HOH U 82 2082 2082 HOH HOH . E 4 HOH U 83 2083 2083 HOH HOH . E 4 HOH U 84 2084 2084 HOH HOH . E 4 HOH U 85 2085 2085 HOH HOH . E 4 HOH U 86 2086 2086 HOH HOH . E 4 HOH U 87 2087 2087 HOH HOH . E 4 HOH U 88 2088 2088 HOH HOH . E 4 HOH U 89 2089 2089 HOH HOH . E 4 HOH U 90 2090 2090 HOH HOH . E 4 HOH U 91 2091 2091 HOH HOH . E 4 HOH U 92 2092 2092 HOH HOH . E 4 HOH U 93 2093 2093 HOH HOH . E 4 HOH U 94 2094 2094 HOH HOH . E 4 HOH U 95 2095 2095 HOH HOH . E 4 HOH U 96 2096 2096 HOH HOH . E 4 HOH U 97 2097 2097 HOH HOH . E 4 HOH U 98 2098 2098 HOH HOH . E 4 HOH U 99 2099 2099 HOH HOH . E 4 HOH U 100 2100 2100 HOH HOH . E 4 HOH U 101 2101 2101 HOH HOH . E 4 HOH U 102 2102 2102 HOH HOH . E 4 HOH U 103 2103 2103 HOH HOH . E 4 HOH U 104 2104 2104 HOH HOH . E 4 HOH U 105 2105 2105 HOH HOH . E 4 HOH U 106 2106 2106 HOH HOH . E 4 HOH U 107 2107 2107 HOH HOH . E 4 HOH U 108 2108 2108 HOH HOH . E 4 HOH U 109 2109 2109 HOH HOH . E 4 HOH U 110 2110 2110 HOH HOH . E 4 HOH U 111 2111 2111 HOH HOH . E 4 HOH U 112 2112 2112 HOH HOH . E 4 HOH U 113 2113 2113 HOH HOH . E 4 HOH U 114 2114 2114 HOH HOH . E 4 HOH U 115 2115 2115 HOH HOH . E 4 HOH U 116 2116 2116 HOH HOH . E 4 HOH U 117 2117 2117 HOH HOH . E 4 HOH U 118 2118 2118 HOH HOH . E 4 HOH U 119 2119 2119 HOH HOH . E 4 HOH U 120 2120 2120 HOH HOH . E 4 HOH U 121 2121 2121 HOH HOH . E 4 HOH U 122 2122 2122 HOH HOH . E 4 HOH U 123 2123 2123 HOH HOH . E 4 HOH U 124 2124 2124 HOH HOH . E 4 HOH U 125 2125 2125 HOH HOH . E 4 HOH U 126 2126 2126 HOH HOH . E 4 HOH U 127 2127 2127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SJ1 . . . B 2 34.08 4.824 27.412 1 15.44 ? N1 SJ1 1245 U 1 HETATM 2 C C2 SJ1 . . . B 2 32.846 4.435 27.772 1 16.42 ? C2 SJ1 1245 U 1 HETATM 3 N N2 SJ1 . . . B 2 32.628 3.107 27.933 1 16.46 ? N2 SJ1 1245 U 1 HETATM 4 N N3 SJ1 . . . B 2 31.928 5.387 27.952 1 17.84 ? N3 SJ1 1245 U 1 HETATM 5 C C3 SJ1 . . . B 2 30.634 5.091 28.397 1 15.98 ? C3 SJ1 1245 U 1 HETATM 6 C C4 SJ1 . . . B 2 29.817 6.404 28.399 1 16.88 ? C4 SJ1 1245 U 1 HETATM 7 C C5 SJ1 . . . B 2 28.335 6.151 28.761 1 16.59 ? C5 SJ1 1245 U 1 HETATM 8 C C6 SJ1 . . . B 2 27.641 7.513 28.968 1 16.84 ? C6 SJ1 1245 U 1 HETATM 9 C C7 SJ1 . . . B 2 26.184 7.437 29.071 1 16.91 ? C7 SJ1 1245 U 1 HETATM 10 O O1 SJ1 . . . B 2 25.431 8.359 29.432 1 18.09 ? O1 SJ1 1245 U 1 HETATM 11 N N4 SJ1 . . . B 2 28.133 8.159 30.155 1 15.81 ? N4 SJ1 1245 U 1 HETATM 12 C C8 SJ1 . . . B 2 28.426 9.442 30.135 1 17.84 ? C8 SJ1 1245 U 1 HETATM 13 O O2 SJ1 . . . B 2 28.366 10.158 29.101 1 15.39 ? O2 SJ1 1245 U 1 HETATM 14 C C9 SJ1 . . . B 2 28.852 10.087 31.385 1 17.93 ? C9 SJ1 1245 U 1 HETATM 15 C C10 SJ1 . . . B 2 27.627 10.87 31.912 1 16.24 ? C10 SJ1 1245 U 1 HETATM 16 N N5 SJ1 . . . B 2 29.893 11.017 31.146 1 18.96 ? N5 SJ1 1245 U 1 HETATM 17 C C11 SJ1 . . . B 2 31.112 10.728 30.719 1 22.53 ? C11 SJ1 1245 U 1 HETATM 18 O O3 SJ1 . . . B 2 31.408 9.552 30.456 1 19.96 ? O3 SJ1 1245 U 1 HETATM 19 C C12 SJ1 . . . B 2 32.103 11.793 30.557 1 24.57 ? C12 SJ1 1245 U 1 HETATM 20 C C13 SJ1 . . . B 2 32.828 12.147 31.88 1 24.89 ? C13 SJ1 1245 U 1 HETATM 21 O O4 SJ1 . . . B 2 33.468 10.934 32.303 1 29.97 ? O4 SJ1 1245 U 1 HETATM 22 N N6 SJ1 . . . B 2 33.081 11.393 29.609 1 28.51 ? N6 SJ1 1245 U 1 HETATM 23 C C14 SJ1 . . . B 2 33.183 11.855 28.388 1 35.08 ? C14 SJ1 1245 U 1 HETATM 24 O O5 SJ1 . . . B 2 34.103 11.436 27.668 1 36.24 ? O5 SJ1 1245 U 1 HETATM 25 O O6 SJ1 . . . B 2 32.387 12.7 27.911 1 38.38 ? O6 SJ1 1245 U 1 HETATM 26 C C15 SJ1 . . . B 2 32.569 13.72 27.049 1 41.86 ? C15 SJ1 1245 U 1 HETATM 27 C C16 SJ1 . . . B 2 31.414 13.748 26.007 1 42.88 ? C16 SJ1 1245 U 1 HETATM 28 C C17 SJ1 . . . B 2 31.885 12.895 24.795 1 45.64 ? C17 SJ1 1245 U 1 HETATM 29 C C18 SJ1 . . . B 2 31.132 15.191 25.515 1 43.3 ? C18 SJ1 1245 U 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #