data_1W14
#
_model_server_result.job_id            X8hOKvNZyK-OZyj0rRigzA 
_model_server_result.datetime_utc      '2024-11-22 04:34:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1w14 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1300}' 
#
_entry.id    1W14 
#
_exptl.entry_id    1W14 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              486.586 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2-PHENYLETHYL)SULFONYL]-D-SERYL-N-[(1S)-4-[(DIAMINOMETHYLENE)AMINO]-1-(HYDROXYMETHYL)BUTYL]-L-ALANINAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1W14 
_cell.length_a            53.46 
_cell.length_b            54.77 
_cell.length_c            82.38 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1W14 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A OG SER 198 U SER 195 1_555 D C20 SH1 . U SH1 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? 
#
_chem_comp.formula           'C20 H34 N6 O6 S' 
_chem_comp.formula_weight    486.586 
_chem_comp.id                SH1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2-PHENYLETHYL)SULFONYL]-D-SERYL-N-[(1S)-4-[(DIAMINOMETHYLENE)AMINO]-1-(HYDROXYMETHYL)BUTYL]-L-ALANINAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SH1 sing 290 n n 
C1 S1 SH1 sing 291 n n 
C1 H1C1 SH1 sing 292 n n 
C1 H1C2 SH1 sing 293 n n 
C2 C3 SH1 sing 294 n n 
C2 H2C1 SH1 sing 295 n n 
C2 H2C2 SH1 sing 296 n n 
C3 C4 SH1 doub 297 n y 
C3 C5 SH1 sing 298 n y 
C4 C6 SH1 sing 299 n y 
C4 H4 SH1 sing 300 n n 
C5 C7 SH1 doub 301 n y 
C5 H5 SH1 sing 302 n n 
C6 C8 SH1 doub 303 n y 
C6 H6 SH1 sing 304 n n 
C7 C8 SH1 sing 305 n y 
C7 H7 SH1 sing 306 n n 
C8 H8 SH1 sing 307 n n 
S1 O1 SH1 doub 308 n n 
S1 O2 SH1 doub 309 n n 
S1 N1 SH1 sing 310 n n 
N1 C9 SH1 sing 311 n n 
N1 H1 SH1 sing 312 n n 
C9 C10 SH1 sing 313 n n 
C9 C11 SH1 sing 314 n n 
C9 H9 SH1 sing 315 n n 
C10 O3 SH1 sing 316 n n 
C10 H101 SH1 sing 317 n n 
C10 H102 SH1 sing 318 n n 
O3 H3 SH1 sing 319 n n 
C11 O4 SH1 doub 320 n n 
C11 N2 SH1 sing 321 n n 
N2 C12 SH1 sing 322 n n 
N2 H2 SH1 sing 323 n n 
C12 C13 SH1 sing 324 n n 
C12 C14 SH1 sing 325 n n 
C12 H12 SH1 sing 326 n n 
C13 H131 SH1 sing 327 n n 
C13 H132 SH1 sing 328 n n 
C13 H133 SH1 sing 329 n n 
C14 O5 SH1 doub 330 n n 
C14 N3 SH1 sing 331 n n 
N3 C15 SH1 sing 332 n n 
N3 HA SH1 sing 333 n n 
C15 C16 SH1 sing 334 n n 
C15 C20 SH1 sing 335 n n 
C15 H15 SH1 sing 336 n n 
C16 C17 SH1 sing 337 n n 
C16 H161 SH1 sing 338 n n 
C16 H162 SH1 sing 339 n n 
C17 C18 SH1 sing 340 n n 
C17 H171 SH1 sing 341 n n 
C17 H172 SH1 sing 342 n n 
C18 N4 SH1 sing 343 n n 
C18 H181 SH1 sing 344 n n 
C18 H182 SH1 sing 345 n n 
N4 C19 SH1 doub 346 n n 
C19 N5 SH1 sing 347 n n 
C19 N6 SH1 sing 348 n n 
N5 H5N1 SH1 sing 349 n n 
N5 H5N2 SH1 sing 350 n n 
N6 H6N1 SH1 sing 351 n n 
N6 H6N2 SH1 sing 352 n n 
C20 O6 SH1 sing 353 n n 
C20 H201 SH1 sing 354 n n 
C20 H202 SH1 sing 355 n n 
O6 HB SH1 sing 356 n n 
#
_atom_sites.entry_id                     1W14 
_atom_sites.fract_transf_matrix[1][1]    0.018706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018258 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 U 1 1245 1245 SO4 SO4 . 
C 2 SO4 U 1 1246 1246 SO4 SO4 . 
D 3 SH1 U 1 1300 1300 SH1 SH1 . 
E 4 HOH U 1 2001 2001 HOH HOH . 
E 4 HOH U 2 2002 2002 HOH HOH . 
E 4 HOH U 3 2003 2003 HOH HOH . 
E 4 HOH U 4 2004 2004 HOH HOH . 
E 4 HOH U 5 2005 2005 HOH HOH . 
E 4 HOH U 6 2006 2006 HOH HOH . 
E 4 HOH U 7 2007 2007 HOH HOH . 
E 4 HOH U 8 2008 2008 HOH HOH . 
E 4 HOH U 9 2009 2009 HOH HOH . 
E 4 HOH U 10 2010 2010 HOH HOH . 
E 4 HOH U 11 2011 2011 HOH HOH . 
E 4 HOH U 12 2012 2012 HOH HOH . 
E 4 HOH U 13 2013 2013 HOH HOH . 
E 4 HOH U 14 2014 2014 HOH HOH . 
E 4 HOH U 15 2015 2015 HOH HOH . 
E 4 HOH U 16 2016 2016 HOH HOH . 
E 4 HOH U 17 2017 2017 HOH HOH . 
E 4 HOH U 18 2018 2018 HOH HOH . 
E 4 HOH U 19 2019 2019 HOH HOH . 
E 4 HOH U 20 2020 2020 HOH HOH . 
E 4 HOH U 21 2021 2021 HOH HOH . 
E 4 HOH U 22 2022 2022 HOH HOH . 
E 4 HOH U 23 2023 2023 HOH HOH . 
E 4 HOH U 24 2024 2024 HOH HOH . 
E 4 HOH U 25 2025 2025 HOH HOH . 
E 4 HOH U 26 2026 2026 HOH HOH . 
E 4 HOH U 27 2027 2027 HOH HOH . 
E 4 HOH U 28 2028 2028 HOH HOH . 
E 4 HOH U 29 2029 2029 HOH HOH . 
E 4 HOH U 30 2030 2030 HOH HOH . 
E 4 HOH U 31 2031 2031 HOH HOH . 
E 4 HOH U 32 2032 2032 HOH HOH . 
E 4 HOH U 33 2033 2033 HOH HOH . 
E 4 HOH U 34 2034 2034 HOH HOH . 
E 4 HOH U 35 2035 2035 HOH HOH . 
E 4 HOH U 36 2036 2036 HOH HOH . 
E 4 HOH U 37 2037 2037 HOH HOH . 
E 4 HOH U 38 2038 2038 HOH HOH . 
E 4 HOH U 39 2039 2039 HOH HOH . 
E 4 HOH U 40 2040 2040 HOH HOH . 
E 4 HOH U 41 2041 2041 HOH HOH . 
E 4 HOH U 42 2042 2042 HOH HOH . 
E 4 HOH U 43 2043 2043 HOH HOH . 
E 4 HOH U 44 2044 2044 HOH HOH . 
E 4 HOH U 45 2045 2045 HOH HOH . 
E 4 HOH U 46 2046 2046 HOH HOH . 
E 4 HOH U 47 2047 2047 HOH HOH . 
E 4 HOH U 48 2048 2048 HOH HOH . 
E 4 HOH U 49 2049 2049 HOH HOH . 
E 4 HOH U 50 2050 2050 HOH HOH . 
E 4 HOH U 51 2051 2051 HOH HOH . 
E 4 HOH U 52 2052 2052 HOH HOH . 
E 4 HOH U 53 2053 2053 HOH HOH . 
E 4 HOH U 54 2054 2054 HOH HOH . 
E 4 HOH U 55 2055 2055 HOH HOH . 
E 4 HOH U 56 2056 2056 HOH HOH . 
E 4 HOH U 57 2057 2057 HOH HOH . 
E 4 HOH U 58 2058 2058 HOH HOH . 
E 4 HOH U 59 2059 2059 HOH HOH . 
E 4 HOH U 60 2060 2060 HOH HOH . 
E 4 HOH U 61 2061 2061 HOH HOH . 
E 4 HOH U 62 2062 2062 HOH HOH . 
E 4 HOH U 63 2063 2063 HOH HOH . 
E 4 HOH U 64 2064 2064 HOH HOH . 
E 4 HOH U 65 2065 2065 HOH HOH . 
E 4 HOH U 66 2066 2066 HOH HOH . 
E 4 HOH U 67 2067 2067 HOH HOH . 
E 4 HOH U 68 2068 2068 HOH HOH . 
E 4 HOH U 69 2069 2069 HOH HOH . 
E 4 HOH U 70 2070 2070 HOH HOH . 
E 4 HOH U 71 2071 2071 HOH HOH . 
E 4 HOH U 72 2072 2072 HOH HOH . 
E 4 HOH U 73 2073 2073 HOH HOH . 
E 4 HOH U 74 2074 2074 HOH HOH . 
E 4 HOH U 75 2075 2075 HOH HOH . 
E 4 HOH U 76 2076 2076 HOH HOH . 
E 4 HOH U 77 2077 2077 HOH HOH . 
E 4 HOH U 78 2078 2078 HOH HOH . 
E 4 HOH U 79 2079 2079 HOH HOH . 
E 4 HOH U 80 2080 2080 HOH HOH . 
E 4 HOH U 81 2081 2081 HOH HOH . 
E 4 HOH U 82 2082 2082 HOH HOH . 
E 4 HOH U 83 2083 2083 HOH HOH . 
E 4 HOH U 84 2084 2084 HOH HOH . 
E 4 HOH U 85 2085 2085 HOH HOH . 
E 4 HOH U 86 2086 2086 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SH1 . . . D 3 32.704 12 27.383 1 40.49 ? C1 SH1 1300 U 1 
HETATM 2 C C2 SH1 . . . D 3 32.735 12.937 26.196 1 44.22 ? C2 SH1 1300 U 1 
HETATM 3 C C3 SH1 . . . D 3 33.619 12.438 25.057 1 47.48 ? C3 SH1 1300 U 1 
HETATM 4 C C4 SH1 . . . D 3 33.219 11.351 24.274 1 48.42 ? C4 SH1 1300 U 1 
HETATM 5 C C5 SH1 . . . D 3 34.832 13.08 24.799 1 47.96 ? C5 SH1 1300 U 1 
HETATM 6 C C6 SH1 . . . D 3 33.991 10.956 23.185 1 49.26 ? C6 SH1 1300 U 1 
HETATM 7 C C7 SH1 . . . D 3 35.585 12.679 23.708 1 48.02 ? C7 SH1 1300 U 1 
HETATM 8 C C8 SH1 . . . D 3 35.166 11.637 22.895 1 48.12 ? C8 SH1 1300 U 1 
HETATM 9 S S1 SH1 . . . D 3 33.989 12.331 28.599 1 34.49 ? S1 SH1 1300 U 1 
HETATM 10 O O1 SH1 . . . D 3 35.647 11.847 28.245 1 38.57 ? O1 SH1 1300 U 1 
HETATM 11 O O2 SH1 . . . D 3 34.056 14.056 28.973 1 38.35 ? O2 SH1 1300 U 1 
HETATM 12 N N1 SH1 . . . D 3 33.547 11.405 30.013 1 35.96 ? N1 SH1 1300 U 1 
HETATM 13 C C9 SH1 . . . D 3 32.461 11.922 30.786 1 32.49 ? C9 SH1 1300 U 1 
HETATM 14 C C10 SH1 . . . D 3 33.148 12.283 32.094 1 33.5 ? C10 SH1 1300 U 1 
HETATM 15 O O3 SH1 . . . D 3 33.848 11.125 32.535 1 35.06 ? O3 SH1 1300 U 1 
HETATM 16 C C11 SH1 . . . D 3 31.427 10.806 30.886 1 29.46 ? C11 SH1 1300 U 1 
HETATM 17 O O4 SH1 . . . D 3 31.731 9.636 30.59 1 29.46 ? O4 SH1 1300 U 1 
HETATM 18 N N2 SH1 . . . D 3 30.21 11.161 31.302 1 28.39 ? N2 SH1 1300 U 1 
HETATM 19 C C12 SH1 . . . D 3 29.148 10.212 31.499 1 26.15 ? C12 SH1 1300 U 1 
HETATM 20 C C13 SH1 . . . D 3 27.995 10.943 32.138 1 22.58 ? C13 SH1 1300 U 1 
HETATM 21 C C14 SH1 . . . D 3 28.761 9.593 30.15 1 26.56 ? C14 SH1 1300 U 1 
HETATM 22 O O5 SH1 . . . D 3 28.703 10.259 29.086 1 26.16 ? O5 SH1 1300 U 1 
HETATM 23 N N3 SH1 . . . D 3 28.502 8.286 30.24 1 23.56 ? N3 SH1 1300 U 1 
HETATM 24 C C15 SH1 . . . D 3 28.025 7.562 29.073 1 24.11 ? C15 SH1 1300 U 1 
HETATM 25 C C16 SH1 . . . D 3 28.744 6.245 28.848 1 23.91 ? C16 SH1 1300 U 1 
HETATM 26 C C17 SH1 . . . D 3 30.229 6.468 28.667 1 22.38 ? C17 SH1 1300 U 1 
HETATM 27 C C18 SH1 . . . D 3 30.854 5.151 28.307 1 19.09 ? C18 SH1 1300 U 1 
HETATM 28 N N4 SH1 . . . D 3 32.247 5.41 28.042 1 20.13 ? N4 SH1 1300 U 1 
HETATM 29 C C19 SH1 . . . D 3 33.152 4.444 27.886 1 20.25 ? C19 SH1 1300 U 1 
HETATM 30 N N5 SH1 . . . D 3 32.826 3.144 27.971 1 22.39 ? N5 SH1 1300 U 1 
HETATM 31 N N6 SH1 . . . D 3 34.411 4.809 27.642 1 19.38 ? N6 SH1 1300 U 1 
HETATM 32 C C20 SH1 . . . D 3 26.509 7.349 29.184 1 22.72 ? C20 SH1 1300 U 1 
HETATM 33 O O6 SH1 . . . D 3 25.817 8.54 29.565 1 22.5 ? O6 SH1 1300 U 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#