data_1W1G # _model_server_result.job_id NusRnU11sPKpPDFoa3CPqA _model_server_result.datetime_utc '2024-12-01 17:02:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1w1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1550}' # _entry.id 1W1G # _exptl.entry_id 1W1G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 716.35 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXY BUTOXY)PROPYL BUTYRATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.33 _cell.angle_gamma 90 _cell.entry_id 1W1G _cell.length_a 35.264 _cell.length_b 58.943 _cell.length_c 36.44 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H36 O22 P4' _chem_comp.formula_weight 716.35 _chem_comp.id 4PT _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXY BUTOXY)PROPYL BUTYRATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIC4-PHOSPHATIDYLINOSITOL(3,4,5)TRISPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O0F C0E 4PT sing 1 n n O0F C0L 4PT sing 2 n n C0E C0C 4PT sing 3 n n C0E H0E1 4PT sing 4 n n C0E H0E2 4PT sing 5 n n C0C O0D 4PT sing 6 n n C0C C0B 4PT sing 7 n n C0C H0C 4PT sing 8 n n O0D C0G 4PT sing 9 n n C0B OP1 4PT sing 10 n n C0B H0B1 4PT sing 11 n n C0B H0B2 4PT sing 12 n n OP1 P1 4PT sing 13 n n P1 OP3 4PT sing 14 n n P1 OP2 4PT doub 15 n n P1 O1 4PT sing 16 n n OP3 HP3 4PT sing 17 n n O1 C1 4PT sing 18 n n C1 C2 4PT sing 19 n n C1 C6 4PT sing 20 n n C1 H1 4PT sing 21 n n C2 O2 4PT sing 22 n n C2 C3 4PT sing 23 n n C2 H2 4PT sing 24 n n O2 HA 4PT sing 25 n n C3 O3 4PT sing 26 n n C3 C4 4PT sing 27 n n C3 H3 4PT sing 28 n n O3 P3 4PT sing 29 n n P3 O11 4PT sing 30 n n P3 O10 4PT sing 31 n n P3 O12 4PT doub 32 n n O11 H11 4PT sing 33 n n O10 H10 4PT sing 34 n n C4 O4 4PT sing 35 n n C4 C5 4PT sing 36 n n C4 H4 4PT sing 37 n n O4 P4 4PT sing 38 n n P4 OP5 4PT sing 39 n n P4 OP6 4PT sing 40 n n P4 OP4 4PT doub 41 n n OP5 HP5 4PT sing 42 n n OP6 HP6 4PT sing 43 n n C5 O5 4PT sing 44 n n C5 C6 4PT sing 45 n n C5 H5 4PT sing 46 n n O5 P5 4PT sing 47 n n P5 OP8 4PT sing 48 n n P5 OP7 4PT sing 49 n n P5 OP9 4PT doub 50 n n OP8 HP8 4PT sing 51 n n OP7 HP7 4PT sing 52 n n C6 O6 4PT sing 53 n n C6 H6 4PT sing 54 n n O6 HB 4PT sing 55 n n C0L O0M 4PT doub 56 n n C0L C0N 4PT sing 57 n n C0N C0P 4PT sing 58 n n C0N H0N1 4PT sing 59 n n C0N H0N2 4PT sing 60 n n C0P C0Q 4PT sing 61 n n C0P H0P1 4PT sing 62 n n C0P H0P2 4PT sing 63 n n C0Q H0Q1 4PT sing 64 n n C0Q H0Q2 4PT sing 65 n n C0Q H0Q3 4PT sing 66 n n C0G O0H 4PT sing 67 n n C0G C0I 4PT sing 68 n n C0G H0G 4PT sing 69 n n O0H H0H 4PT sing 70 n n C0I C0J 4PT sing 71 n n C0I H0I1 4PT sing 72 n n C0I H0I2 4PT sing 73 n n C0J C0K 4PT sing 74 n n C0J H0J1 4PT sing 75 n n C0J H0J2 4PT sing 76 n n C0K H0K1 4PT sing 77 n n C0K H0K2 4PT sing 78 n n C0K H0K3 4PT sing 79 n n # _atom_sites.entry_id 1W1G _atom_sites.fract_transf_matrix[1][1] 0.028357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006201 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4PT A 1 1550 1550 4PT 4PT . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . C 3 HOH A 109 2109 2109 HOH HOH . C 3 HOH A 110 2110 2110 HOH HOH . C 3 HOH A 111 2111 2111 HOH HOH . C 3 HOH A 112 2112 2112 HOH HOH . C 3 HOH A 113 2113 2113 HOH HOH . C 3 HOH A 114 2114 2114 HOH HOH . C 3 HOH A 115 2115 2115 HOH HOH . C 3 HOH A 116 2116 2116 HOH HOH . C 3 HOH A 117 2117 2117 HOH HOH . C 3 HOH A 118 2118 2118 HOH HOH . C 3 HOH A 119 2119 2119 HOH HOH . C 3 HOH A 120 2120 2120 HOH HOH . C 3 HOH A 121 2121 2121 HOH HOH . C 3 HOH A 122 2122 2122 HOH HOH . C 3 HOH A 123 2123 2123 HOH HOH . C 3 HOH A 124 2124 2124 HOH HOH . C 3 HOH A 125 2125 2125 HOH HOH . C 3 HOH A 126 2126 2126 HOH HOH . C 3 HOH A 127 2127 2127 HOH HOH . C 3 HOH A 128 2128 2128 HOH HOH . C 3 HOH A 129 2129 2129 HOH HOH . C 3 HOH A 130 2130 2130 HOH HOH . C 3 HOH A 131 2131 2131 HOH HOH . C 3 HOH A 132 2132 2132 HOH HOH . C 3 HOH A 133 2133 2133 HOH HOH . C 3 HOH A 134 2134 2134 HOH HOH . C 3 HOH A 135 2135 2135 HOH HOH . C 3 HOH A 136 2136 2136 HOH HOH . C 3 HOH A 137 2137 2137 HOH HOH . C 3 HOH A 138 2138 2138 HOH HOH . C 3 HOH A 139 2139 2139 HOH HOH . C 3 HOH A 140 2140 2140 HOH HOH . C 3 HOH A 141 2141 2141 HOH HOH . C 3 HOH A 142 2142 2142 HOH HOH . C 3 HOH A 143 2143 2143 HOH HOH . C 3 HOH A 144 2144 2144 HOH HOH . C 3 HOH A 145 2145 2145 HOH HOH . C 3 HOH A 146 2146 2146 HOH HOH . C 3 HOH A 147 2147 2147 HOH HOH . C 3 HOH A 148 2148 2148 HOH HOH . C 3 HOH A 149 2149 2149 HOH HOH . C 3 HOH A 150 2150 2150 HOH HOH . C 3 HOH A 151 2151 2151 HOH HOH . C 3 HOH A 152 2152 2152 HOH HOH . C 3 HOH A 153 2153 2153 HOH HOH . C 3 HOH A 154 2154 2154 HOH HOH . C 3 HOH A 155 2155 2155 HOH HOH . C 3 HOH A 156 2156 2156 HOH HOH . C 3 HOH A 157 2157 2157 HOH HOH . C 3 HOH A 158 2158 2158 HOH HOH . C 3 HOH A 159 2159 2159 HOH HOH . C 3 HOH A 160 2160 2160 HOH HOH . C 3 HOH A 161 2161 2161 HOH HOH . C 3 HOH A 162 2162 2162 HOH HOH . C 3 HOH A 163 2163 2163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O0F 4PT . . . B 2 11.531 38.493 0.495 1 56.22 ? O0F 4PT 1550 A 1 HETATM 2 C C0E 4PT . . . B 2 10.678 37.403 0.072 1 54.01 ? C0E 4PT 1550 A 1 HETATM 3 C C0C 4PT . . . B 2 9.676 37.103 1.187 1 49.98 ? C0C 4PT 1550 A 1 HETATM 4 O O0D 4PT . . . B 2 8.963 35.904 0.903 1 52.55 ? O0D 4PT 1550 A 1 HETATM 5 C C0B 4PT . . . B 2 10.379 36.895 2.541 1 48.16 ? C0B 4PT 1550 A 1 HETATM 6 O OP1 4PT . . . B 2 9.387 36.736 3.572 1 42.13 ? OP1 4PT 1550 A 1 HETATM 7 P P1 4PT . . . B 2 9.63 37.419 4.969 1 39.13 ? P1 4PT 1550 A 1 HETATM 8 O OP3 4PT . . . B 2 8.32 37.029 5.836 1 38.15 ? OP3 4PT 1550 A 1 HETATM 9 O OP2 4PT . . . B 2 9.857 38.891 4.868 1 37.83 ? OP2 4PT 1550 A 1 HETATM 10 O O1 4PT . . . B 2 10.932 36.772 5.569 1 34.57 ? O1 4PT 1550 A 1 HETATM 11 C C1 4PT . . . B 2 10.878 35.357 5.841 1 31.01 ? C1 4PT 1550 A 1 HETATM 12 C C2 4PT . . . B 2 10.537 35.066 7.325 1 28.28 ? C2 4PT 1550 A 1 HETATM 13 O O2 4PT . . . B 2 11.522 35.649 8.194 1 28.48 ? O2 4PT 1550 A 1 HETATM 14 C C3 4PT . . . B 2 10.586 33.528 7.549 1 28.24 ? C3 4PT 1550 A 1 HETATM 15 O O3 4PT . . . B 2 10.329 33.236 8.932 1 28.1 ? O3 4PT 1550 A 1 HETATM 16 P P3 4PT . . . B 2 8.999 32.356 9.171 1 32.26 ? P3 4PT 1550 A 1 HETATM 17 O O11 4PT . . . B 2 7.763 33.127 8.619 1 29.64 ? O11 4PT 1550 A 1 HETATM 18 O O10 4PT . . . B 2 8.908 32.304 10.782 1 29.88 ? O10 4PT 1550 A 1 HETATM 19 O O12 4PT . . . B 2 9.077 31.01 8.485 1 32.07 ? O12 4PT 1550 A 1 HETATM 20 C C4 4PT . . . B 2 11.958 32.933 7.207 1 31.09 ? C4 4PT 1550 A 1 HETATM 21 O O4 4PT . . . B 2 11.907 31.5 7.265 1 31.44 ? O4 4PT 1550 A 1 HETATM 22 P P4 4PT . . . B 2 12.465 30.732 8.607 1 32.36 ? P4 4PT 1550 A 1 HETATM 23 O OP5 4PT . . . B 2 11.127 29.989 9.033 1 34.28 ? OP5 4PT 1550 A 1 HETATM 24 O OP6 4PT . . . B 2 13.552 29.777 8.017 1 32.93 ? OP6 4PT 1550 A 1 HETATM 25 O OP4 4PT . . . B 2 13.151 31.688 9.573 1 29.73 ? OP4 4PT 1550 A 1 HETATM 26 C C5 4PT . . . B 2 12.374 33.301 5.753 1 31.86 ? C5 4PT 1550 A 1 HETATM 27 O O5 4PT . . . B 2 13.736 32.965 5.654 1 35.48 ? O5 4PT 1550 A 1 HETATM 28 P P5 4PT . . . B 2 14.158 31.588 4.863 1 41.26 ? P5 4PT 1550 A 1 HETATM 29 O OP8 4PT . . . B 2 14.947 30.779 5.997 1 39.76 ? OP8 4PT 1550 A 1 HETATM 30 O OP7 4PT . . . B 2 15.304 31.952 3.862 1 42.07 ? OP7 4PT 1550 A 1 HETATM 31 O OP9 4PT . . . B 2 12.941 30.862 4.387 1 37.38 ? OP9 4PT 1550 A 1 HETATM 32 C C6 4PT . . . B 2 12.234 34.792 5.492 1 32.72 ? C6 4PT 1550 A 1 HETATM 33 O O6 4PT . . . B 2 12.483 35.013 4.09 1 34.96 ? O6 4PT 1550 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 117 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 702 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #