data_1W1W
#
_model_server_result.job_id            J-RFiD_-7eO-SxpG84_zBg 
_model_server_result.datetime_utc      '2025-02-17 05:40:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1w1w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":2224}' 
#
_entry.id    1W1W 
#
_exptl.entry_id    1W1W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1W1W 
_cell.length_a            138.465 
_cell.length_b            138.465 
_cell.length_c            284.074 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1W1W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
? tetrameric 4 author_defined_assembly 5 
? tetrameric 4 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,F,K,L 1 1 
A,E,I,J 2 1 
D,H,O,P 3 1 
C,G,M,N 4 1 
A,B,E,F,I,J,K,L 5 1 
C,D,G,H,M,N,O,P 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 L N N 
? 4 N N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 40 A SER 40 1_555 I MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc2 A OE1 GLN 151 A GLN 151 1_555 I MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc3 I MG MG . A MG 2001 1_555 J O3G AGS . A AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc4 I MG MG . A MG 2001 1_555 J O2B AGS . A AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc5 B OG SER 40 B SER 40 1_555 K MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc6 B OE1 GLN 151 B GLN 151 1_555 K MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc7 K MG MG . B MG 2001 1_555 L O2B AGS . B AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc8 K MG MG . B MG 2001 1_555 L O3G AGS . B AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
metalc ? metalc9 C OG SER 40 C SER 40 1_555 M MG MG . C MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc10 C OE1 GLN 151 C GLN 151 1_555 M MG MG . C MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc11 M MG MG . C MG 2001 1_555 N O2B AGS . C AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc12 M MG MG . C MG 2001 1_555 N O3G AGS . C AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc13 D OG SER 40 D SER 40 1_555 O MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc14 D OE1 GLN 151 D GLN 151 1_555 O MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc15 O MG MG . D MG 2001 1_555 P O3G AGS . D AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc16 O MG MG . D MG 2001 1_555 P O2B AGS . D AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     1W1W 
_atom_sites.fract_transf_matrix[1][1]    0.007222 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007222 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 MG A 1 2001 2001 MG MG . 
J 4 AGS A 1 2224 2224 AGS AGS . 
K 3 MG B 1 2001 2001 MG MG . 
L 4 AGS B 1 2224 2224 AGS AGS . 
M 3 MG C 1 2001 2001 MG MG . 
N 4 AGS C 1 2224 2224 AGS AGS . 
O 3 MG D 1 2001 2001 MG MG . 
P 4 AGS D 1 2224 2224 AGS AGS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . N 4 -87.566 5.564 24.584 1 38.55 ? PG AGS 2224 C 1 
HETATM 2 S S1G AGS . . . N 4 -86.481 6.182 25.909 1 38.71 ? S1G AGS 2224 C 1 
HETATM 3 O O2G AGS . . . N 4 -88.996 5.446 24.901 1 26.88 ? O2G AGS 2224 C 1 
HETATM 4 O O3G AGS . . . N 4 -86.964 4.261 24.099 1 44.58 ? O3G AGS 2224 C 1 
HETATM 5 P PB AGS . . . N 4 -86.561 6.963 22.236 1 43.14 ? PB AGS 2224 C 1 
HETATM 6 O O1B AGS . . . N 4 -85.98 8.274 22.605 1 44.5 ? O1B AGS 2224 C 1 
HETATM 7 O O2B AGS . . . N 4 -85.578 5.858 22.081 1 38.48 ? O2B AGS 2224 C 1 
HETATM 8 O O3B AGS . . . N 4 -87.656 6.61 23.342 1 37.38 ? O3B AGS 2224 C 1 
HETATM 9 P PA AGS . . . N 4 -86.974 6.367 19.452 1 52.86 ? PA AGS 2224 C 1 
HETATM 10 O O1A AGS . . . N 4 -85.637 6.561 18.842 1 47.41 ? O1A AGS 2224 C 1 
HETATM 11 O O2A AGS . . . N 4 -87.495 5.02 19.823 1 53.46 ? O2A AGS 2224 C 1 
HETATM 12 O O3A AGS . . . N 4 -87.152 7.261 20.841 1 48.27 ? O3A AGS 2224 C 1 
HETATM 13 O O5' AGS . . . N 4 -87.995 7.228 18.574 1 55.17 ? O5' AGS 2224 C 1 
HETATM 14 C C5' AGS . . . N 4 -89.237 6.675 18.2 1 60.87 ? C5' AGS 2224 C 1 
HETATM 15 C C4' AGS . . . N 4 -90.096 7.79 17.572 1 60.81 ? C4' AGS 2224 C 1 
HETATM 16 O O4' AGS . . . N 4 -89.518 8.224 16.389 1 56.52 ? O4' AGS 2224 C 1 
HETATM 17 C C3' AGS . . . N 4 -91.545 7.378 17.253 1 59.77 ? C3' AGS 2224 C 1 
HETATM 18 O O3' AGS . . . N 4 -92.41 7.943 18.224 1 63.02 ? O3' AGS 2224 C 1 
HETATM 19 C C2' AGS . . . N 4 -91.847 7.999 15.901 1 60.75 ? C2' AGS 2224 C 1 
HETATM 20 O O2' AGS . . . N 4 -92.785 9.099 15.93 1 63.07 ? O2' AGS 2224 C 1 
HETATM 21 C C1' AGS . . . N 4 -90.451 8.392 15.369 1 61.99 ? C1' AGS 2224 C 1 
HETATM 22 N N9 AGS . . . N 4 -90.093 7.551 14.193 1 66.05 ? N9 AGS 2224 C 1 
HETATM 23 C C8 AGS . . . N 4 -89.689 6.227 14.072 1 69.38 ? C8 AGS 2224 C 1 
HETATM 24 N N7 AGS . . . N 4 -89.44 5.748 12.861 1 71.55 ? N7 AGS 2224 C 1 
HETATM 25 C C5 AGS . . . N 4 -89.712 6.858 12.1 1 70.56 ? C5 AGS 2224 C 1 
HETATM 26 C C6 AGS . . . N 4 -89.674 7.112 10.694 1 71.16 ? C6 AGS 2224 C 1 
HETATM 27 N N6 AGS . . . N 4 -89.247 6.084 9.768 1 74.24 ? N6 AGS 2224 C 1 
HETATM 28 N N1 AGS . . . N 4 -90.053 8.342 10.215 1 69.35 ? N1 AGS 2224 C 1 
HETATM 29 C C2 AGS . . . N 4 -90.454 9.342 11.087 1 71.33 ? C2 AGS 2224 C 1 
HETATM 30 N N3 AGS . . . N 4 -90.485 9.252 12.45 1 71 ? N3 AGS 2224 C 1 
HETATM 31 C C4 AGS . . . N 4 -90.117 7.979 12.897 1 68.45 ? C4 AGS 2224 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#