data_1W1W
#
_model_server_result.job_id            XBdhoD_iuWm3ROoRURZfbQ 
_model_server_result.datetime_utc      '2024-11-23 05:37:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1w1w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":2224}' 
#
_entry.id    1W1W 
#
_exptl.entry_id    1W1W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1W1W 
_cell.length_a            138.465 
_cell.length_b            138.465 
_cell.length_c            284.074 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1W1W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
? tetrameric 4 author_defined_assembly 5 
? tetrameric 4 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,F,K,L 1 1 
A,E,I,J 2 1 
D,H,O,P 3 1 
C,G,M,N 4 1 
A,B,E,F,I,J,K,L 5 1 
C,D,G,H,M,N,O,P 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 L N N 
? 4 N N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 40 A SER 40 1_555 I MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc2 A OE1 GLN 151 A GLN 151 1_555 I MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc3 I MG MG . A MG 2001 1_555 J O3G AGS . A AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc4 I MG MG . A MG 2001 1_555 J O2B AGS . A AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc5 B OG SER 40 B SER 40 1_555 K MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc6 B OE1 GLN 151 B GLN 151 1_555 K MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc7 K MG MG . B MG 2001 1_555 L O2B AGS . B AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc8 K MG MG . B MG 2001 1_555 L O3G AGS . B AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
metalc ? metalc9 C OG SER 40 C SER 40 1_555 M MG MG . C MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc10 C OE1 GLN 151 C GLN 151 1_555 M MG MG . C MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc11 M MG MG . C MG 2001 1_555 N O2B AGS . C AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc12 M MG MG . C MG 2001 1_555 N O3G AGS . C AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc13 D OG SER 40 D SER 40 1_555 O MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc14 D OE1 GLN 151 D GLN 151 1_555 O MG MG . D MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc15 O MG MG . D MG 2001 1_555 P O3G AGS . D AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc16 O MG MG . D MG 2001 1_555 P O2B AGS . D AGS 2224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     1W1W 
_atom_sites.fract_transf_matrix[1][1]    0.007222 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007222 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 MG A 1 2001 2001 MG MG . 
J 4 AGS A 1 2224 2224 AGS AGS . 
K 3 MG B 1 2001 2001 MG MG . 
L 4 AGS B 1 2224 2224 AGS AGS . 
M 3 MG C 1 2001 2001 MG MG . 
N 4 AGS C 1 2224 2224 AGS AGS . 
O 3 MG D 1 2001 2001 MG MG . 
P 4 AGS D 1 2224 2224 AGS AGS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . P 4 -84.981 -7.337 40.513 1 36.83 ? PG AGS 2224 D 1 
HETATM 2 S S1G AGS . . . P 4 -85.67 -5.691 40.825 1 42.42 ? S1G AGS 2224 D 1 
HETATM 3 O O2G AGS . . . P 4 -83.554 -7.342 40.141 1 24.07 ? O2G AGS 2224 D 1 
HETATM 4 O O3G AGS . . . P 4 -85.869 -8.039 39.527 1 40.33 ? O3G AGS 2224 D 1 
HETATM 5 P PB AGS . . . P 4 -86.09 -9.029 42.569 1 41.15 ? PB AGS 2224 D 1 
HETATM 6 O O1B AGS . . . P 4 -86.277 -8.367 43.877 1 48.56 ? O1B AGS 2224 D 1 
HETATM 7 O O2B AGS . . . P 4 -87.313 -9.113 41.731 1 34.87 ? O2B AGS 2224 D 1 
HETATM 8 O O3B AGS . . . P 4 -84.935 -8.232 41.844 1 39.51 ? O3B AGS 2224 D 1 
HETATM 9 P PA AGS . . . P 4 -86.351 -11.895 42.602 1 45.39 ? PA AGS 2224 D 1 
HETATM 10 O O1A AGS . . . P 4 -87.68 -12.07 43.233 1 48.06 ? O1A AGS 2224 D 1 
HETATM 11 O O2A AGS . . . P 4 -86.168 -11.998 41.128 1 51.41 ? O2A AGS 2224 D 1 
HETATM 12 O O3A AGS . . . P 4 -85.677 -10.44 43.018 1 38.91 ? O3A AGS 2224 D 1 
HETATM 13 O O5' AGS . . . P 4 -85.323 -12.788 43.443 1 42.91 ? O5' AGS 2224 D 1 
HETATM 14 C C5' AGS . . . P 4 -84.24 -13.423 42.828 1 49.51 ? C5' AGS 2224 D 1 
HETATM 15 C C4' AGS . . . P 4 -83.426 -14.07 43.947 1 55.77 ? C4' AGS 2224 D 1 
HETATM 16 O O4' AGS . . . P 4 -84.176 -15.046 44.591 1 58.1 ? O4' AGS 2224 D 1 
HETATM 17 C C3' AGS . . . P 4 -82.114 -14.728 43.505 1 58.97 ? C3' AGS 2224 D 1 
HETATM 18 O O3' AGS . . . P 4 -81.04 -13.876 43.868 1 63.46 ? O3' AGS 2224 D 1 
HETATM 19 C C2' AGS . . . P 4 -82.025 -16.026 44.306 1 58.31 ? C2' AGS 2224 D 1 
HETATM 20 O O2' AGS . . . P 4 -80.926 -16.074 45.238 1 62.39 ? O2' AGS 2224 D 1 
HETATM 21 C C1' AGS . . . P 4 -83.399 -16.125 44.993 1 58.65 ? C1' AGS 2224 D 1 
HETATM 22 N N9 AGS . . . P 4 -84.077 -17.397 44.649 1 58.27 ? N9 AGS 2224 D 1 
HETATM 23 C C8 AGS . . . P 4 -84.73 -17.833 43.507 1 58.84 ? C8 AGS 2224 D 1 
HETATM 24 N N7 AGS . . . P 4 -85.258 -19.053 43.509 1 59.88 ? N7 AGS 2224 D 1 
HETATM 25 C C5 AGS . . . P 4 -84.911 -19.47 44.773 1 59.25 ? C5 AGS 2224 D 1 
HETATM 26 C C6 AGS . . . P 4 -85.129 -20.681 45.503 1 58.02 ? C6 AGS 2224 D 1 
HETATM 27 N N6 AGS . . . P 4 -85.895 -21.775 44.935 1 60.71 ? N6 AGS 2224 D 1 
HETATM 28 N N1 AGS . . . P 4 -84.607 -20.81 46.762 1 56.71 ? N1 AGS 2224 D 1 
HETATM 29 C C2 AGS . . . P 4 -83.903 -19.768 47.347 1 59 ? C2 AGS 2224 D 1 
HETATM 30 N N3 AGS . . . P 4 -83.666 -18.551 46.788 1 57.92 ? N3 AGS 2224 D 1 
HETATM 31 C C4 AGS . . . P 4 -84.181 -18.466 45.491 1 58.01 ? C4 AGS 2224 D 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#