data_1W2A
#
_model_server_result.job_id            WvBW-LK64RCr7Jb3tMjXow 
_model_server_result.datetime_utc      '2024-11-25 13:36:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1w2a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1300}' 
#
_entry.id    1W2A 
#
_exptl.entry_id    1W2A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1W2A 
_cell.length_a            137.8 
_cell.length_b            137.8 
_cell.length_c            48.6 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1W2A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 203 X HIS 183 1_555 D FE FE . X FE 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc2 A OD2 ASP 205 X ASP 185 1_555 D FE FE . X FE 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc3 A NE2 HIS 263 X HIS 243 1_555 D FE FE . X FE 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc4 C O2 EDO . X EDO 1301 1_555 D FE FE . X FE 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? 
metalc ? metalc5 D FE FE . X FE 1302 1_555 E O HOH . X HOH 2063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc6 D FE FE . X FE 1302 1_555 E O HOH . X HOH 2082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     1W2A 
_atom_sites.fract_transf_matrix[1][1]    0.007257 
_atom_sites.fract_transf_matrix[1][2]    0.00419 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00838 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020576 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO X 1 1300 1300 EDO EDO . 
C 2 EDO X 1 1301 1301 EDO EDO . 
D 3 FE X 1 1302 1302 FE FE . 
E 4 HOH X 1 2001 2001 HOH HOH . 
E 4 HOH X 2 2002 2002 HOH HOH . 
E 4 HOH X 3 2003 2003 HOH HOH . 
E 4 HOH X 4 2004 2004 HOH HOH . 
E 4 HOH X 5 2005 2005 HOH HOH . 
E 4 HOH X 6 2006 2006 HOH HOH . 
E 4 HOH X 7 2007 2007 HOH HOH . 
E 4 HOH X 8 2008 2008 HOH HOH . 
E 4 HOH X 9 2009 2009 HOH HOH . 
E 4 HOH X 10 2010 2010 HOH HOH . 
E 4 HOH X 11 2011 2011 HOH HOH . 
E 4 HOH X 12 2012 2012 HOH HOH . 
E 4 HOH X 13 2013 2013 HOH HOH . 
E 4 HOH X 14 2014 2014 HOH HOH . 
E 4 HOH X 15 2015 2015 HOH HOH . 
E 4 HOH X 16 2016 2016 HOH HOH . 
E 4 HOH X 17 2017 2017 HOH HOH . 
E 4 HOH X 18 2018 2018 HOH HOH . 
E 4 HOH X 19 2019 2019 HOH HOH . 
E 4 HOH X 20 2020 2020 HOH HOH . 
E 4 HOH X 21 2021 2021 HOH HOH . 
E 4 HOH X 22 2022 2022 HOH HOH . 
E 4 HOH X 23 2023 2023 HOH HOH . 
E 4 HOH X 24 2024 2024 HOH HOH . 
E 4 HOH X 25 2025 2025 HOH HOH . 
E 4 HOH X 26 2026 2026 HOH HOH . 
E 4 HOH X 27 2027 2027 HOH HOH . 
E 4 HOH X 28 2028 2028 HOH HOH . 
E 4 HOH X 29 2029 2029 HOH HOH . 
E 4 HOH X 30 2030 2030 HOH HOH . 
E 4 HOH X 31 2031 2031 HOH HOH . 
E 4 HOH X 32 2032 2032 HOH HOH . 
E 4 HOH X 33 2033 2033 HOH HOH . 
E 4 HOH X 34 2034 2034 HOH HOH . 
E 4 HOH X 35 2035 2035 HOH HOH . 
E 4 HOH X 36 2036 2036 HOH HOH . 
E 4 HOH X 37 2037 2037 HOH HOH . 
E 4 HOH X 38 2038 2038 HOH HOH . 
E 4 HOH X 39 2039 2039 HOH HOH . 
E 4 HOH X 40 2040 2040 HOH HOH . 
E 4 HOH X 41 2041 2041 HOH HOH . 
E 4 HOH X 42 2042 2042 HOH HOH . 
E 4 HOH X 43 2043 2043 HOH HOH . 
E 4 HOH X 44 2044 2044 HOH HOH . 
E 4 HOH X 45 2045 2045 HOH HOH . 
E 4 HOH X 46 2046 2046 HOH HOH . 
E 4 HOH X 47 2047 2047 HOH HOH . 
E 4 HOH X 48 2048 2048 HOH HOH . 
E 4 HOH X 49 2049 2049 HOH HOH . 
E 4 HOH X 50 2050 2050 HOH HOH . 
E 4 HOH X 51 2051 2051 HOH HOH . 
E 4 HOH X 52 2052 2052 HOH HOH . 
E 4 HOH X 53 2053 2053 HOH HOH . 
E 4 HOH X 54 2054 2054 HOH HOH . 
E 4 HOH X 55 2055 2055 HOH HOH . 
E 4 HOH X 56 2056 2056 HOH HOH . 
E 4 HOH X 57 2057 2057 HOH HOH . 
E 4 HOH X 58 2058 2058 HOH HOH . 
E 4 HOH X 59 2059 2059 HOH HOH . 
E 4 HOH X 60 2060 2060 HOH HOH . 
E 4 HOH X 61 2061 2061 HOH HOH . 
E 4 HOH X 62 2062 2062 HOH HOH . 
E 4 HOH X 63 2063 2063 HOH HOH . 
E 4 HOH X 64 2064 2064 HOH HOH . 
E 4 HOH X 65 2065 2065 HOH HOH . 
E 4 HOH X 66 2066 2066 HOH HOH . 
E 4 HOH X 67 2067 2067 HOH HOH . 
E 4 HOH X 68 2068 2068 HOH HOH . 
E 4 HOH X 69 2069 2069 HOH HOH . 
E 4 HOH X 70 2070 2070 HOH HOH . 
E 4 HOH X 71 2071 2071 HOH HOH . 
E 4 HOH X 72 2072 2072 HOH HOH . 
E 4 HOH X 73 2073 2073 HOH HOH . 
E 4 HOH X 74 2074 2074 HOH HOH . 
E 4 HOH X 75 2075 2075 HOH HOH . 
E 4 HOH X 76 2076 2076 HOH HOH . 
E 4 HOH X 77 2077 2077 HOH HOH . 
E 4 HOH X 78 2078 2078 HOH HOH . 
E 4 HOH X 79 2079 2079 HOH HOH . 
E 4 HOH X 80 2080 2080 HOH HOH . 
E 4 HOH X 81 2081 2081 HOH HOH . 
E 4 HOH X 82 2082 2082 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . B 2 73.962 9.773 26.759 1 69.67 ? C1 EDO 1300 X 1 
HETATM 2 O O1 EDO . . . B 2 73.405 8.777 25.935 1 67.62 ? O1 EDO 1300 X 1 
HETATM 3 C C2 EDO . . . B 2 73.101 11.01 26.629 1 70.87 ? C2 EDO 1300 X 1 
HETATM 4 O O2 EDO . . . B 2 72.154 11.088 27.691 1 70.95 ? O2 EDO 1300 X 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#