data_1W2H # _model_server_result.job_id 0wh9Bi1N9_QNzFDHXwtWfg _model_server_result.datetime_utc '2024-11-28 15:14:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1w2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1209}' # _entry.id 1W2H # _exptl.entry_id 1W2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1W2H _cell.length_a 64.521 _cell.length_b 64.521 _cell.length_c 195.366 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id ATM _chem_comp.mon_nstd_flag n _chem_comp.name "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P OP1 ATM doub 76 n n P OP2 ATM sing 77 n n P OP3 ATM sing 78 n n P O5' ATM sing 79 n n OP2 HOP2 ATM sing 80 n n OP3 HOP3 ATM sing 81 n n O5' C5' ATM sing 82 n n C5' C4' ATM sing 83 n n C5' H5' ATM sing 84 n n C5' "H5''" ATM sing 85 n n C4' O4' ATM sing 86 n n C4' C3' ATM sing 87 n n C4' H4' ATM sing 88 n n O4' C1' ATM sing 89 n n C3' N3' ATM sing 90 n n C3' C2' ATM sing 91 n n C3' H3' ATM sing 92 n n N3' N4' ATM doub 93 n n N4' N5' ATM doub 94 n n C2' C1' ATM sing 95 n n C2' H2' ATM sing 96 n n C2' "H2''" ATM sing 97 n n C1' N1 ATM sing 98 n n C1' H1' ATM sing 99 n n N1 C2 ATM sing 100 n n N1 C6 ATM sing 101 n n C2 O2 ATM doub 102 n n C2 N3 ATM sing 103 n n N3 C4 ATM sing 104 n n N3 HN3 ATM sing 105 n n C4 O4 ATM doub 106 n n C4 C5 ATM sing 107 n n C5 C5A ATM sing 108 n n C5 C6 ATM doub 109 n n C5A H51 ATM sing 110 n n C5A H52 ATM sing 111 n n C5A H53 ATM sing 112 n n C6 H6 ATM sing 113 n n # _atom_sites.entry_id 1W2H _atom_sites.fract_transf_matrix[1][1] 0.015499 _atom_sites.fract_transf_matrix[1][2] 0.008948 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATM A 1 1209 1209 ATM ATM . D 2 ATM A 1 1210 1210 ATM ATM . E 3 ACT A 1 1211 1211 ACT ACT . F 3 ACT A 1 1212 1212 ACT ACT . G 3 ACT B 1 1209 1209 ACT ACT . H 2 ATM B 1 1210 1210 ATM ATM . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2012 2012 HOH HOH . I 4 HOH A 13 2013 2013 HOH HOH . I 4 HOH A 14 2014 2014 HOH HOH . I 4 HOH A 15 2015 2015 HOH HOH . I 4 HOH A 16 2016 2016 HOH HOH . I 4 HOH A 17 2017 2017 HOH HOH . I 4 HOH A 18 2018 2018 HOH HOH . I 4 HOH A 19 2019 2019 HOH HOH . I 4 HOH A 20 2020 2020 HOH HOH . I 4 HOH A 21 2021 2021 HOH HOH . I 4 HOH A 22 2022 2022 HOH HOH . I 4 HOH A 23 2023 2023 HOH HOH . I 4 HOH A 24 2024 2024 HOH HOH . I 4 HOH A 25 2025 2025 HOH HOH . I 4 HOH A 26 2026 2026 HOH HOH . I 4 HOH A 27 2027 2027 HOH HOH . I 4 HOH A 28 2028 2028 HOH HOH . I 4 HOH A 29 2029 2029 HOH HOH . I 4 HOH A 30 2030 2030 HOH HOH . I 4 HOH A 31 2031 2031 HOH HOH . I 4 HOH A 32 2032 2032 HOH HOH . I 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH A 34 2034 2034 HOH HOH . I 4 HOH A 35 2035 2035 HOH HOH . I 4 HOH A 36 2036 2036 HOH HOH . I 4 HOH A 37 2037 2037 HOH HOH . I 4 HOH A 38 2038 2038 HOH HOH . I 4 HOH A 39 2039 2039 HOH HOH . I 4 HOH A 40 2040 2040 HOH HOH . I 4 HOH A 41 2041 2041 HOH HOH . I 4 HOH A 42 2042 2042 HOH HOH . I 4 HOH A 43 2043 2043 HOH HOH . I 4 HOH A 44 2044 2044 HOH HOH . I 4 HOH A 45 2045 2045 HOH HOH . I 4 HOH A 46 2046 2046 HOH HOH . I 4 HOH A 47 2047 2047 HOH HOH . I 4 HOH A 48 2048 2048 HOH HOH . I 4 HOH A 49 2049 2049 HOH HOH . I 4 HOH A 50 2050 2050 HOH HOH . I 4 HOH A 51 2051 2051 HOH HOH . I 4 HOH A 52 2052 2052 HOH HOH . I 4 HOH A 53 2053 2053 HOH HOH . I 4 HOH A 54 2054 2054 HOH HOH . I 4 HOH A 55 2055 2055 HOH HOH . I 4 HOH A 56 2056 2056 HOH HOH . I 4 HOH A 57 2057 2057 HOH HOH . I 4 HOH A 58 2058 2058 HOH HOH . I 4 HOH A 59 2059 2059 HOH HOH . I 4 HOH A 60 2060 2060 HOH HOH . I 4 HOH A 61 2061 2061 HOH HOH . I 4 HOH A 62 2062 2062 HOH HOH . I 4 HOH A 63 2063 2063 HOH HOH . I 4 HOH A 64 2064 2064 HOH HOH . I 4 HOH A 65 2065 2065 HOH HOH . I 4 HOH A 66 2066 2066 HOH HOH . I 4 HOH A 67 2067 2067 HOH HOH . I 4 HOH A 68 2068 2068 HOH HOH . I 4 HOH A 69 2069 2069 HOH HOH . I 4 HOH A 70 2070 2070 HOH HOH . I 4 HOH A 71 2071 2071 HOH HOH . I 4 HOH A 72 2072 2072 HOH HOH . I 4 HOH A 73 2073 2073 HOH HOH . I 4 HOH A 74 2074 2074 HOH HOH . I 4 HOH A 75 2075 2075 HOH HOH . I 4 HOH A 76 2076 2076 HOH HOH . I 4 HOH A 77 2077 2077 HOH HOH . I 4 HOH A 78 2078 2078 HOH HOH . I 4 HOH A 79 2079 2079 HOH HOH . I 4 HOH A 80 2080 2080 HOH HOH . I 4 HOH A 81 2081 2081 HOH HOH . I 4 HOH A 82 2082 2082 HOH HOH . I 4 HOH A 83 2083 2083 HOH HOH . I 4 HOH A 84 2084 2084 HOH HOH . I 4 HOH A 85 2085 2085 HOH HOH . I 4 HOH A 86 2086 2086 HOH HOH . I 4 HOH A 87 2087 2087 HOH HOH . I 4 HOH A 88 2088 2088 HOH HOH . I 4 HOH A 89 2089 2089 HOH HOH . I 4 HOH A 90 2090 2090 HOH HOH . I 4 HOH A 91 2091 2091 HOH HOH . I 4 HOH A 92 2092 2092 HOH HOH . I 4 HOH A 93 2093 2093 HOH HOH . I 4 HOH A 94 2094 2094 HOH HOH . I 4 HOH A 95 2095 2095 HOH HOH . I 4 HOH A 96 2096 2096 HOH HOH . I 4 HOH A 97 2097 2097 HOH HOH . I 4 HOH A 98 2098 2098 HOH HOH . I 4 HOH A 99 2099 2099 HOH HOH . I 4 HOH A 100 2100 2100 HOH HOH . I 4 HOH A 101 2101 2101 HOH HOH . I 4 HOH A 102 2102 2102 HOH HOH . I 4 HOH A 103 2103 2103 HOH HOH . I 4 HOH A 104 2104 2104 HOH HOH . I 4 HOH A 105 2105 2105 HOH HOH . I 4 HOH A 106 2106 2106 HOH HOH . I 4 HOH A 107 2107 2107 HOH HOH . I 4 HOH A 108 2108 2108 HOH HOH . I 4 HOH A 109 2109 2109 HOH HOH . I 4 HOH A 110 2110 2110 HOH HOH . I 4 HOH A 111 2111 2111 HOH HOH . I 4 HOH A 112 2112 2112 HOH HOH . I 4 HOH A 113 2113 2113 HOH HOH . I 4 HOH A 114 2114 2114 HOH HOH . I 4 HOH A 115 2115 2115 HOH HOH . I 4 HOH A 116 2116 2116 HOH HOH . I 4 HOH A 117 2117 2117 HOH HOH . I 4 HOH A 118 2118 2118 HOH HOH . I 4 HOH A 119 2119 2119 HOH HOH . I 4 HOH A 120 2120 2120 HOH HOH . I 4 HOH A 121 2121 2121 HOH HOH . I 4 HOH A 122 2122 2122 HOH HOH . I 4 HOH A 123 2123 2123 HOH HOH . I 4 HOH A 124 2124 2124 HOH HOH . I 4 HOH A 125 2125 2125 HOH HOH . I 4 HOH A 126 2126 2126 HOH HOH . I 4 HOH A 127 2127 2127 HOH HOH . I 4 HOH A 128 2128 2128 HOH HOH . I 4 HOH A 129 2129 2129 HOH HOH . J 4 HOH B 1 2001 2001 HOH HOH . J 4 HOH B 2 2002 2002 HOH HOH . J 4 HOH B 3 2003 2003 HOH HOH . J 4 HOH B 4 2004 2004 HOH HOH . J 4 HOH B 5 2005 2005 HOH HOH . J 4 HOH B 6 2006 2006 HOH HOH . J 4 HOH B 7 2007 2007 HOH HOH . J 4 HOH B 8 2008 2008 HOH HOH . J 4 HOH B 9 2009 2009 HOH HOH . J 4 HOH B 10 2010 2010 HOH HOH . J 4 HOH B 11 2011 2011 HOH HOH . J 4 HOH B 12 2012 2012 HOH HOH . J 4 HOH B 13 2013 2013 HOH HOH . J 4 HOH B 14 2014 2014 HOH HOH . J 4 HOH B 15 2015 2015 HOH HOH . J 4 HOH B 16 2016 2016 HOH HOH . J 4 HOH B 17 2017 2017 HOH HOH . J 4 HOH B 18 2018 2018 HOH HOH . J 4 HOH B 19 2019 2019 HOH HOH . J 4 HOH B 20 2020 2020 HOH HOH . J 4 HOH B 21 2021 2021 HOH HOH . J 4 HOH B 22 2022 2022 HOH HOH . J 4 HOH B 23 2023 2023 HOH HOH . J 4 HOH B 24 2024 2024 HOH HOH . J 4 HOH B 25 2025 2025 HOH HOH . J 4 HOH B 26 2026 2026 HOH HOH . J 4 HOH B 27 2027 2027 HOH HOH . J 4 HOH B 28 2028 2028 HOH HOH . J 4 HOH B 29 2029 2029 HOH HOH . J 4 HOH B 30 2030 2030 HOH HOH . J 4 HOH B 31 2031 2031 HOH HOH . J 4 HOH B 32 2032 2032 HOH HOH . J 4 HOH B 33 2033 2033 HOH HOH . J 4 HOH B 34 2034 2034 HOH HOH . J 4 HOH B 35 2035 2035 HOH HOH . J 4 HOH B 36 2036 2036 HOH HOH . J 4 HOH B 37 2037 2037 HOH HOH . J 4 HOH B 38 2038 2038 HOH HOH . J 4 HOH B 39 2039 2039 HOH HOH . J 4 HOH B 40 2040 2040 HOH HOH . J 4 HOH B 41 2041 2041 HOH HOH . J 4 HOH B 42 2042 2042 HOH HOH . J 4 HOH B 43 2043 2043 HOH HOH . J 4 HOH B 44 2044 2044 HOH HOH . J 4 HOH B 45 2045 2045 HOH HOH . J 4 HOH B 46 2046 2046 HOH HOH . J 4 HOH B 47 2047 2047 HOH HOH . J 4 HOH B 48 2048 2048 HOH HOH . J 4 HOH B 49 2049 2049 HOH HOH . J 4 HOH B 50 2050 2050 HOH HOH . J 4 HOH B 51 2051 2051 HOH HOH . J 4 HOH B 52 2052 2052 HOH HOH . J 4 HOH B 53 2053 2053 HOH HOH . J 4 HOH B 54 2054 2054 HOH HOH . J 4 HOH B 55 2055 2055 HOH HOH . J 4 HOH B 56 2056 2056 HOH HOH . J 4 HOH B 57 2057 2057 HOH HOH . J 4 HOH B 58 2058 2058 HOH HOH . J 4 HOH B 59 2059 2059 HOH HOH . J 4 HOH B 60 2060 2060 HOH HOH . J 4 HOH B 61 2061 2061 HOH HOH . J 4 HOH B 62 2062 2062 HOH HOH . J 4 HOH B 63 2063 2063 HOH HOH . J 4 HOH B 64 2064 2064 HOH HOH . J 4 HOH B 65 2065 2065 HOH HOH . J 4 HOH B 66 2066 2066 HOH HOH . J 4 HOH B 67 2067 2067 HOH HOH . J 4 HOH B 68 2068 2068 HOH HOH . J 4 HOH B 69 2069 2069 HOH HOH . J 4 HOH B 70 2070 2070 HOH HOH . J 4 HOH B 71 2071 2071 HOH HOH . J 4 HOH B 72 2072 2072 HOH HOH . J 4 HOH B 73 2073 2073 HOH HOH . J 4 HOH B 74 2074 2074 HOH HOH . J 4 HOH B 75 2075 2075 HOH HOH . J 4 HOH B 76 2076 2076 HOH HOH . J 4 HOH B 77 2077 2077 HOH HOH . J 4 HOH B 78 2078 2078 HOH HOH . J 4 HOH B 79 2079 2079 HOH HOH . J 4 HOH B 80 2080 2080 HOH HOH . J 4 HOH B 81 2081 2081 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P ATM . . . C 2 31.923 26.812 90.01 1 33.37 ? P ATM 1209 A 1 HETATM 2 O OP1 ATM . . . C 2 32.92 26.207 90.897 1 34.38 ? OP1 ATM 1209 A 1 HETATM 3 O OP2 ATM . . . C 2 32.139 28.208 89.541 1 35.05 ? OP2 ATM 1209 A 1 HETATM 4 O OP3 ATM . . . C 2 30.47 26.687 90.649 1 32.7 ? OP3 ATM 1209 A 1 HETATM 5 O O5' ATM . . . C 2 31.632 25.852 88.757 1 32.37 ? O5' ATM 1209 A 1 HETATM 6 C C5' ATM . . . C 2 30.697 26.322 87.734 1 27.7 ? C5' ATM 1209 A 1 HETATM 7 C C4' ATM . . . C 2 30.449 25.215 86.677 1 28.25 ? C4' ATM 1209 A 1 HETATM 8 O O4' ATM . . . C 2 31.343 24.844 85.623 1 25.24 ? O4' ATM 1209 A 1 HETATM 9 C C3' ATM . . . C 2 30.146 23.983 87.447 1 29.93 ? C3' ATM 1209 A 1 HETATM 10 N N3' ATM . . . C 2 28.834 23.438 87.004 1 36.48 ? N3' ATM 1209 A 1 HETATM 11 N N4' ATM . . . C 2 27.873 23.949 87.6 1 43.14 ? N4' ATM 1209 A 1 HETATM 12 N N5' ATM . . . C 2 26.802 24.207 87.942 1 46.45 ? N5' ATM 1209 A 1 HETATM 13 C C2' ATM . . . C 2 31.385 23.058 87.201 1 25.71 ? C2' ATM 1209 A 1 HETATM 14 C C1' ATM . . . C 2 31.912 23.589 85.857 1 22.3 ? C1' ATM 1209 A 1 HETATM 15 N N1 ATM . . . C 2 33.375 23.67 85.556 1 20.68 ? N1 ATM 1209 A 1 HETATM 16 C C2 ATM . . . C 2 33.778 22.841 84.454 1 18.47 ? C2 ATM 1209 A 1 HETATM 17 O O2 ATM . . . C 2 32.983 22.14 83.82 1 20.73 ? O2 ATM 1209 A 1 HETATM 18 N N3 ATM . . . C 2 35.11 22.889 84.163 1 18.36 ? N3 ATM 1209 A 1 HETATM 19 C C4 ATM . . . C 2 36.009 23.686 84.887 1 15.03 ? C4 ATM 1209 A 1 HETATM 20 O O4 ATM . . . C 2 37.303 23.653 84.516 1 14.78 ? O4 ATM 1209 A 1 HETATM 21 C C5 ATM . . . C 2 35.547 24.535 86.028 1 16.64 ? C5 ATM 1209 A 1 HETATM 22 C C5A ATM . . . C 2 36.542 25.37 86.781 1 14.73 ? C5A ATM 1209 A 1 HETATM 23 C C6 ATM . . . C 2 34.18 24.49 86.33 1 17.99 ? C6 ATM 1209 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #