data_1W2O # _model_server_result.job_id RBK_gJSxhF4y4-Rgi2bcGA _model_server_result.datetime_utc '2024-11-25 11:34:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1w2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1300}' # _entry.id 1W2O # _exptl.entry_id 1W2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.382 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEACETOXYCEPHALOSPORIN-C _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1W2O _cell.length_a 139.1 _cell.length_b 139.1 _cell.length_c 48.6 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 203 A HIS 183 1_555 B FE FE . A FE 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc2 A OD2 ASP 205 A ASP 185 1_555 B FE FE . A FE 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A OD1 ASP 205 A ASP 185 1_555 B FE FE . A FE 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc4 A NE2 HIS 263 A HIS 243 1_555 B FE FE . A FE 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'C14 H19 N3 O6 S' _chem_comp.formula_weight 357.382 _chem_comp.id P1C _chem_comp.mon_nstd_flag . _chem_comp.name DEACETOXYCEPHALOSPORIN-C _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 P1C sing 237 n n C1 O19 P1C doub 238 n n C1 O20 P1C sing 239 n n C2 C3 P1C sing 240 n n C2 N14 P1C sing 241 n n C2 H2 P1C sing 242 n n C3 C4 P1C sing 243 n n C3 H3C1 P1C sing 244 n n C3 H3C2 P1C sing 245 n n C4 C7 P1C sing 246 n n C4 H4C1 P1C sing 247 n n C4 H4C2 P1C sing 248 n n C7 C10 P1C sing 249 n n C7 H7C1 P1C sing 250 n n C7 H7C2 P1C sing 251 n n C10 N11 P1C sing 252 n n C10 O15 P1C doub 253 n n N11 C12 P1C sing 254 n n N11 H11 P1C sing 255 n n C12 C13 P1C sing 256 n n C12 C16 P1C sing 257 n n C12 H12 P1C sing 258 n n C13 O18 P1C doub 259 n n C13 N29 P1C sing 260 n n N14 H141 P1C sing 261 n n N14 H142 P1C sing 262 n n C16 N29 P1C sing 263 n n C16 S P1C sing 264 n n C16 H16 P1C sing 265 n n O20 H20 P1C sing 266 n n N29 C30 P1C sing 267 n n C30 C31 P1C sing 268 n n C30 C32 P1C doub 269 n n C31 O42 P1C sing 270 n n C31 O43 P1C doub 271 n n C32 C33 P1C sing 272 n n C32 C37 P1C sing 273 n n C33 H331 P1C sing 274 n n C33 H332 P1C sing 275 n n C33 H333 P1C sing 276 n n C37 S P1C sing 277 n n C37 H371 P1C sing 278 n n C37 H372 P1C sing 279 n n O42 H421 P1C sing 280 n n # _atom_sites.entry_id 1W2O _atom_sites.fract_transf_matrix[1][1] 0.007189 _atom_sites.fract_transf_matrix[1][2] 0.004151 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 1299 1299 FE FE . C 3 P1C A 1 1300 1300 P1C P1C . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P1C . . . C 3 67.629 3.848 31.124 1 92.64 ? C1 P1C 1300 A 1 HETATM 2 C C2 P1C . . . C 3 68.577 4.553 30.18 1 92.68 ? C2 P1C 1300 A 1 HETATM 3 C C3 P1C . . . C 3 68.6 6.065 30.442 1 93.01 ? C3 P1C 1300 A 1 HETATM 4 C C4 P1C . . . C 3 69.606 6.466 31.525 1 93.54 ? C4 P1C 1300 A 1 HETATM 5 C C7 P1C . . . C 3 69.221 7.762 32.25 1 94.69 ? C7 P1C 1300 A 1 HETATM 6 C C10 P1C . . . C 3 70.402 8.712 32.26 1 95.79 ? C10 P1C 1300 A 1 HETATM 7 N N11 P1C . . . C 3 70.345 9.741 31.408 1 97.22 ? N11 P1C 1300 A 1 HETATM 8 C C12 P1C . . . C 3 71.53 9.908 30.555 1 98.48 ? C12 P1C 1300 A 1 HETATM 9 C C13 P1C . . . C 3 72.291 11.053 30.001 1 98.23 ? C13 P1C 1300 A 1 HETATM 10 N N14 P1C . . . C 3 69.914 3.994 30.311 1 92.32 ? N14 P1C 1300 A 1 HETATM 11 O O15 P1C . . . C 3 71.37 8.486 32.98 1 95.64 ? O15 P1C 1300 A 1 HETATM 12 C C16 P1C . . . C 3 72.088 9.087 29.38 1 99.4 ? C16 P1C 1300 A 1 HETATM 13 O O18 P1C . . . C 3 72.374 12.233 30.265 1 97.58 ? O18 P1C 1300 A 1 HETATM 14 O O19 P1C . . . C 3 67.425 4.27 32.256 1 92.09 ? O19 P1C 1300 A 1 HETATM 15 O O20 P1C . . . C 3 66.995 2.74 30.73 1 92.57 ? O20 P1C 1300 A 1 HETATM 16 N N29 P1C . . . C 3 72.915 10.285 28.992 1 99.08 ? N29 P1C 1300 A 1 HETATM 17 C C30 P1C . . . C 3 72.812 10.884 27.702 1 99.23 ? C30 P1C 1300 A 1 HETATM 18 C C31 P1C . . . C 3 73.924 11.554 27.327 1 98.66 ? C31 P1C 1300 A 1 HETATM 19 C C32 P1C . . . C 3 71.698 10.782 26.934 1 99.79 ? C32 P1C 1300 A 1 HETATM 20 C C33 P1C . . . C 3 71.603 11.419 25.57 1 99.39 ? C33 P1C 1300 A 1 HETATM 21 C C37 P1C . . . C 3 70.463 10.028 27.398 1 99.86 ? C37 P1C 1300 A 1 HETATM 22 O O42 P1C . . . C 3 74.058 12.135 26.262 1 98.04 ? O42 P1C 1300 A 1 HETATM 23 O O43 P1C . . . C 3 74.966 11.598 28.15 1 98.07 ? O43 P1C 1300 A 1 HETATM 24 S S P1C . . . C 3 70.858 8.441 28.196 1 101.5 ? S P1C 1300 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 24 #