data_1W4Z
#
_model_server_result.job_id            au4upzbCGQstFFXJPFa3Dg 
_model_server_result.datetime_utc      '2024-10-13 05:21:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1w4z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1262}' 
#
_entry.id    1W4Z 
#
_exptl.entry_id    1W4Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1W4Z 
_cell.length_a            103.43 
_cell.length_b            103.43 
_cell.length_c            122.823 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1W4Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 40.941 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 241 n n 
PA O2A NAP sing 242 n n 
PA O5B NAP sing 243 n n 
PA O3 NAP sing 244 n n 
O2A HOA2 NAP sing 245 n n 
O5B C5B NAP sing 246 n n 
C5B C4B NAP sing 247 n n 
C5B H51A NAP sing 248 n n 
C5B H52A NAP sing 249 n n 
C4B O4B NAP sing 250 n n 
C4B C3B NAP sing 251 n n 
C4B H4B NAP sing 252 n n 
O4B C1B NAP sing 253 n n 
C3B O3B NAP sing 254 n n 
C3B C2B NAP sing 255 n n 
C3B H3B NAP sing 256 n n 
O3B HO3A NAP sing 257 n n 
C2B O2B NAP sing 258 n n 
C2B C1B NAP sing 259 n n 
C2B H2B NAP sing 260 n n 
O2B P2B NAP sing 261 n n 
C1B N9A NAP sing 262 n n 
C1B H1B NAP sing 263 n n 
N9A C8A NAP sing 264 n y 
N9A C4A NAP sing 265 n y 
C8A N7A NAP doub 266 n y 
C8A H8A NAP sing 267 n n 
N7A C5A NAP sing 268 n y 
C5A C6A NAP sing 269 n y 
C5A C4A NAP doub 270 n y 
C6A N6A NAP sing 271 n n 
C6A N1A NAP doub 272 n y 
N6A H61A NAP sing 273 n n 
N6A H62A NAP sing 274 n n 
N1A C2A NAP sing 275 n y 
C2A N3A NAP doub 276 n y 
C2A H2A NAP sing 277 n n 
N3A C4A NAP sing 278 n y 
O3 PN NAP sing 279 n n 
PN O1N NAP doub 280 n n 
PN O2N NAP sing 281 n n 
PN O5D NAP sing 282 n n 
O5D C5D NAP sing 283 n n 
C5D C4D NAP sing 284 n n 
C5D H51N NAP sing 285 n n 
C5D H52N NAP sing 286 n n 
C4D O4D NAP sing 287 n n 
C4D C3D NAP sing 288 n n 
C4D H4D NAP sing 289 n n 
O4D C1D NAP sing 290 n n 
C3D O3D NAP sing 291 n n 
C3D C2D NAP sing 292 n n 
C3D H3D NAP sing 293 n n 
O3D HO3N NAP sing 294 n n 
C2D O2D NAP sing 295 n n 
C2D C1D NAP sing 296 n n 
C2D H2D NAP sing 297 n n 
O2D HO2N NAP sing 298 n n 
C1D N1N NAP sing 299 n n 
C1D H1D NAP sing 300 n n 
N1N C2N NAP sing 301 n y 
N1N C6N NAP doub 302 n y 
C2N C3N NAP doub 303 n y 
C2N H2N NAP sing 304 n n 
C3N C7N NAP sing 305 n n 
C3N C4N NAP sing 306 n y 
C7N O7N NAP doub 307 n n 
C7N N7N NAP sing 308 n n 
N7N H71N NAP sing 309 n n 
N7N H72N NAP sing 310 n n 
C4N C5N NAP doub 311 n y 
C4N H4N NAP sing 312 n n 
C5N C6N NAP sing 313 n y 
C5N H5N NAP sing 314 n n 
C6N H6N NAP sing 315 n n 
P2B O1X NAP doub 316 n n 
P2B O2X NAP sing 317 n n 
P2B O3X NAP sing 318 n n 
O2X HOP2 NAP sing 319 n n 
O3X HOP3 NAP sing 320 n n 
#
_atom_sites.entry_id                     1W4Z 
_atom_sites.fract_transf_matrix[1][1]    0.009668 
_atom_sites.fract_transf_matrix[1][2]    0.005582 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011164 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 1262 1262 NAP NAP . 
D 3 FMT A 1 1263 1263 FMT FMT . 
E 3 FMT A 1 1264 1264 FMT FMT . 
F 3 FMT A 1 1265 1265 FMT FMT . 
G 3 FMT A 1 1266 1266 FMT FMT . 
H 2 NAP B 1 1262 1262 NAP NAP . 
I 3 FMT B 1 1263 1263 FMT FMT . 
J 3 FMT B 1 1264 1264 FMT FMT . 
K 3 FMT B 1 1265 1265 FMT FMT . 
L 3 FMT B 1 1266 1266 FMT FMT . 
M 3 FMT B 1 1267 1267 FMT FMT . 
N 4 HOH A 1 2001 2001 HOH HOH . 
N 4 HOH A 2 2002 2002 HOH HOH . 
N 4 HOH A 3 2003 2003 HOH HOH . 
N 4 HOH A 4 2004 2004 HOH HOH . 
N 4 HOH A 5 2005 2005 HOH HOH . 
N 4 HOH A 6 2006 2006 HOH HOH . 
N 4 HOH A 7 2007 2007 HOH HOH . 
N 4 HOH A 8 2008 2008 HOH HOH . 
N 4 HOH A 9 2009 2009 HOH HOH . 
N 4 HOH A 10 2010 2010 HOH HOH . 
N 4 HOH A 11 2011 2011 HOH HOH . 
N 4 HOH A 12 2012 2012 HOH HOH . 
N 4 HOH A 13 2013 2013 HOH HOH . 
N 4 HOH A 14 2014 2014 HOH HOH . 
N 4 HOH A 15 2015 2015 HOH HOH . 
N 4 HOH A 16 2016 2016 HOH HOH . 
N 4 HOH A 17 2017 2017 HOH HOH . 
N 4 HOH A 18 2018 2018 HOH HOH . 
N 4 HOH A 19 2019 2019 HOH HOH . 
N 4 HOH A 20 2020 2020 HOH HOH . 
N 4 HOH A 21 2021 2021 HOH HOH . 
O 4 HOH B 1 2001 2001 HOH HOH . 
O 4 HOH B 2 2002 2002 HOH HOH . 
O 4 HOH B 3 2003 2003 HOH HOH . 
O 4 HOH B 4 2004 2004 HOH HOH . 
O 4 HOH B 5 2005 2005 HOH HOH . 
O 4 HOH B 6 2006 2006 HOH HOH . 
O 4 HOH B 7 2007 2007 HOH HOH . 
O 4 HOH B 8 2008 2008 HOH HOH . 
O 4 HOH B 9 2009 2009 HOH HOH . 
O 4 HOH B 10 2010 2010 HOH HOH . 
O 4 HOH B 11 2011 2011 HOH HOH . 
O 4 HOH B 12 2012 2012 HOH HOH . 
O 4 HOH B 13 2013 2013 HOH HOH . 
O 4 HOH B 14 2014 2014 HOH HOH . 
O 4 HOH B 15 2015 2015 HOH HOH . 
O 4 HOH B 16 2016 2016 HOH HOH . 
O 4 HOH B 17 2017 2017 HOH HOH . 
O 4 HOH B 18 2018 2018 HOH HOH . 
O 4 HOH B 19 2019 2019 HOH HOH . 
O 4 HOH B 20 2020 2020 HOH HOH . 
O 4 HOH B 21 2021 2021 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 2 54.484 3.466 44.788 1 37.47 ? PA NAP 1262 A 1 
HETATM 2 O O1A NAP . . . C 2 53.62 4.633 44.794 1 40.41 ? O1A NAP 1262 A 1 
HETATM 3 O O2A NAP . . . C 2 53.72 2.207 45.185 1 34.93 ? O2A NAP 1262 A 1 
HETATM 4 O O5B NAP . . . C 2 55.621 3.714 45.889 1 34.87 ? O5B NAP 1262 A 1 
HETATM 5 C C5B NAP . . . C 2 56.597 4.715 45.801 1 30.23 ? C5B NAP 1262 A 1 
HETATM 6 C C4B NAP . . . C 2 57.539 4.539 47 1 31.38 ? C4B NAP 1262 A 1 
HETATM 7 O O4B NAP . . . C 2 58.566 5.515 46.978 1 36.42 ? O4B NAP 1262 A 1 
HETATM 8 C C3B NAP . . . C 2 56.848 4.822 48.315 1 35.04 ? C3B NAP 1262 A 1 
HETATM 9 O O3B NAP . . . C 2 57.547 4.158 49.362 1 38.34 ? O3B NAP 1262 A 1 
HETATM 10 C C2B NAP . . . C 2 57.064 6.302 48.51 1 31.9 ? C2B NAP 1262 A 1 
HETATM 11 O O2B NAP . . . C 2 56.844 6.555 49.868 1 34.6 ? O2B NAP 1262 A 1 
HETATM 12 C C1B NAP . . . C 2 58.504 6.417 48.088 1 31.61 ? C1B NAP 1262 A 1 
HETATM 13 N N9A NAP . . . C 2 58.885 7.76 47.626 1 33.8 ? N9A NAP 1262 A 1 
HETATM 14 C C8A NAP . . . C 2 58.215 8.576 46.74 1 33.54 ? C8A NAP 1262 A 1 
HETATM 15 N N7A NAP . . . C 2 58.917 9.746 46.539 1 30.09 ? N7A NAP 1262 A 1 
HETATM 16 C C5A NAP . . . C 2 60.034 9.692 47.283 1 31.84 ? C5A NAP 1262 A 1 
HETATM 17 C C6A NAP . . . C 2 61.092 10.574 47.48 1 30.29 ? C6A NAP 1262 A 1 
HETATM 18 N N6A NAP . . . C 2 61.074 11.778 46.98 1 29.34 ? N6A NAP 1262 A 1 
HETATM 19 N N1A NAP . . . C 2 62.143 10.252 48.315 1 33.29 ? N1A NAP 1262 A 1 
HETATM 20 C C2A NAP . . . C 2 62.097 9.017 48.947 1 31.7 ? C2A NAP 1262 A 1 
HETATM 21 N N3A NAP . . . C 2 61.048 8.147 48.747 1 26.32 ? N3A NAP 1262 A 1 
HETATM 22 C C4A NAP . . . C 2 60.034 8.452 47.942 1 31.65 ? C4A NAP 1262 A 1 
HETATM 23 O O3 NAP . . . C 2 55.28 3.321 43.38 1 32.39 ? O3 NAP 1262 A 1 
HETATM 24 P PN NAP . . . C 2 55.461 1.989 42.514 1 32.44 ? PN NAP 1262 A 1 
HETATM 25 O O1N NAP . . . C 2 54.379 1.776 41.532 1 34.43 ? O1N NAP 1262 A 1 
HETATM 26 O O2N NAP . . . C 2 55.885 0.831 43.359 1 32.64 ? O2N NAP 1262 A 1 
HETATM 27 O O5D NAP . . . C 2 56.751 2.406 41.646 1 34.48 ? O5D NAP 1262 A 1 
HETATM 28 C C5D NAP . . . C 2 58.048 2.331 42.19 1 33.36 ? C5D NAP 1262 A 1 
HETATM 29 C C4D NAP . . . C 2 59.087 2.512 41.086 1 35.59 ? C4D NAP 1262 A 1 
HETATM 30 O O4D NAP . . . C 2 58.786 1.767 39.91 1 36.98 ? O4D NAP 1262 A 1 
HETATM 31 C C3D NAP . . . C 2 59.057 3.966 40.669 1 34.73 ? C3D NAP 1262 A 1 
HETATM 32 O O3D NAP . . . C 2 60.318 4.316 40.154 1 37.17 ? O3D NAP 1262 A 1 
HETATM 33 C C2D NAP . . . C 2 58.133 3.964 39.503 1 31.99 ? C2D NAP 1262 A 1 
HETATM 34 O O2D NAP . . . C 2 58.479 5.067 38.707 1 38.41 ? O2D NAP 1262 A 1 
HETATM 35 C C1D NAP . . . C 2 58.555 2.662 38.846 1 34.55 ? C1D NAP 1262 A 1 
HETATM 36 N N1N NAP . . . C 2 57.521 2.143 37.926 1 34.68 ? N1N NAP 1262 A 1 
HETATM 37 C C2N NAP . . . C 2 56.274 1.813 38.356 1 31.12 ? C2N NAP 1262 A 1 
HETATM 38 C C3N NAP . . . C 2 55.343 1.35 37.405 1 35.65 ? C3N NAP 1262 A 1 
HETATM 39 C C7N NAP . . . C 2 53.973 0.9 37.787 1 30.64 ? C7N NAP 1262 A 1 
HETATM 40 O O7N NAP . . . C 2 53.162 0.474 36.763 1 33.6 ? O7N NAP 1262 A 1 
HETATM 41 N N7N NAP . . . C 2 53.562 0.88 39.038 1 32.92 ? N7N NAP 1262 A 1 
HETATM 42 C C4N NAP . . . C 2 55.674 1.186 36.064 1 33.91 ? C4N NAP 1262 A 1 
HETATM 43 C C5N NAP . . . C 2 56.946 1.532 35.661 1 36.64 ? C5N NAP 1262 A 1 
HETATM 44 C C6N NAP . . . C 2 57.854 2.007 36.606 1 35.86 ? C6N NAP 1262 A 1 
HETATM 45 P P2B NAP . . . C 2 56.615 8.029 50.447 1 33.64 ? P2B NAP 1262 A 1 
HETATM 46 O O1X NAP . . . C 2 55.59 8.728 49.643 1 29.77 ? O1X NAP 1262 A 1 
HETATM 47 O O2X NAP . . . C 2 56.23 7.964 51.933 1 34.93 ? O2X NAP 1262 A 1 
HETATM 48 O O3X NAP . . . C 2 57.976 8.724 50.28 1 29.98 ? O3X NAP 1262 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#