data_1W52 # _model_server_result.job_id 4kAMl9rsuCcxtSS91n3mOg _model_server_result.datetime_utc '2024-11-23 11:30:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1w52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1W52 # _exptl.entry_id 1W52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECYLAMINE-N,N-DIMETHYL-N-OXIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1W52 _cell.length_a 128.426 _cell.length_b 128.426 _cell.length_c 85.818 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 X CYS 4 1_555 A SG CYS 10 X CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 A SG CYS 92 X CYS 92 1_555 A SG CYS 103 X CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 A SG CYS 239 X CYS 239 1_555 A SG CYS 263 X CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 A SG CYS 287 X CYS 287 1_555 A SG CYS 298 X CYS 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf5 A SG CYS 301 X CYS 301 1_555 A SG CYS 306 X CYS 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 A SG CYS 436 X CYS 436 1_555 A SG CYS 452 X CYS 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A O GLU 189 X GLU 189 1_555 E CA CA . X CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc2 A O ARG 192 X ARG 192 1_555 E CA CA . X CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.309 ? metalc ? metalc3 A OD1 ASP 194 X ASP 194 1_555 E CA CA . X CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc4 A OD1 ASP 197 X ASP 197 1_555 E CA CA . X CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc5 A OD2 ASP 197 X ASP 197 1_555 E CA CA . X CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc6 A OD1 ASP 314 X ASP 314 1_555 D CA CA . X CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.257 ? metalc ? metalc7 A OD2 ASP 314 X ASP 314 1_555 D CA CA . X CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? # _chem_comp.formula 'C12 H27 N O' _chem_comp.formula_weight 201.349 _chem_comp.id DDQ _chem_comp.mon_nstd_flag . _chem_comp.name DECYLAMINE-N,N-DIMETHYL-N-OXIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 DDQ sing 83 n n N1 CM1 DDQ sing 84 n n N1 CM2 DDQ sing 85 n n N1 C1 DDQ sing 86 n n CM1 HM11 DDQ sing 87 n n CM1 HM12 DDQ sing 88 n n CM1 HM13 DDQ sing 89 n n CM2 HM21 DDQ sing 90 n n CM2 HM22 DDQ sing 91 n n CM2 HM23 DDQ sing 92 n n C1 C2 DDQ sing 93 n n C1 H11 DDQ sing 94 n n C1 H12 DDQ sing 95 n n C2 C3 DDQ sing 96 n n C2 H21 DDQ sing 97 n n C2 H22 DDQ sing 98 n n C3 C4 DDQ sing 99 n n C3 H31 DDQ sing 100 n n C3 H32 DDQ sing 101 n n C4 C5 DDQ sing 102 n n C4 H41 DDQ sing 103 n n C4 H42 DDQ sing 104 n n C5 C6 DDQ sing 105 n n C5 H51 DDQ sing 106 n n C5 H52 DDQ sing 107 n n C6 C7 DDQ sing 108 n n C6 H61 DDQ sing 109 n n C6 H62 DDQ sing 110 n n C7 C8 DDQ sing 111 n n C7 H71 DDQ sing 112 n n C7 H72 DDQ sing 113 n n C8 C9 DDQ sing 114 n n C8 H81 DDQ sing 115 n n C8 H82 DDQ sing 116 n n C9 C10 DDQ sing 117 n n C9 H91 DDQ sing 118 n n C9 H92 DDQ sing 119 n n C10 H101 DDQ sing 120 n n C10 H102 DDQ sing 121 n n C10 H103 DDQ sing 122 n n # _atom_sites.entry_id 1W52 _atom_sites.fract_transf_matrix[1][1] 0.007787 _atom_sites.fract_transf_matrix[1][2] 0.004496 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DDQ X 1 501 501 DDQ DDQ . C 2 DDQ X 1 502 502 DDQ DDQ . D 3 CA X 1 601 601 CA CA . E 3 CA X 1 602 602 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DDQ . . . B 2 11 114.826 15.853 1 35.96 ? N1 DDQ 501 X 1 HETATM 2 O O1 DDQ . . . B 2 11.008 116.107 15.938 1 41.55 ? O1 DDQ 501 X 1 HETATM 3 C CM1 DDQ . . . B 2 9.847 114.302 15.022 1 35.42 ? CM1 DDQ 501 X 1 HETATM 4 C CM2 DDQ . . . B 2 12.354 114.334 15.309 1 33.72 ? CM2 DDQ 501 X 1 HETATM 5 C C1 DDQ . . . B 2 10.697 114.503 17.287 1 30.74 ? C1 DDQ 501 X 1 HETATM 6 C C2 DDQ . . . B 2 9.379 115.157 17.742 1 27.29 ? C2 DDQ 501 X 1 HETATM 7 C C3 DDQ . . . B 2 9.621 116.191 18.822 1 25.09 ? C3 DDQ 501 X 1 HETATM 8 C C4 DDQ . . . B 2 8.632 116.061 19.982 1 21.79 ? C4 DDQ 501 X 1 HETATM 9 C C5 DDQ . . . B 2 9.325 116.376 21.284 1 20.14 ? C5 DDQ 501 X 1 HETATM 10 C C6 DDQ . . . B 2 8.284 116.628 22.341 1 20.97 ? C6 DDQ 501 X 1 HETATM 11 C C7 DDQ . . . B 2 8.937 116.563 23.718 1 24.12 ? C7 DDQ 501 X 1 HETATM 12 C C8 DDQ . . . B 2 7.909 116.728 24.845 1 28.02 ? C8 DDQ 501 X 1 HETATM 13 C C9 DDQ . . . B 2 7.855 118.168 25.384 1 32.59 ? C9 DDQ 501 X 1 HETATM 14 C C10 DDQ . . . B 2 7.004 119.174 24.568 1 33.42 ? C10 DDQ 501 X 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #