data_1W5X # _model_server_result.job_id W1E4sUQ_SQBGGp4umvzSXQ _model_server_result.datetime_utc '2025-02-27 02:45:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1w5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1W5X # _exptl.entry_id 1W5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 724.695 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2R,3R,4R,5R)-2,5-BIS[(2,3-DIFLUOROBENZYL)OXY]-3,4-DIHYDROXY-N,N'-BIS[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]HEXAN EDIAMIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1W5X _cell.length_a 58.46 _cell.length_b 86.32 _cell.length_c 46.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H36 F4 N2 O8' _chem_comp.formula_weight 724.695 _chem_comp.id BE5 _chem_comp.mon_nstd_flag . _chem_comp.name "(2R,3R,4R,5R)-2,5-BIS[(2,3-DIFLUOROBENZYL)OXY]-3,4-DIHYDROXY-N,N'-BIS[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]HEXAN EDIAMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HIV-1 INHIBITOR' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 BE5 doub 70 n y C01 C06 BE5 sing 71 n y C01 C23 BE5 sing 72 n n C02 C03 BE5 sing 73 n y C02 H02 BE5 sing 74 n n C03 C04 BE5 doub 75 n y C03 H03 BE5 sing 76 n n C04 C05 BE5 sing 77 n y C04 H04 BE5 sing 78 n n C05 C06 BE5 doub 79 n y C05 F50 BE5 sing 80 n n C06 F51 BE5 sing 81 n n C07 C08 BE5 doub 82 n y C07 C12 BE5 sing 83 n y C07 C13 BE5 sing 84 n n C08 C09 BE5 sing 85 n y C08 F52 BE5 sing 86 n n C09 C10 BE5 doub 87 n y C09 F49 BE5 sing 88 n n C10 C11 BE5 sing 89 n y C10 H10 BE5 sing 90 n n C11 C12 BE5 doub 91 n y C11 H11 BE5 sing 92 n n C12 H12 BE5 sing 93 n n C13 O14 BE5 sing 94 n n C13 H131 BE5 sing 95 n n C13 H132 BE5 sing 96 n n O14 C15 BE5 sing 97 n n C15 C16 BE5 sing 98 n n C15 C26 BE5 sing 99 n n C15 H15 BE5 sing 100 n n C16 C17 BE5 sing 101 n n C16 O25 BE5 sing 102 n n C16 H16 BE5 sing 103 n n C17 C18 BE5 sing 104 n n C17 O24 BE5 sing 105 n n C17 H17 BE5 sing 106 n n C18 C19 BE5 sing 107 n n C18 O22 BE5 sing 108 n n C18 H18 BE5 sing 109 n n C19 O20 BE5 doub 110 n n C19 N21 BE5 sing 111 n n N21 C39 BE5 sing 112 n n N21 H21 BE5 sing 113 n n O22 C23 BE5 sing 114 n n C23 H231 BE5 sing 115 n n C23 H232 BE5 sing 116 n n O24 H24 BE5 sing 117 n n O25 H25 BE5 sing 118 n n C26 O27 BE5 doub 119 n n C26 N28 BE5 sing 120 n n N28 C29 BE5 sing 121 n n N28 H28 BE5 sing 122 n n C29 C30 BE5 sing 123 n n C29 C35 BE5 sing 124 n n C29 H29 BE5 sing 125 n n C30 C31 BE5 doub 126 n y C30 C32 BE5 sing 127 n y C31 C37 BE5 sing 128 n y C31 C38 BE5 sing 129 n n C32 C33 BE5 doub 130 n y C32 H32 BE5 sing 131 n n C33 C34 BE5 sing 132 n y C33 H33 BE5 sing 133 n n C34 C37 BE5 doub 134 n y C34 H34 BE5 sing 135 n n C35 O36 BE5 sing 136 n n C35 C38 BE5 sing 137 n n C35 H35 BE5 sing 138 n n O36 H36 BE5 sing 139 n n C37 H37 BE5 sing 140 n n C38 H381 BE5 sing 141 n n C38 H382 BE5 sing 142 n n C39 C40 BE5 sing 143 n n C39 C45 BE5 sing 144 n n C39 H39 BE5 sing 145 n n C40 C41 BE5 doub 146 n y C40 C42 BE5 sing 147 n y C41 C47 BE5 sing 148 n y C41 C48 BE5 sing 149 n n C42 C43 BE5 doub 150 n y C42 H42 BE5 sing 151 n n C43 C44 BE5 sing 152 n y C43 H43 BE5 sing 153 n n C44 C47 BE5 doub 154 n y C44 H44 BE5 sing 155 n n C45 O46 BE5 sing 156 n n C45 C48 BE5 sing 157 n n C45 H45 BE5 sing 158 n n O46 H46 BE5 sing 159 n n C47 H47 BE5 sing 160 n n C48 H481 BE5 sing 161 n n C48 H482 BE5 sing 162 n n # _atom_sites.entry_id 1W5X _atom_sites.fract_transf_matrix[1][1] 0.017085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BE5 A 1 501 501 BE5 BE5 . D 3 HOH A 1 2001 2001 HOH HOH . D 3 HOH A 2 2002 2002 HOH HOH . D 3 HOH A 3 2003 2003 HOH HOH . D 3 HOH A 4 2004 2004 HOH HOH . D 3 HOH A 5 2005 2005 HOH HOH . D 3 HOH A 6 2006 2006 HOH HOH . D 3 HOH A 7 2007 2007 HOH HOH . D 3 HOH A 8 2008 2008 HOH HOH . D 3 HOH A 9 2009 2009 HOH HOH . D 3 HOH A 10 2010 2010 HOH HOH . D 3 HOH A 11 2011 2011 HOH HOH . D 3 HOH A 12 2012 2012 HOH HOH . D 3 HOH A 13 2013 2013 HOH HOH . D 3 HOH A 14 2014 2014 HOH HOH . D 3 HOH A 15 2015 2015 HOH HOH . D 3 HOH A 16 2016 2016 HOH HOH . D 3 HOH A 17 2017 2017 HOH HOH . D 3 HOH A 18 2018 2018 HOH HOH . D 3 HOH A 19 2019 2019 HOH HOH . D 3 HOH A 20 2020 2020 HOH HOH . D 3 HOH A 21 2021 2021 HOH HOH . D 3 HOH A 22 2022 2022 HOH HOH . D 3 HOH A 23 2023 2023 HOH HOH . D 3 HOH A 24 2024 2024 HOH HOH . D 3 HOH A 25 2025 2025 HOH HOH . D 3 HOH A 26 2026 2026 HOH HOH . D 3 HOH A 27 2027 2027 HOH HOH . D 3 HOH A 28 2028 2028 HOH HOH . D 3 HOH A 29 2029 2029 HOH HOH . D 3 HOH A 30 2030 2030 HOH HOH . D 3 HOH A 31 2031 2031 HOH HOH . D 3 HOH A 32 2032 2032 HOH HOH . D 3 HOH A 33 2033 2033 HOH HOH . D 3 HOH A 34 2034 2034 HOH HOH . D 3 HOH A 35 2035 2035 HOH HOH . D 3 HOH A 36 2036 2036 HOH HOH . D 3 HOH A 37 2037 2037 HOH HOH . D 3 HOH A 38 2038 2038 HOH HOH . D 3 HOH A 39 2039 2039 HOH HOH . D 3 HOH A 40 2040 2040 HOH HOH . D 3 HOH A 41 2041 2041 HOH HOH . D 3 HOH A 42 2042 2042 HOH HOH . D 3 HOH A 43 2043 2043 HOH HOH . D 3 HOH A 44 2044 2044 HOH HOH . D 3 HOH A 45 2045 2045 HOH HOH . D 3 HOH A 46 2046 2046 HOH HOH . D 3 HOH A 47 2047 2047 HOH HOH . D 3 HOH A 48 2048 2048 HOH HOH . D 3 HOH A 49 2049 2049 HOH HOH . D 3 HOH A 50 2050 2050 HOH HOH . D 3 HOH A 51 2051 2051 HOH HOH . D 3 HOH A 52 2052 2052 HOH HOH . D 3 HOH A 53 2053 2053 HOH HOH . D 3 HOH A 54 2054 2054 HOH HOH . D 3 HOH A 55 2055 2055 HOH HOH . D 3 HOH A 56 2056 2056 HOH HOH . E 3 HOH B 1 2001 2001 HOH HOH . E 3 HOH B 2 2002 2002 HOH HOH . E 3 HOH B 3 2003 2003 HOH HOH . E 3 HOH B 4 2004 2004 HOH HOH . E 3 HOH B 5 2005 2005 HOH HOH . E 3 HOH B 6 2006 2006 HOH HOH . E 3 HOH B 7 2007 2007 HOH HOH . E 3 HOH B 8 2008 2008 HOH HOH . E 3 HOH B 9 2009 2009 HOH HOH . E 3 HOH B 10 2010 2010 HOH HOH . E 3 HOH B 11 2011 2011 HOH HOH . E 3 HOH B 12 2012 2012 HOH HOH . E 3 HOH B 13 2013 2013 HOH HOH . E 3 HOH B 14 2014 2014 HOH HOH . E 3 HOH B 15 2015 2015 HOH HOH . E 3 HOH B 16 2016 2016 HOH HOH . E 3 HOH B 17 2017 2017 HOH HOH . E 3 HOH B 18 2018 2018 HOH HOH . E 3 HOH B 19 2019 2019 HOH HOH . E 3 HOH B 20 2020 2020 HOH HOH . E 3 HOH B 21 2021 2021 HOH HOH . E 3 HOH B 22 2022 2022 HOH HOH . E 3 HOH B 23 2023 2023 HOH HOH . E 3 HOH B 24 2024 2024 HOH HOH . E 3 HOH B 25 2025 2025 HOH HOH . E 3 HOH B 26 2026 2026 HOH HOH . E 3 HOH B 27 2027 2027 HOH HOH . E 3 HOH B 28 2028 2028 HOH HOH . E 3 HOH B 29 2029 2029 HOH HOH . E 3 HOH B 30 2030 2030 HOH HOH . E 3 HOH B 31 2031 2031 HOH HOH . E 3 HOH B 32 2032 2032 HOH HOH . E 3 HOH B 33 2033 2033 HOH HOH . E 3 HOH B 34 2034 2034 HOH HOH . E 3 HOH B 35 2035 2035 HOH HOH . E 3 HOH B 36 2036 2036 HOH HOH . E 3 HOH B 37 2037 2037 HOH HOH . E 3 HOH B 38 2038 2038 HOH HOH . E 3 HOH B 39 2039 2039 HOH HOH . E 3 HOH B 40 2040 2040 HOH HOH . E 3 HOH B 41 2041 2041 HOH HOH . E 3 HOH B 42 2042 2042 HOH HOH . E 3 HOH B 43 2043 2043 HOH HOH . E 3 HOH B 44 2044 2044 HOH HOH . E 3 HOH B 45 2045 2045 HOH HOH . E 3 HOH B 46 2046 2046 HOH HOH . E 3 HOH B 47 2047 2047 HOH HOH . E 3 HOH B 48 2048 2048 HOH HOH . E 3 HOH B 49 2049 2049 HOH HOH . E 3 HOH B 50 2050 2050 HOH HOH . E 3 HOH B 51 2051 2051 HOH HOH . E 3 HOH B 52 2052 2052 HOH HOH . E 3 HOH B 53 2053 2053 HOH HOH . E 3 HOH B 54 2054 2054 HOH HOH . E 3 HOH B 55 2055 2055 HOH HOH . E 3 HOH B 56 2056 2056 HOH HOH . E 3 HOH B 57 2057 2057 HOH HOH . E 3 HOH B 58 2058 2058 HOH HOH . E 3 HOH B 59 2059 2059 HOH HOH . E 3 HOH B 60 2060 2060 HOH HOH . E 3 HOH B 61 2061 2061 HOH HOH . E 3 HOH B 62 2062 2062 HOH HOH . E 3 HOH B 63 2063 2063 HOH HOH . E 3 HOH B 64 2064 2064 HOH HOH . E 3 HOH B 65 2065 2065 HOH HOH . E 3 HOH B 66 2066 2066 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 BE5 . . . C 2 16.567 21.959 8.756 1 24.49 ? C01 BE5 501 A 1 HETATM 2 C C02 BE5 . . . C 2 18.013 21.787 8.523 1 24.3 ? C02 BE5 501 A 1 HETATM 3 C C03 BE5 . . . C 2 18.711 20.561 8.861 1 26.88 ? C03 BE5 501 A 1 HETATM 4 C C04 BE5 . . . C 2 17.983 19.429 9.455 1 26.55 ? C04 BE5 501 A 1 HETATM 5 C C05 BE5 . . . C 2 16.53 19.562 9.702 1 25.99 ? C05 BE5 501 A 1 HETATM 6 C C06 BE5 . . . C 2 15.843 20.8 9.359 1 25.99 ? C06 BE5 501 A 1 HETATM 7 C C07 BE5 . . . C 2 9.811 23.856 2.186 1 21.04 ? C07 BE5 501 A 1 HETATM 8 C C08 BE5 . . . C 2 8.77 22.928 2.668 1 23.02 ? C08 BE5 501 A 1 HETATM 9 C C09 BE5 . . . C 2 7.342 23.366 2.704 1 21.73 ? C09 BE5 501 A 1 HETATM 10 C C10 BE5 . . . C 2 6.981 24.748 2.245 1 24.35 ? C10 BE5 501 A 1 HETATM 11 C C11 BE5 . . . C 2 8.069 25.653 1.764 1 23.62 ? C11 BE5 501 A 1 HETATM 12 C C12 BE5 . . . C 2 9.435 25.199 1.746 1 22.67 ? C12 BE5 501 A 1 HETATM 13 C C13 BE5 . . . C 2 11.29 23.491 2.127 1 21.08 ? C13 BE5 501 A 1 HETATM 14 O O14 BE5 . . . C 2 11.76 23.061 3.446 1 19.29 ? O14 BE5 501 A 1 HETATM 15 C C15 BE5 . . . C 2 11.936 24.08 4.576 1 18.51 ? C15 BE5 501 A 1 HETATM 16 C C16 BE5 . . . C 2 12.997 23.686 5.566 1 20.53 ? C16 BE5 501 A 1 HETATM 17 C C17 BE5 . . . C 2 14.282 23.465 4.915 1 20.08 ? C17 BE5 501 A 1 HETATM 18 C C18 BE5 . . . C 2 15.229 22.727 5.959 1 18.95 ? C18 BE5 501 A 1 HETATM 19 C C19 BE5 . . . C 2 15.186 21.217 5.792 1 17.37 ? C19 BE5 501 A 1 HETATM 20 O O20 BE5 . . . C 2 14.128 20.572 6.003 1 18.21 ? O20 BE5 501 A 1 HETATM 21 N N21 BE5 . . . C 2 16.34 20.585 5.428 1 14.53 ? N21 BE5 501 A 1 HETATM 22 O O22 BE5 . . . C 2 14.886 23.062 7.373 1 22.02 ? O22 BE5 501 A 1 HETATM 23 C C23 BE5 . . . C 2 15.946 23.304 8.351 1 23.01 ? C23 BE5 501 A 1 HETATM 24 O O24 BE5 . . . C 2 14.843 24.745 4.519 1 17.11 ? O24 BE5 501 A 1 HETATM 25 O O25 BE5 . . . C 2 13.137 24.798 6.543 1 21.98 ? O25 BE5 501 A 1 HETATM 26 C C26 BE5 . . . C 2 10.697 24.217 5.367 1 16.79 ? C26 BE5 501 A 1 HETATM 27 O O27 BE5 . . . C 2 10.267 23.236 6.026 1 20.11 ? O27 BE5 501 A 1 HETATM 28 N N28 BE5 . . . C 2 10.049 25.41 5.37 1 15.99 ? N28 BE5 501 A 1 HETATM 29 C C29 BE5 . . . C 2 8.831 25.605 6.129 1 16 ? C29 BE5 501 A 1 HETATM 30 C C30 BE5 . . . C 2 9.143 26.303 7.414 1 16.23 ? C30 BE5 501 A 1 HETATM 31 C C31 BE5 . . . C 2 8.009 27.145 7.803 1 17.03 ? C31 BE5 501 A 1 HETATM 32 C C32 BE5 . . . C 2 10.361 26.247 8.258 1 16.86 ? C32 BE5 501 A 1 HETATM 33 C C33 BE5 . . . C 2 10.414 27.064 9.512 1 18.24 ? C33 BE5 501 A 1 HETATM 34 C C34 BE5 . . . C 2 9.256 27.9 9.874 1 19.35 ? C34 BE5 501 A 1 HETATM 35 C C35 BE5 . . . C 2 7.766 26.571 5.544 1 16.83 ? C35 BE5 501 A 1 HETATM 36 O O36 BE5 . . . C 2 8.483 27.646 4.889 1 14.03 ? O36 BE5 501 A 1 HETATM 37 C C37 BE5 . . . C 2 8.044 27.954 9.034 1 17.71 ? C37 BE5 501 A 1 HETATM 38 C C38 BE5 . . . C 2 6.94 27.011 6.789 1 16.65 ? C38 BE5 501 A 1 HETATM 39 C C39 BE5 . . . C 2 16.442 19.156 5.25 1 14.05 ? C39 BE5 501 A 1 HETATM 40 C C40 BE5 . . . C 2 16.36 18.758 3.782 1 15.79 ? C40 BE5 501 A 1 HETATM 41 C C41 BE5 . . . C 2 17.305 17.688 3.51 1 16.99 ? C41 BE5 501 A 1 HETATM 42 C C42 BE5 . . . C 2 15.512 19.292 2.705 1 16.33 ? C42 BE5 501 A 1 HETATM 43 C C43 BE5 . . . C 2 15.636 18.719 1.33 1 18.87 ? C43 BE5 501 A 1 HETATM 44 C C44 BE5 . . . C 2 16.601 17.64 1.096 1 17.66 ? C44 BE5 501 A 1 HETATM 45 C C45 BE5 . . . C 2 17.846 18.62 5.638 1 13.23 ? C45 BE5 501 A 1 HETATM 46 O O46 BE5 . . . C 2 18.812 19.662 5.343 1 13.13 ? O46 BE5 501 A 1 HETATM 47 C C47 BE5 . . . C 2 17.449 17.103 2.162 1 17.22 ? C47 BE5 501 A 1 HETATM 48 C C48 BE5 . . . C 2 18.023 17.353 4.783 1 15.28 ? C48 BE5 501 A 1 HETATM 49 F F49 BE5 . . . C 2 6.315 22.45 3.184 1 27.68 ? F49 BE5 501 A 1 HETATM 50 F F50 BE5 . . . C 2 15.778 18.448 10.291 1 29.63 ? F50 BE5 501 A 1 HETATM 51 F F51 BE5 . . . C 2 14.351 20.974 9.593 1 27.35 ? F51 BE5 501 A 1 HETATM 52 F F52 BE5 . . . C 2 9.143 21.56 3.121 1 24.3 ? F52 BE5 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 52 #