data_1W5Y # _model_server_result.job_id RN1k6YFMcrhvHcrJj8d_tA _model_server_result.datetime_utc '2025-02-27 02:32:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1w5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1100}' # _entry.id 1W5Y # _exptl.entry_id 1W5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 724.695 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2R,3R,4R,5R)-2,5-BIS[(2,5-DIFLUOROBENZYL)OXY]-3,4-DIHYDROXY-N,N'-BIS[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]HEXANEDIAMIDE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1W5Y _cell.length_a 59.158 _cell.length_b 86.954 _cell.length_c 47.218 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H36 F4 N2 O8' _chem_comp.formula_weight 724.695 _chem_comp.id BE6 _chem_comp.mon_nstd_flag . _chem_comp.name "(2R,3R,4R,5R)-2,5-BIS[(2,5-DIFLUOROBENZYL)OXY]-3,4-DIHYDROXY-N,N'-BIS[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]HEXANEDIAMIDE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HIV-1 INHIBITOR' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 BE6 doub 70 n y C01 C06 BE6 sing 71 n y C01 C23 BE6 sing 72 n n C02 C03 BE6 sing 73 n y C02 H02 BE6 sing 74 n n C03 C04 BE6 doub 75 n y C03 F50 BE6 sing 76 n n C04 C05 BE6 sing 77 n y C04 H04 BE6 sing 78 n n C05 C06 BE6 doub 79 n y C05 H05 BE6 sing 80 n n C06 F51 BE6 sing 81 n n C07 C08 BE6 doub 82 n y C07 C12 BE6 sing 83 n y C07 C13 BE6 sing 84 n n C08 C09 BE6 sing 85 n y C08 F52 BE6 sing 86 n n C09 C10 BE6 doub 87 n y C09 H09 BE6 sing 88 n n C10 C11 BE6 sing 89 n y C10 H10 BE6 sing 90 n n C11 C12 BE6 doub 91 n y C11 F49 BE6 sing 92 n n C12 H12 BE6 sing 93 n n C13 O14 BE6 sing 94 n n C13 H131 BE6 sing 95 n n C13 H132 BE6 sing 96 n n O14 C15 BE6 sing 97 n n C15 C16 BE6 sing 98 n n C15 C26 BE6 sing 99 n n C15 H15 BE6 sing 100 n n C16 C17 BE6 sing 101 n n C16 O25 BE6 sing 102 n n C16 H16 BE6 sing 103 n n C17 C18 BE6 sing 104 n n C17 O24 BE6 sing 105 n n C17 H17 BE6 sing 106 n n C18 C19 BE6 sing 107 n n C18 O22 BE6 sing 108 n n C18 H18 BE6 sing 109 n n C19 O20 BE6 doub 110 n n C19 N21 BE6 sing 111 n n N21 C39 BE6 sing 112 n n N21 H21 BE6 sing 113 n n O22 C23 BE6 sing 114 n n C23 H231 BE6 sing 115 n n C23 H232 BE6 sing 116 n n O24 H24 BE6 sing 117 n n O25 H25 BE6 sing 118 n n C26 O27 BE6 doub 119 n n C26 N28 BE6 sing 120 n n N28 C29 BE6 sing 121 n n N28 H28 BE6 sing 122 n n C29 C30 BE6 sing 123 n n C29 C35 BE6 sing 124 n n C29 H29 BE6 sing 125 n n C30 C31 BE6 doub 126 n y C30 C32 BE6 sing 127 n y C31 C37 BE6 sing 128 n y C31 C38 BE6 sing 129 n n C32 C33 BE6 doub 130 n y C32 H32 BE6 sing 131 n n C33 C34 BE6 sing 132 n y C33 H33 BE6 sing 133 n n C34 C37 BE6 doub 134 n y C34 H34 BE6 sing 135 n n C35 O36 BE6 sing 136 n n C35 C38 BE6 sing 137 n n C35 H35 BE6 sing 138 n n O36 H36 BE6 sing 139 n n C37 H37 BE6 sing 140 n n C38 H381 BE6 sing 141 n n C38 H382 BE6 sing 142 n n C39 C40 BE6 sing 143 n n C39 C45 BE6 sing 144 n n C39 H39 BE6 sing 145 n n C40 C41 BE6 doub 146 n y C40 C42 BE6 sing 147 n y C41 C47 BE6 sing 148 n y C41 C48 BE6 sing 149 n n C42 C43 BE6 doub 150 n y C42 H42 BE6 sing 151 n n C43 C44 BE6 sing 152 n y C43 H43 BE6 sing 153 n n C44 C47 BE6 doub 154 n y C44 H44 BE6 sing 155 n n C45 O46 BE6 sing 156 n n C45 C48 BE6 sing 157 n n C45 H45 BE6 sing 158 n n O46 H46 BE6 sing 159 n n C47 H47 BE6 sing 160 n n C48 H481 BE6 sing 161 n n C48 H482 BE6 sing 162 n n # _atom_sites.entry_id 1W5Y _atom_sites.fract_transf_matrix[1][1] 0.016904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BE6 A 1 1100 1100 BE6 BE6 . D 3 HOH A 1 2001 2001 HOH HOH . D 3 HOH A 2 2002 2002 HOH HOH . D 3 HOH A 3 2003 2003 HOH HOH . D 3 HOH A 4 2004 2004 HOH HOH . D 3 HOH A 5 2005 2005 HOH HOH . D 3 HOH A 6 2006 2006 HOH HOH . D 3 HOH A 7 2007 2007 HOH HOH . D 3 HOH A 8 2008 2008 HOH HOH . D 3 HOH A 9 2009 2009 HOH HOH . D 3 HOH A 10 2010 2010 HOH HOH . D 3 HOH A 11 2011 2011 HOH HOH . D 3 HOH A 12 2012 2012 HOH HOH . D 3 HOH A 13 2013 2013 HOH HOH . D 3 HOH A 14 2014 2014 HOH HOH . D 3 HOH A 15 2015 2015 HOH HOH . D 3 HOH A 16 2016 2016 HOH HOH . D 3 HOH A 17 2017 2017 HOH HOH . D 3 HOH A 18 2018 2018 HOH HOH . D 3 HOH A 19 2019 2019 HOH HOH . D 3 HOH A 20 2020 2020 HOH HOH . D 3 HOH A 21 2021 2021 HOH HOH . D 3 HOH A 22 2022 2022 HOH HOH . D 3 HOH A 23 2023 2023 HOH HOH . D 3 HOH A 24 2024 2024 HOH HOH . D 3 HOH A 25 2025 2025 HOH HOH . D 3 HOH A 26 2026 2026 HOH HOH . D 3 HOH A 27 2027 2027 HOH HOH . D 3 HOH A 28 2028 2028 HOH HOH . D 3 HOH A 29 2029 2029 HOH HOH . D 3 HOH A 30 2030 2030 HOH HOH . D 3 HOH A 31 2031 2031 HOH HOH . D 3 HOH A 32 2032 2032 HOH HOH . D 3 HOH A 33 2033 2033 HOH HOH . D 3 HOH A 34 2034 2034 HOH HOH . D 3 HOH A 35 2035 2035 HOH HOH . D 3 HOH A 36 2036 2036 HOH HOH . D 3 HOH A 37 2037 2037 HOH HOH . D 3 HOH A 38 2038 2038 HOH HOH . D 3 HOH A 39 2039 2039 HOH HOH . D 3 HOH A 40 2040 2040 HOH HOH . D 3 HOH A 41 2041 2041 HOH HOH . D 3 HOH A 42 2042 2042 HOH HOH . D 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH B 1 2001 2001 HOH HOH . E 3 HOH B 2 2002 2002 HOH HOH . E 3 HOH B 3 2003 2003 HOH HOH . E 3 HOH B 4 2004 2004 HOH HOH . E 3 HOH B 5 2005 2005 HOH HOH . E 3 HOH B 6 2006 2006 HOH HOH . E 3 HOH B 7 2007 2007 HOH HOH . E 3 HOH B 8 2008 2008 HOH HOH . E 3 HOH B 9 2009 2009 HOH HOH . E 3 HOH B 10 2010 2010 HOH HOH . E 3 HOH B 11 2011 2011 HOH HOH . E 3 HOH B 12 2012 2012 HOH HOH . E 3 HOH B 13 2013 2013 HOH HOH . E 3 HOH B 14 2014 2014 HOH HOH . E 3 HOH B 15 2015 2015 HOH HOH . E 3 HOH B 16 2016 2016 HOH HOH . E 3 HOH B 17 2017 2017 HOH HOH . E 3 HOH B 18 2018 2018 HOH HOH . E 3 HOH B 19 2019 2019 HOH HOH . E 3 HOH B 20 2020 2020 HOH HOH . E 3 HOH B 21 2021 2021 HOH HOH . E 3 HOH B 22 2022 2022 HOH HOH . E 3 HOH B 23 2023 2023 HOH HOH . E 3 HOH B 24 2024 2024 HOH HOH . E 3 HOH B 25 2025 2025 HOH HOH . E 3 HOH B 26 2026 2026 HOH HOH . E 3 HOH B 27 2027 2027 HOH HOH . E 3 HOH B 28 2028 2028 HOH HOH . E 3 HOH B 29 2029 2029 HOH HOH . E 3 HOH B 30 2030 2030 HOH HOH . E 3 HOH B 31 2031 2031 HOH HOH . E 3 HOH B 32 2032 2032 HOH HOH . E 3 HOH B 33 2033 2033 HOH HOH . E 3 HOH B 34 2034 2034 HOH HOH . E 3 HOH B 35 2035 2035 HOH HOH . E 3 HOH B 36 2036 2036 HOH HOH . E 3 HOH B 37 2037 2037 HOH HOH . E 3 HOH B 38 2038 2038 HOH HOH . E 3 HOH B 39 2039 2039 HOH HOH . E 3 HOH B 40 2040 2040 HOH HOH . E 3 HOH B 41 2041 2041 HOH HOH . E 3 HOH B 42 2042 2042 HOH HOH . E 3 HOH B 43 2043 2043 HOH HOH . E 3 HOH B 44 2044 2044 HOH HOH . E 3 HOH B 45 2045 2045 HOH HOH . E 3 HOH B 46 2046 2046 HOH HOH . E 3 HOH B 47 2047 2047 HOH HOH . E 3 HOH B 48 2048 2048 HOH HOH . E 3 HOH B 49 2049 2049 HOH HOH . E 3 HOH B 50 2050 2050 HOH HOH . E 3 HOH B 51 2051 2051 HOH HOH . E 3 HOH B 52 2052 2052 HOH HOH . E 3 HOH B 53 2053 2053 HOH HOH . E 3 HOH B 54 2054 2054 HOH HOH . E 3 HOH B 55 2055 2055 HOH HOH . E 3 HOH B 56 2056 2056 HOH HOH . E 3 HOH B 57 2057 2057 HOH HOH . E 3 HOH B 58 2058 2058 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 BE6 . . . C 2 16.747 22.415 8.849 1 25.66 ? C01 BE6 1100 A 1 HETATM 2 C C02 BE6 . . . C 2 18.137 22.507 8.407 1 28.03 ? C02 BE6 1100 A 1 HETATM 3 C C03 BE6 . . . C 2 19.093 21.452 8.627 1 28.67 ? C03 BE6 1100 A 1 HETATM 4 C C04 BE6 . . . C 2 18.699 20.231 9.316 1 28.68 ? C04 BE6 1100 A 1 HETATM 5 C C05 BE6 . . . C 2 17.312 20.096 9.775 1 26.8 ? C05 BE6 1100 A 1 HETATM 6 C C06 BE6 . . . C 2 16.36 21.165 9.544 1 27.59 ? C06 BE6 1100 A 1 HETATM 7 C C07 BE6 . . . C 2 10.089 24.114 2.238 1 19.45 ? C07 BE6 1100 A 1 HETATM 8 C C08 BE6 . . . C 2 8.964 23.269 2.639 1 23.9 ? C08 BE6 1100 A 1 HETATM 9 C C09 BE6 . . . C 2 7.59 23.833 2.651 1 22.04 ? C09 BE6 1100 A 1 HETATM 10 C C10 BE6 . . . C 2 7.377 25.248 2.256 1 25.04 ? C10 BE6 1100 A 1 HETATM 11 C C11 BE6 . . . C 2 8.544 26.065 1.859 1 24.86 ? C11 BE6 1100 A 1 HETATM 12 C C12 BE6 . . . C 2 9.853 25.494 1.858 1 24.96 ? C12 BE6 1100 A 1 HETATM 13 C C13 BE6 . . . C 2 11.526 23.626 2.21 1 18.72 ? C13 BE6 1100 A 1 HETATM 14 O O14 BE6 . . . C 2 12.085 23.288 3.508 1 17.62 ? O14 BE6 1100 A 1 HETATM 15 C C15 BE6 . . . C 2 12.11 24.359 4.586 1 16.47 ? C15 BE6 1100 A 1 HETATM 16 C C16 BE6 . . . C 2 13.153 24.094 5.659 1 18.83 ? C16 BE6 1100 A 1 HETATM 17 C C17 BE6 . . . C 2 14.461 23.765 5.046 1 18.65 ? C17 BE6 1100 A 1 HETATM 18 C C18 BE6 . . . C 2 15.349 23.037 6.127 1 16.85 ? C18 BE6 1100 A 1 HETATM 19 C C19 BE6 . . . C 2 15.405 21.537 5.942 1 14.89 ? C19 BE6 1100 A 1 HETATM 20 O O20 BE6 . . . C 2 14.39 20.853 6.149 1 15.48 ? O20 BE6 1100 A 1 HETATM 21 N N21 BE6 . . . C 2 16.581 20.934 5.58 1 12.82 ? N21 BE6 1100 A 1 HETATM 22 O O22 BE6 . . . C 2 14.849 23.337 7.487 1 20.8 ? O22 BE6 1100 A 1 HETATM 23 C C23 BE6 . . . C 2 15.827 23.613 8.533 1 22.12 ? C23 BE6 1100 A 1 HETATM 24 O O24 BE6 . . . C 2 15.061 25.014 4.613 1 14.08 ? O24 BE6 1100 A 1 HETATM 25 O O25 BE6 . . . C 2 13.37 25.261 6.533 1 22.25 ? O25 BE6 1100 A 1 HETATM 26 C C26 BE6 . . . C 2 10.881 24.45 5.43 1 13.83 ? C26 BE6 1100 A 1 HETATM 27 O O27 BE6 . . . C 2 10.493 23.422 6.03 1 18.52 ? O27 BE6 1100 A 1 HETATM 28 N N28 BE6 . . . C 2 10.239 25.664 5.505 1 14.78 ? N28 BE6 1100 A 1 HETATM 29 C C29 BE6 . . . C 2 9.038 25.904 6.281 1 14.53 ? C29 BE6 1100 A 1 HETATM 30 C C30 BE6 . . . C 2 9.383 26.697 7.501 1 16.82 ? C30 BE6 1100 A 1 HETATM 31 C C31 BE6 . . . C 2 8.309 27.623 7.814 1 16.79 ? C31 BE6 1100 A 1 HETATM 32 C C32 BE6 . . . C 2 10.537 26.573 8.384 1 14.38 ? C32 BE6 1100 A 1 HETATM 33 C C33 BE6 . . . C 2 10.597 27.405 9.605 1 17.23 ? C33 BE6 1100 A 1 HETATM 34 C C34 BE6 . . . C 2 9.505 28.325 9.898 1 19.14 ? C34 BE6 1100 A 1 HETATM 35 C C35 BE6 . . . C 2 7.928 26.815 5.669 1 15.79 ? C35 BE6 1100 A 1 HETATM 36 O O36 BE6 . . . C 2 8.58 27.87 4.935 1 11.51 ? O36 BE6 1100 A 1 HETATM 37 C C37 BE6 . . . C 2 8.351 28.448 9.014 1 18.24 ? C37 BE6 1100 A 1 HETATM 38 C C38 BE6 . . . C 2 7.165 27.323 6.925 1 17.03 ? C38 BE6 1100 A 1 HETATM 39 C C39 BE6 . . . C 2 16.706 19.505 5.416 1 12.63 ? C39 BE6 1100 A 1 HETATM 40 C C40 BE6 . . . C 2 16.586 19.037 3.958 1 15.72 ? C40 BE6 1100 A 1 HETATM 41 C C41 BE6 . . . C 2 17.524 17.972 3.716 1 17.27 ? C41 BE6 1100 A 1 HETATM 42 C C42 BE6 . . . C 2 15.781 19.557 2.864 1 16.06 ? C42 BE6 1100 A 1 HETATM 43 C C43 BE6 . . . C 2 15.945 18.979 1.509 1 19.67 ? C43 BE6 1100 A 1 HETATM 44 C C44 BE6 . . . C 2 16.903 17.905 1.304 1 17.53 ? C44 BE6 1100 A 1 HETATM 45 C C45 BE6 . . . C 2 18.102 18.956 5.794 1 14.11 ? C45 BE6 1100 A 1 HETATM 46 O O46 BE6 . . . C 2 19.076 19.94 5.373 1 12.98 ? O46 BE6 1100 A 1 HETATM 47 C C47 BE6 . . . C 2 17.705 17.38 2.391 1 17.17 ? C47 BE6 1100 A 1 HETATM 48 C C48 BE6 . . . C 2 18.183 17.634 5.02 1 16.02 ? C48 BE6 1100 A 1 HETATM 49 F F49 BE6 . . . C 2 8.474 27.395 1.473 1 32.2 ? F49 BE6 1100 A 1 HETATM 50 F F50 BE6 . . . C 2 20.291 21.576 8.22 1 36.88 ? F50 BE6 1100 A 1 HETATM 51 F F51 BE6 . . . C 2 14.905 21.054 10 1 28.84 ? F51 BE6 1100 A 1 HETATM 52 F F52 BE6 . . . C 2 9.155 22.127 2.962 1 23.62 ? F52 BE6 1100 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #