data_1W6M
#
_model_server_result.job_id            2n-am4VTZYqwAbW1p5-34A 
_model_server_result.datetime_utc      '2024-10-19 17:27:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1w6m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":4000}' 
#
_entry.id    1W6M 
#
_exptl.entry_id    1W6M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-galactopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1W6M 
_cell.length_a            36.776 
_cell.length_b            88.898 
_cell.length_c            93.913 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1W6M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 15 A GLU 1015 1_555 A N CSO 16 A CSO 1016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C CSO 16 A CSO 1016 1_555 A N LEU 17 A LEU 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A SG CYS 88 A CYS 1088 1_555 C S2 BME . A BME 2135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
covale ? covale4 A SG CYS 130 A CYS 1130 1_555 D S2 BME . A BME 2136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
covale ? covale5 B SG CYS 16 B CYS 2016 1_555 H S2 BME . B BME 3135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
covale ? covale6 B SG CYS 88 B CYS 2088 1_555 I S2 BME . B BME 3136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
covale ? covale7 B SG CYS 130 B CYS 2130 1_555 J S2 BME . B BME 3137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                GAL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-galactopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-galactose;D-galactose;galactose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GAL sing 106 n n 
C1 O1 GAL sing 107 n n 
C1 O5 GAL sing 108 n n 
C1 H1 GAL sing 109 n n 
C2 C3 GAL sing 110 n n 
C2 O2 GAL sing 111 n n 
C2 H2 GAL sing 112 n n 
C3 C4 GAL sing 113 n n 
C3 O3 GAL sing 114 n n 
C3 H3 GAL sing 115 n n 
C4 C5 GAL sing 116 n n 
C4 O4 GAL sing 117 n n 
C4 H4 GAL sing 118 n n 
C5 C6 GAL sing 119 n n 
C5 O5 GAL sing 120 n n 
C5 H5 GAL sing 121 n n 
C6 O6 GAL sing 122 n n 
C6 H61 GAL sing 123 n n 
C6 H62 GAL sing 124 n n 
O1 HO1 GAL sing 125 n n 
O2 HO2 GAL sing 126 n n 
O3 HO3 GAL sing 127 n n 
O4 HO4 GAL sing 128 n n 
O6 HO6 GAL sing 129 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
GAL b-D-galactopyranose 'COMMON NAME' GMML 1 
GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1W6M 
_atom_sites.fract_transf_matrix[1][1]    0.027192 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011249 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010648 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 BME A 1 2135 2135 BME BME . 
D 3 BME A 1 2136 2136 BME BME . 
E 4 SO4 A 1 2137 2137 SO4 SO4 . 
F 4 SO4 A 1 2138 2138 SO4 SO4 . 
G 5 GAL A 1 4000 4000 GAL GAL . 
H 3 BME B 1 3135 3135 BME BME . 
I 3 BME B 1 3136 3136 BME BME . 
J 3 BME B 1 3137 3137 BME BME . 
K 5 GAL B 1 4000 4000 GAL GAL . 
L 6 HOH A 1 2001 2001 HOH HOH . 
L 6 HOH A 2 2002 2002 HOH HOH . 
L 6 HOH A 3 2003 2003 HOH HOH . 
L 6 HOH A 4 2004 2004 HOH HOH . 
L 6 HOH A 5 2005 2005 HOH HOH . 
L 6 HOH A 6 2006 2006 HOH HOH . 
L 6 HOH A 7 2007 2007 HOH HOH . 
L 6 HOH A 8 2008 2008 HOH HOH . 
L 6 HOH A 9 2009 2009 HOH HOH . 
L 6 HOH A 10 2010 2010 HOH HOH . 
L 6 HOH A 11 2011 2011 HOH HOH . 
L 6 HOH A 12 2012 2012 HOH HOH . 
L 6 HOH A 13 2013 2013 HOH HOH . 
L 6 HOH A 14 2014 2014 HOH HOH . 
L 6 HOH A 15 2015 2015 HOH HOH . 
L 6 HOH A 16 2016 2016 HOH HOH . 
L 6 HOH A 17 2017 2017 HOH HOH . 
L 6 HOH A 18 2018 2018 HOH HOH . 
L 6 HOH A 19 2019 2019 HOH HOH . 
L 6 HOH A 20 2020 2020 HOH HOH . 
L 6 HOH A 21 2021 2021 HOH HOH . 
L 6 HOH A 22 2022 2022 HOH HOH . 
L 6 HOH A 23 2023 2023 HOH HOH . 
L 6 HOH A 24 2024 2024 HOH HOH . 
L 6 HOH A 25 2025 2025 HOH HOH . 
L 6 HOH A 26 2026 2026 HOH HOH . 
L 6 HOH A 27 2027 2027 HOH HOH . 
L 6 HOH A 28 2028 2028 HOH HOH . 
L 6 HOH A 29 2029 2029 HOH HOH . 
L 6 HOH A 30 2030 2030 HOH HOH . 
L 6 HOH A 31 2031 2031 HOH HOH . 
L 6 HOH A 32 2032 2032 HOH HOH . 
L 6 HOH A 33 2033 2033 HOH HOH . 
L 6 HOH A 34 2034 2034 HOH HOH . 
L 6 HOH A 35 2035 2035 HOH HOH . 
L 6 HOH A 36 2036 2036 HOH HOH . 
L 6 HOH A 37 2037 2037 HOH HOH . 
L 6 HOH A 38 2038 2038 HOH HOH . 
L 6 HOH A 39 2039 2039 HOH HOH . 
L 6 HOH A 40 2040 2040 HOH HOH . 
L 6 HOH A 41 2041 2041 HOH HOH . 
L 6 HOH A 42 2042 2042 HOH HOH . 
L 6 HOH A 43 2043 2043 HOH HOH . 
L 6 HOH A 44 2044 2044 HOH HOH . 
L 6 HOH A 45 2045 2045 HOH HOH . 
L 6 HOH A 46 2046 2046 HOH HOH . 
L 6 HOH A 47 2047 2047 HOH HOH . 
L 6 HOH A 48 2048 2048 HOH HOH . 
L 6 HOH A 49 2049 2049 HOH HOH . 
L 6 HOH A 50 2050 2050 HOH HOH . 
L 6 HOH A 51 2051 2051 HOH HOH . 
L 6 HOH A 52 2052 2052 HOH HOH . 
M 6 HOH B 1 5001 5001 HOH HOH . 
M 6 HOH B 2 5002 5002 HOH HOH . 
M 6 HOH B 3 5003 5003 HOH HOH . 
M 6 HOH B 4 5004 5004 HOH HOH . 
M 6 HOH B 5 5005 5005 HOH HOH . 
M 6 HOH B 6 5006 5006 HOH HOH . 
M 6 HOH B 7 5007 5007 HOH HOH . 
M 6 HOH B 8 5008 5008 HOH HOH . 
M 6 HOH B 9 5009 5009 HOH HOH . 
M 6 HOH B 10 5010 5010 HOH HOH . 
M 6 HOH B 11 5011 5011 HOH HOH . 
M 6 HOH B 12 5012 5012 HOH HOH . 
M 6 HOH B 13 5013 5013 HOH HOH . 
M 6 HOH B 14 5014 5014 HOH HOH . 
M 6 HOH B 15 5015 5015 HOH HOH . 
M 6 HOH B 16 5016 5016 HOH HOH . 
M 6 HOH B 17 5017 5017 HOH HOH . 
M 6 HOH B 18 5018 5018 HOH HOH . 
M 6 HOH B 19 5019 5019 HOH HOH . 
M 6 HOH B 20 5020 5020 HOH HOH . 
M 6 HOH B 21 5021 5021 HOH HOH . 
M 6 HOH B 22 5022 5022 HOH HOH . 
M 6 HOH B 23 5023 5023 HOH HOH . 
M 6 HOH B 24 5024 5024 HOH HOH . 
M 6 HOH B 25 5025 5025 HOH HOH . 
M 6 HOH B 26 5026 5026 HOH HOH . 
M 6 HOH B 27 5027 5027 HOH HOH . 
M 6 HOH B 28 5028 5028 HOH HOH . 
M 6 HOH B 29 5029 5029 HOH HOH . 
M 6 HOH B 30 5030 5030 HOH HOH . 
M 6 HOH B 31 5031 5031 HOH HOH . 
M 6 HOH B 32 5032 5032 HOH HOH . 
M 6 HOH B 33 5033 5033 HOH HOH . 
M 6 HOH B 34 5034 5034 HOH HOH . 
M 6 HOH B 35 5035 5035 HOH HOH . 
M 6 HOH B 36 5036 5036 HOH HOH . 
M 6 HOH B 37 5037 5037 HOH HOH . 
M 6 HOH B 38 5038 5038 HOH HOH . 
M 6 HOH B 39 5039 5039 HOH HOH . 
M 6 HOH B 40 5040 5040 HOH HOH . 
M 6 HOH B 41 5041 5041 HOH HOH . 
M 6 HOH B 42 5042 5042 HOH HOH . 
M 6 HOH B 43 5043 5043 HOH HOH . 
M 6 HOH B 44 5044 5044 HOH HOH . 
M 6 HOH B 45 5045 5045 HOH HOH . 
M 6 HOH B 46 5046 5046 HOH HOH . 
M 6 HOH B 47 5047 5047 HOH HOH . 
M 6 HOH B 48 5048 5048 HOH HOH . 
M 6 HOH B 49 5049 5049 HOH HOH . 
M 6 HOH B 50 5050 5050 HOH HOH . 
M 6 HOH B 51 5051 5051 HOH HOH . 
M 6 HOH B 52 5052 5052 HOH HOH . 
M 6 HOH B 53 5053 5053 HOH HOH . 
M 6 HOH B 54 5054 5054 HOH HOH . 
M 6 HOH B 55 5055 5055 HOH HOH . 
M 6 HOH B 56 5056 5056 HOH HOH . 
M 6 HOH B 57 5057 5057 HOH HOH . 
M 6 HOH B 58 5058 5058 HOH HOH . 
M 6 HOH B 59 5059 5059 HOH HOH . 
M 6 HOH B 60 5060 5060 HOH HOH . 
M 6 HOH B 61 5061 5061 HOH HOH . 
M 6 HOH B 62 5062 5062 HOH HOH . 
M 6 HOH B 63 5063 5063 HOH HOH . 
M 6 HOH B 64 5064 5064 HOH HOH . 
M 6 HOH B 65 5065 5065 HOH HOH . 
M 6 HOH B 66 5066 5066 HOH HOH . 
M 6 HOH B 67 5067 5067 HOH HOH . 
M 6 HOH B 68 5068 5068 HOH HOH . 
M 6 HOH B 69 5069 5069 HOH HOH . 
M 6 HOH B 70 5070 5070 HOH HOH . 
M 6 HOH B 71 5071 5071 HOH HOH . 
M 6 HOH B 72 5072 5072 HOH HOH . 
M 6 HOH B 73 5073 5073 HOH HOH . 
M 6 HOH B 74 5074 5074 HOH HOH . 
M 6 HOH B 75 5075 5075 HOH HOH . 
M 6 HOH B 76 5076 5076 HOH HOH . 
M 6 HOH B 77 5077 5077 HOH HOH . 
M 6 HOH B 78 5078 5078 HOH HOH . 
M 6 HOH B 79 5079 5079 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GAL . . . G 5 -0.634 60.419 24.575 1 66.62 ? C1 GAL 4000 A 1 
HETATM 2 C C2 GAL . . . G 5 -0.657 58.919 24.819 1 67.11 ? C2 GAL 4000 A 1 
HETATM 3 C C3 GAL . . . G 5 0.133 58.664 26.124 1 67 ? C3 GAL 4000 A 1 
HETATM 4 C C4 GAL . . . G 5 1.568 59.193 25.903 1 64.96 ? C4 GAL 4000 A 1 
HETATM 5 C C5 GAL . . . G 5 1.499 60.716 25.574 1 63.06 ? C5 GAL 4000 A 1 
HETATM 6 C C6 GAL . . . G 5 2.86 61.322 25.31 1 60.97 ? C6 GAL 4000 A 1 
HETATM 7 O O1 GAL . . . G 5 -1.309 60.679 23.431 1 66.71 ? O1 GAL 4000 A 1 
HETATM 8 O O2 GAL . . . G 5 -1.922 58.446 25.011 1 67.65 ? O2 GAL 4000 A 1 
HETATM 9 O O3 GAL . . . G 5 0.165 57.277 26.415 1 68.48 ? O3 GAL 4000 A 1 
HETATM 10 O O4 GAL . . . G 5 2.184 58.495 24.809 1 63.08 ? O4 GAL 4000 A 1 
HETATM 11 O O5 GAL . . . G 5 0.644 60.933 24.397 1 64.8 ? O5 GAL 4000 A 1 
HETATM 12 O O6 GAL . . . G 5 2.784 62.718 25.052 1 55.74 ? O6 GAL 4000 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#