data_1W6P
#
_model_server_result.job_id            1-scxXVbu_0Up2840cmTyw 
_model_server_result.datetime_utc      '2024-11-22 16:04:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1w6p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2137}' 
#
_entry.id    1W6P 
#
_exptl.entry_id    1W6P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BETA-MERCAPTOETHANOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1W6P 
_cell.length_a            36.76 
_cell.length_b            88.1 
_cell.length_c            93.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1W6P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   3 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   GAL 
_pdbx_entity_branch_link.comp_id_2                   NDG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NDG 1 C 1 NDG A 4000 NDG 
3 n C GAL 2 C 2 GAL A 4001 GAL 
3 n D NDG 1 D 1 NDG B 4000 NDG 
3 n D GAL 2 D 2 GAL B 4001 GAL 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 15 A GLU 1015 1_555 A N CSO 16 A CSO 1016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C CSO 16 A CSO 1016 1_555 A N LEU 17 A LEU 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A SG CYS 88 A CYS 1088 1_555 E S2 BME . A BME 2137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
covale ? covale4 A SG CYS 130 A CYS 1130 1_555 F S2 BME . A BME 2138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
covale ? covale5 B SG CYS 16 B CYS 2016 1_555 H S2 BME . B BME 3138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
covale ? covale6 B SG CYS 88 B CYS 2088 1_555 I S2 BME . B BME 3139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
covale ? covale7 C O4 NDG . C NDG 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? 
covale ? covale8 D O4 NDG . D NDG 1 1_555 D C1 GAL . D GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                BME 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BETA-MERCAPTOETHANOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BME sing 70 n n 
C1 O1 BME sing 71 n n 
C1 H11 BME sing 72 n n 
C1 H12 BME sing 73 n n 
C2 S2 BME sing 74 n n 
C2 H21 BME sing 75 n n 
C2 H22 BME sing 76 n n 
O1 HO1 BME sing 77 n n 
S2 HS2 BME sing 78 n n 
#
_atom_sites.entry_id                     1W6P 
_atom_sites.fract_transf_matrix[1][1]    0.027203 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011351 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01065 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 BME A 1 2137 2137 BME BME . 
F 4 BME A 1 2138 2138 BME BME . 
G 5 SO4 B 1 3135 3135 SO4 SO4 . 
H 4 BME B 1 3138 3138 BME BME . 
I 4 BME B 1 3139 3139 BME BME . 
J 4 BME B 1 3140 3140 BME BME . 
K 6 HOH A 1 2001 2001 HOH HOH . 
K 6 HOH A 2 2002 2002 HOH HOH . 
K 6 HOH A 3 2003 2003 HOH HOH . 
K 6 HOH A 4 2004 2004 HOH HOH . 
K 6 HOH A 5 2005 2005 HOH HOH . 
K 6 HOH A 6 2006 2006 HOH HOH . 
K 6 HOH A 7 2007 2007 HOH HOH . 
K 6 HOH A 8 2008 2008 HOH HOH . 
K 6 HOH A 9 2009 2009 HOH HOH . 
K 6 HOH A 10 2010 2010 HOH HOH . 
K 6 HOH A 11 2011 2011 HOH HOH . 
K 6 HOH A 12 2012 2012 HOH HOH . 
K 6 HOH A 13 2013 2013 HOH HOH . 
K 6 HOH A 14 2014 2014 HOH HOH . 
K 6 HOH A 15 2015 2015 HOH HOH . 
K 6 HOH A 16 2016 2016 HOH HOH . 
K 6 HOH A 17 2017 2017 HOH HOH . 
K 6 HOH A 18 2018 2018 HOH HOH . 
K 6 HOH A 19 2019 2019 HOH HOH . 
K 6 HOH A 20 2020 2020 HOH HOH . 
K 6 HOH A 21 2021 2021 HOH HOH . 
K 6 HOH A 22 2022 2022 HOH HOH . 
K 6 HOH A 23 2023 2023 HOH HOH . 
K 6 HOH A 24 2024 2024 HOH HOH . 
K 6 HOH A 25 2025 2025 HOH HOH . 
K 6 HOH A 26 2026 2026 HOH HOH . 
K 6 HOH A 27 2027 2027 HOH HOH . 
K 6 HOH A 28 2028 2028 HOH HOH . 
K 6 HOH A 29 2029 2029 HOH HOH . 
K 6 HOH A 30 2030 2030 HOH HOH . 
K 6 HOH A 31 2031 2031 HOH HOH . 
K 6 HOH A 32 2032 2032 HOH HOH . 
K 6 HOH A 33 2033 2033 HOH HOH . 
K 6 HOH A 34 2034 2034 HOH HOH . 
K 6 HOH A 35 2035 2035 HOH HOH . 
K 6 HOH A 36 2036 2036 HOH HOH . 
K 6 HOH A 37 2037 2037 HOH HOH . 
K 6 HOH A 38 2038 2038 HOH HOH . 
K 6 HOH A 39 2039 2039 HOH HOH . 
K 6 HOH A 40 2040 2040 HOH HOH . 
K 6 HOH A 41 2041 2041 HOH HOH . 
K 6 HOH A 42 2042 2042 HOH HOH . 
K 6 HOH A 43 2043 2043 HOH HOH . 
K 6 HOH A 44 2044 2044 HOH HOH . 
K 6 HOH A 45 2045 2045 HOH HOH . 
K 6 HOH A 46 2046 2046 HOH HOH . 
K 6 HOH A 47 2047 2047 HOH HOH . 
K 6 HOH A 48 2048 2048 HOH HOH . 
K 6 HOH A 49 2049 2049 HOH HOH . 
K 6 HOH A 50 2050 2050 HOH HOH . 
K 6 HOH A 51 2051 2051 HOH HOH . 
K 6 HOH A 52 2052 2052 HOH HOH . 
K 6 HOH A 53 2053 2053 HOH HOH . 
K 6 HOH A 54 2054 2054 HOH HOH . 
K 6 HOH A 55 2055 2055 HOH HOH . 
K 6 HOH A 56 2056 2056 HOH HOH . 
K 6 HOH A 57 2057 2057 HOH HOH . 
K 6 HOH A 58 2058 2058 HOH HOH . 
K 6 HOH A 59 2059 2059 HOH HOH . 
K 6 HOH A 60 2060 2060 HOH HOH . 
K 6 HOH A 61 2061 2061 HOH HOH . 
K 6 HOH A 62 2062 2062 HOH HOH . 
K 6 HOH A 63 2063 2063 HOH HOH . 
K 6 HOH A 64 2064 2064 HOH HOH . 
K 6 HOH A 65 2065 2065 HOH HOH . 
K 6 HOH A 66 2066 2066 HOH HOH . 
K 6 HOH A 67 2067 2067 HOH HOH . 
K 6 HOH A 68 2068 2068 HOH HOH . 
K 6 HOH A 69 2069 2069 HOH HOH . 
K 6 HOH A 70 2070 2070 HOH HOH . 
K 6 HOH A 71 2071 2071 HOH HOH . 
K 6 HOH A 72 2072 2072 HOH HOH . 
K 6 HOH A 73 2073 2073 HOH HOH . 
K 6 HOH A 74 2074 2074 HOH HOH . 
K 6 HOH A 75 2075 2075 HOH HOH . 
K 6 HOH A 76 2076 2076 HOH HOH . 
K 6 HOH A 77 2077 2077 HOH HOH . 
K 6 HOH A 78 2078 2078 HOH HOH . 
K 6 HOH A 79 2079 2079 HOH HOH . 
K 6 HOH A 80 2080 2080 HOH HOH . 
K 6 HOH A 81 2081 2081 HOH HOH . 
L 6 HOH B 1 5001 5001 HOH HOH . 
L 6 HOH B 2 5002 5002 HOH HOH . 
L 6 HOH B 3 5003 5003 HOH HOH . 
L 6 HOH B 4 5004 5004 HOH HOH . 
L 6 HOH B 5 5005 5005 HOH HOH . 
L 6 HOH B 6 5006 5006 HOH HOH . 
L 6 HOH B 7 5007 5007 HOH HOH . 
L 6 HOH B 8 5008 5008 HOH HOH . 
L 6 HOH B 9 5009 5009 HOH HOH . 
L 6 HOH B 10 5010 5010 HOH HOH . 
L 6 HOH B 11 5011 5011 HOH HOH . 
L 6 HOH B 12 5012 5012 HOH HOH . 
L 6 HOH B 13 5013 5013 HOH HOH . 
L 6 HOH B 14 5014 5014 HOH HOH . 
L 6 HOH B 15 5015 5015 HOH HOH . 
L 6 HOH B 16 5016 5016 HOH HOH . 
L 6 HOH B 17 5017 5017 HOH HOH . 
L 6 HOH B 18 5018 5018 HOH HOH . 
L 6 HOH B 19 5019 5019 HOH HOH . 
L 6 HOH B 20 5020 5020 HOH HOH . 
L 6 HOH B 21 5021 5021 HOH HOH . 
L 6 HOH B 22 5022 5022 HOH HOH . 
L 6 HOH B 23 5023 5023 HOH HOH . 
L 6 HOH B 24 5024 5024 HOH HOH . 
L 6 HOH B 25 5025 5025 HOH HOH . 
L 6 HOH B 26 5026 5026 HOH HOH . 
L 6 HOH B 27 5027 5027 HOH HOH . 
L 6 HOH B 28 5028 5028 HOH HOH . 
L 6 HOH B 29 5029 5029 HOH HOH . 
L 6 HOH B 30 5030 5030 HOH HOH . 
L 6 HOH B 31 5031 5031 HOH HOH . 
L 6 HOH B 32 5032 5032 HOH HOH . 
L 6 HOH B 33 5033 5033 HOH HOH . 
L 6 HOH B 34 5034 5034 HOH HOH . 
L 6 HOH B 35 5035 5035 HOH HOH . 
L 6 HOH B 36 5036 5036 HOH HOH . 
L 6 HOH B 37 5037 5037 HOH HOH . 
L 6 HOH B 38 5038 5038 HOH HOH . 
L 6 HOH B 39 5039 5039 HOH HOH . 
L 6 HOH B 40 5040 5040 HOH HOH . 
L 6 HOH B 41 5041 5041 HOH HOH . 
L 6 HOH B 42 5042 5042 HOH HOH . 
L 6 HOH B 43 5043 5043 HOH HOH . 
L 6 HOH B 44 5044 5044 HOH HOH . 
L 6 HOH B 45 5045 5045 HOH HOH . 
L 6 HOH B 46 5046 5046 HOH HOH . 
L 6 HOH B 47 5047 5047 HOH HOH . 
L 6 HOH B 48 5048 5048 HOH HOH . 
L 6 HOH B 49 5049 5049 HOH HOH . 
L 6 HOH B 50 5050 5050 HOH HOH . 
L 6 HOH B 51 5051 5051 HOH HOH . 
L 6 HOH B 52 5052 5052 HOH HOH . 
L 6 HOH B 53 5053 5053 HOH HOH . 
L 6 HOH B 54 5054 5054 HOH HOH . 
L 6 HOH B 55 5055 5055 HOH HOH . 
L 6 HOH B 56 5056 5056 HOH HOH . 
L 6 HOH B 57 5057 5057 HOH HOH . 
L 6 HOH B 58 5058 5058 HOH HOH . 
L 6 HOH B 59 5059 5059 HOH HOH . 
L 6 HOH B 60 5060 5060 HOH HOH . 
L 6 HOH B 61 5061 5061 HOH HOH . 
L 6 HOH B 62 5062 5062 HOH HOH . 
L 6 HOH B 63 5063 5063 HOH HOH . 
L 6 HOH B 64 5064 5064 HOH HOH . 
L 6 HOH B 65 5065 5065 HOH HOH . 
L 6 HOH B 66 5066 5066 HOH HOH . 
L 6 HOH B 67 5067 5067 HOH HOH . 
L 6 HOH B 68 5068 5068 HOH HOH . 
L 6 HOH B 69 5069 5069 HOH HOH . 
L 6 HOH B 70 5070 5070 HOH HOH . 
L 6 HOH B 71 5071 5071 HOH HOH . 
L 6 HOH B 72 5072 5072 HOH HOH . 
L 6 HOH B 73 5073 5073 HOH HOH . 
L 6 HOH B 74 5074 5074 HOH HOH . 
L 6 HOH B 75 5075 5075 HOH HOH . 
L 6 HOH B 76 5076 5076 HOH HOH . 
L 6 HOH B 77 5077 5077 HOH HOH . 
L 6 HOH B 78 5078 5078 HOH HOH . 
L 6 HOH B 79 5079 5079 HOH HOH . 
L 6 HOH B 80 5080 5080 HOH HOH . 
L 6 HOH B 81 5081 5081 HOH HOH . 
L 6 HOH B 82 5082 5082 HOH HOH . 
L 6 HOH B 83 5083 5083 HOH HOH . 
L 6 HOH B 84 5084 5084 HOH HOH . 
L 6 HOH B 85 5085 5085 HOH HOH . 
L 6 HOH B 86 5086 5086 HOH HOH . 
L 6 HOH B 87 5087 5087 HOH HOH . 
L 6 HOH B 88 5088 5088 HOH HOH . 
L 6 HOH B 89 5089 5089 HOH HOH . 
L 6 HOH B 90 5090 5090 HOH HOH . 
L 6 HOH B 91 5091 5091 HOH HOH . 
L 6 HOH B 92 5092 5092 HOH HOH . 
L 6 HOH B 93 5093 5093 HOH HOH . 
L 6 HOH B 94 5094 5094 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BME . . . E 4 19.82 48.746 16.229 1 25.69 ? C1 BME 2137 A 1 
HETATM 2 C C2 BME . . . E 4 20.494 50.082 16.515 1 24.7 ? C2 BME 2137 A 1 
HETATM 3 O O1 BME . . . E 4 20.66 47.881 15.491 1 26.65 ? O1 BME 2137 A 1 
HETATM 4 S S2 BME . . . E 4 22.13 49.916 17.29 1 23.42 ? S2 BME 2137 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#