data_1W76 # _model_server_result.job_id f01VA6xRZZqPwsT9KeZddQ _model_server_result.datetime_utc '2024-11-05 15:24:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1w76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1538}' # _entry.id 1W76 # _exptl.entry_id 1W76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.354 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (-)-GALANTHAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1W76 _cell.length_a 91.223 _cell.length_b 105.253 _cell.length_c 150.559 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W76 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 67 A CYS 67 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 254 A CYS 254 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 402 A CYS 402 1_555 A SG CYS 521 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf4 B SG CYS 67 B CYS 67 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 B SG CYS 254 B CYS 254 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 B SG CYS 402 B CYS 402 1_555 B SG CYS 521 B CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 59 A ASN 59 1_555 C C1 NAG . A NAG 1536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 A ND2 ASN 416 A ASN 416 1_555 D C1 NAG . A NAG 1537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 B ND2 ASN 59 B ASN 59 1_555 F C1 NAG . B NAG 1536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 B ND2 ASN 416 B ASN 416 1_555 G C1 NAG . B NAG 1537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? # _chem_comp.formula 'C17 H21 N O3' _chem_comp.formula_weight 287.354 _chem_comp.id GNT _chem_comp.mon_nstd_flag . _chem_comp.name (-)-GALANTHAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GNT doub 129 n n C1 C42 GNT sing 130 n n C1 H1 GNT sing 131 n n C2 C3 GNT sing 132 n n C2 H2 GNT sing 133 n n C3 C4 GNT sing 134 n n C3 O18 GNT sing 135 n n C3 H3 GNT sing 136 n n C4 C41 GNT sing 137 n n C4 H41A GNT sing 138 n n C4 H42 GNT sing 139 n n C41 C42 GNT sing 140 n n C41 O5 GNT sing 141 n n C41 H41 GNT sing 142 n n C42 C12 GNT sing 143 n n C42 C14 GNT sing 144 n n O5 C13 GNT sing 145 n n C6 C7 GNT doub 146 n y C6 C13 GNT sing 147 n y C6 O17 GNT sing 148 n n C7 C8 GNT sing 149 n y C7 H7 GNT sing 150 n n C8 C15 GNT doub 151 n y C8 H8 GNT sing 152 n n C9 N10 GNT sing 153 n n C9 C15 GNT sing 154 n n C9 H91 GNT sing 155 n n C9 H92 GNT sing 156 n n N10 C11 GNT sing 157 n n N10 C19 GNT sing 158 n n C11 C12 GNT sing 159 n n C11 H111 GNT sing 160 n n C11 H112 GNT sing 161 n n C12 H121 GNT sing 162 n n C12 H122 GNT sing 163 n n C13 C14 GNT doub 164 n y C14 C15 GNT sing 165 n y C16 O17 GNT sing 166 n n C16 H161 GNT sing 167 n n C16 H162 GNT sing 168 n n C16 H163 GNT sing 169 n n O18 H18 GNT sing 170 n n C19 H191 GNT sing 171 n n C19 H192 GNT sing 172 n n C19 H193 GNT sing 173 n n # _atom_sites.entry_id 1W76 _atom_sites.fract_transf_matrix[1][1] 0.010962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1536 1536 NAG NAG . D 2 NAG A 1 1537 1537 NAG NAG . E 3 GNT A 1 1538 1538 GNT GNT . F 2 NAG B 1 1536 1536 NAG NAG . G 2 NAG B 1 1537 1537 NAG NAG . H 3 GNT B 1 1538 1538 GNT GNT . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2012 2012 HOH HOH . I 4 HOH A 13 2013 2013 HOH HOH . I 4 HOH A 14 2014 2014 HOH HOH . I 4 HOH A 15 2015 2015 HOH HOH . I 4 HOH A 16 2016 2016 HOH HOH . I 4 HOH A 17 2017 2017 HOH HOH . I 4 HOH A 18 2018 2018 HOH HOH . I 4 HOH A 19 2019 2019 HOH HOH . I 4 HOH A 20 2020 2020 HOH HOH . I 4 HOH A 21 2021 2021 HOH HOH . I 4 HOH A 22 2022 2022 HOH HOH . I 4 HOH A 23 2023 2023 HOH HOH . I 4 HOH A 24 2024 2024 HOH HOH . I 4 HOH A 25 2025 2025 HOH HOH . I 4 HOH A 26 2026 2026 HOH HOH . I 4 HOH A 27 2027 2027 HOH HOH . I 4 HOH A 28 2028 2028 HOH HOH . I 4 HOH A 29 2029 2029 HOH HOH . I 4 HOH A 30 2030 2030 HOH HOH . I 4 HOH A 31 2031 2031 HOH HOH . I 4 HOH A 32 2032 2032 HOH HOH . I 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH A 34 2034 2034 HOH HOH . I 4 HOH A 35 2035 2035 HOH HOH . I 4 HOH A 36 2036 2036 HOH HOH . I 4 HOH A 37 2037 2037 HOH HOH . I 4 HOH A 38 2038 2038 HOH HOH . I 4 HOH A 39 2039 2039 HOH HOH . I 4 HOH A 40 2040 2040 HOH HOH . I 4 HOH A 41 2041 2041 HOH HOH . I 4 HOH A 42 2042 2042 HOH HOH . I 4 HOH A 43 2043 2043 HOH HOH . I 4 HOH A 44 2044 2044 HOH HOH . I 4 HOH A 45 2045 2045 HOH HOH . I 4 HOH A 46 2046 2046 HOH HOH . I 4 HOH A 47 2047 2047 HOH HOH . I 4 HOH A 48 2048 2048 HOH HOH . I 4 HOH A 49 2049 2049 HOH HOH . I 4 HOH A 50 2050 2050 HOH HOH . I 4 HOH A 51 2051 2051 HOH HOH . I 4 HOH A 52 2052 2052 HOH HOH . I 4 HOH A 53 2053 2053 HOH HOH . I 4 HOH A 54 2054 2054 HOH HOH . J 4 HOH B 1 2001 2001 HOH HOH . J 4 HOH B 2 2002 2002 HOH HOH . J 4 HOH B 3 2003 2003 HOH HOH . J 4 HOH B 4 2004 2004 HOH HOH . J 4 HOH B 5 2005 2005 HOH HOH . J 4 HOH B 6 2006 2006 HOH HOH . J 4 HOH B 7 2007 2007 HOH HOH . J 4 HOH B 8 2008 2008 HOH HOH . J 4 HOH B 9 2009 2009 HOH HOH . J 4 HOH B 10 2010 2010 HOH HOH . J 4 HOH B 11 2011 2011 HOH HOH . J 4 HOH B 12 2012 2012 HOH HOH . J 4 HOH B 13 2013 2013 HOH HOH . J 4 HOH B 14 2014 2014 HOH HOH . J 4 HOH B 15 2015 2015 HOH HOH . J 4 HOH B 16 2016 2016 HOH HOH . J 4 HOH B 17 2017 2017 HOH HOH . J 4 HOH B 18 2018 2018 HOH HOH . J 4 HOH B 19 2019 2019 HOH HOH . J 4 HOH B 20 2020 2020 HOH HOH . J 4 HOH B 21 2021 2021 HOH HOH . J 4 HOH B 22 2022 2022 HOH HOH . J 4 HOH B 23 2023 2023 HOH HOH . J 4 HOH B 24 2024 2024 HOH HOH . J 4 HOH B 25 2025 2025 HOH HOH . J 4 HOH B 26 2026 2026 HOH HOH . J 4 HOH B 27 2027 2027 HOH HOH . J 4 HOH B 28 2028 2028 HOH HOH . J 4 HOH B 29 2029 2029 HOH HOH . J 4 HOH B 30 2030 2030 HOH HOH . J 4 HOH B 31 2031 2031 HOH HOH . J 4 HOH B 32 2032 2032 HOH HOH . J 4 HOH B 33 2033 2033 HOH HOH . J 4 HOH B 34 2034 2034 HOH HOH . J 4 HOH B 35 2035 2035 HOH HOH . J 4 HOH B 36 2036 2036 HOH HOH . J 4 HOH B 37 2037 2037 HOH HOH . J 4 HOH B 38 2038 2038 HOH HOH . J 4 HOH B 39 2039 2039 HOH HOH . J 4 HOH B 40 2040 2040 HOH HOH . J 4 HOH B 41 2041 2041 HOH HOH . J 4 HOH B 42 2042 2042 HOH HOH . J 4 HOH B 43 2043 2043 HOH HOH . J 4 HOH B 44 2044 2044 HOH HOH . J 4 HOH B 45 2045 2045 HOH HOH . J 4 HOH B 46 2046 2046 HOH HOH . J 4 HOH B 47 2047 2047 HOH HOH . J 4 HOH B 48 2048 2048 HOH HOH . J 4 HOH B 49 2049 2049 HOH HOH . J 4 HOH B 50 2050 2050 HOH HOH . J 4 HOH B 51 2051 2051 HOH HOH . J 4 HOH B 52 2052 2052 HOH HOH . J 4 HOH B 53 2053 2053 HOH HOH . J 4 HOH B 54 2054 2054 HOH HOH . J 4 HOH B 55 2055 2055 HOH HOH . J 4 HOH B 56 2056 2056 HOH HOH . J 4 HOH B 57 2057 2057 HOH HOH . J 4 HOH B 58 2058 2058 HOH HOH . J 4 HOH B 59 2059 2059 HOH HOH . J 4 HOH B 60 2060 2060 HOH HOH . J 4 HOH B 61 2061 2061 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GNT . . . E 3 93.026 49.492 19.846 1 44.43 ? C1 GNT 1538 A 1 HETATM 2 C C2 GNT . . . E 3 91.86 48.888 19.454 1 44.77 ? C2 GNT 1538 A 1 HETATM 3 C C3 GNT . . . E 3 91.069 47.926 20.381 1 44.29 ? C3 GNT 1538 A 1 HETATM 4 C C4 GNT . . . E 3 91.965 47.378 21.594 1 43.85 ? C4 GNT 1538 A 1 HETATM 5 C C41 GNT . . . E 3 92.695 48.584 22.203 1 45.21 ? C41 GNT 1538 A 1 HETATM 6 C C42 GNT . . . E 3 93.726 49.176 21.218 1 46.44 ? C42 GNT 1538 A 1 HETATM 7 O O5 GNT . . . E 3 91.828 49.698 22.624 1 45.63 ? O5 GNT 1538 A 1 HETATM 8 C C6 GNT . . . E 3 92.653 51.899 23.441 1 45.48 ? C6 GNT 1538 A 1 HETATM 9 C C7 GNT . . . E 3 93.732 52.819 23.395 1 45.66 ? C7 GNT 1538 A 1 HETATM 10 C C8 GNT . . . E 3 94.899 52.534 22.633 1 46 ? C8 GNT 1538 A 1 HETATM 11 C C9 GNT . . . E 3 96.303 51.146 21.114 1 47.81 ? C9 GNT 1538 A 1 HETATM 12 N N10 GNT . . . E 3 96.709 50.165 20.322 1 50.74 ? N10 GNT 1538 A 1 HETATM 13 C C11 GNT . . . E 3 95.974 48.923 19.932 1 48.2 ? C11 GNT 1538 A 1 HETATM 14 C C12 GNT . . . E 3 94.958 48.277 20.921 1 46.82 ? C12 GNT 1538 A 1 HETATM 15 C C13 GNT . . . E 3 92.792 50.73 22.699 1 45.09 ? C13 GNT 1538 A 1 HETATM 16 C C14 GNT . . . E 3 93.951 50.452 21.928 1 46.54 ? C14 GNT 1538 A 1 HETATM 17 C C15 GNT . . . E 3 95.037 51.348 21.886 1 46.46 ? C15 GNT 1538 A 1 HETATM 18 C C16 GNT . . . E 3 91.624 52.647 25.521 1 46.56 ? C16 GNT 1538 A 1 HETATM 19 O O17 GNT . . . E 3 91.458 52.082 24.207 1 46.27 ? O17 GNT 1538 A 1 HETATM 20 O O18 GNT . . . E 3 89.998 48.729 20.877 1 40.37 ? O18 GNT 1538 A 1 HETATM 21 C C19 GNT . . . E 3 98.06 50.292 19.787 1 50.51 ? C19 GNT 1538 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #