data_1W7Z
#
_model_server_result.job_id            DlsmmdiTFT0o-3lUJ96N1Q 
_model_server_result.datetime_utc      '2025-03-02 22:02:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1w7z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1032}' 
#
_entry.id    1W7Z 
#
_exptl.entry_id    1W7Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.8 
_cell.angle_gamma         90 
_cell.entry_id            1W7Z 
_cell.length_a            71.16 
_cell.length_b            82.34 
_cell.length_c            62.93 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1W7Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS hexameric 6 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
PQS monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,I,J,K,L,M,N,O,P,Q,R,S,T 1 1 
G,U 2 1 
H,V 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 19 A CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf2 A SG CYS 9 A CYS 9 1_555 A SG CYS 21 A CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 A SG CYS 15 A CYS 15 1_555 A SG CYS 27 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 B SG CYS 2 B CYS 2 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
disulf ? disulf5 B SG CYS 9 B CYS 9 1_555 B SG CYS 21 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
disulf ? disulf6 B SG CYS 15 B CYS 15 1_555 B SG CYS 27 B CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
disulf ? disulf7 C SG CYS 2 C CYS 2 1_555 C SG CYS 19 C CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
disulf ? disulf8 C SG CYS 9 C CYS 9 1_555 C SG CYS 21 C CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf9 C SG CYS 15 C CYS 15 1_555 C SG CYS 27 C CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
disulf ? disulf10 D SG CYS 2 D CYS 2 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf11 D SG CYS 9 D CYS 9 1_555 D SG CYS 21 D CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
disulf ? disulf12 D SG CYS 15 D CYS 15 1_555 D SG CYS 27 D CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf13 E SG CYS 2 E CYS 2 1_555 E SG CYS 19 E CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf14 E SG CYS 9 E CYS 9 1_555 E SG CYS 21 E CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf15 E SG CYS 15 E CYS 15 1_555 E SG CYS 27 E CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf16 F SG CYS 2 F CYS 2 1_555 F SG CYS 19 F CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
disulf ? disulf17 F SG CYS 9 F CYS 9 1_555 F SG CYS 21 F CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
disulf ? disulf18 F SG CYS 15 F CYS 15 1_555 F SG CYS 27 F CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf19 G SG CYS 2 G CYS 2 1_555 G SG CYS 19 G CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf20 G SG CYS 9 G CYS 9 1_555 G SG CYS 21 G CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf21 G SG CYS 15 G CYS 15 1_555 G SG CYS 27 G CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
disulf ? disulf22 H SG CYS 2 H CYS 2 1_555 H SG CYS 19 H CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf23 H SG CYS 9 H CYS 9 1_555 H SG CYS 21 H CYS 21 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf24 H SG CYS 9 H CYS 9 1_555 H SG CYS 21 H CYS 21 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.745 ? 
disulf ? disulf25 H SG CYS 15 H CYS 15 1_555 H SG CYS 27 H CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc1 A O SER 13 A SER 13 1_555 I NA NA . A NA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc2 A O CYS 15 A CYS 15 1_555 I NA NA . A NA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc3 I NA NA . A NA 1032 1_555 B O SER 13 B SER 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc4 I NA NA . A NA 1032 1_555 B O CYS 15 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc5 C O SER 13 C SER 13 1_555 K NA NA . C NA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc6 C O CYS 15 C CYS 15 1_555 K NA NA . C NA 1032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc7 K NA NA . C NA 1032 1_555 D O SER 13 D SER 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc8 K NA NA . C NA 1032 1_555 D O CYS 15 D CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc9 E O SER 13 E SER 13 1_555 M NA NA . E NA 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc10 E O CYS 15 E CYS 15 1_555 M NA NA . E NA 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc11 M NA NA . E NA 1031 1_555 F O SER 13 F SER 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc12 M NA NA . E NA 1031 1_555 F O CYS 15 F CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1W7Z 
_atom_sites.fract_transf_matrix[1][1]    0.014053 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007726 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012145 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018134 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NA A 1 1032 1032 NA NA . 
J 3 FMT B 1 1032 1032 FMT FMT . 
K 2 NA C 1 1032 1032 NA NA . 
L 3 FMT D 1 1032 1032 FMT FMT . 
M 2 NA E 1 1031 1031 NA NA . 
N 3 FMT F 1 1032 1032 FMT FMT . 
O 4 HOH A 1 2001 2001 HOH HOH . 
O 4 HOH A 2 2002 2002 HOH HOH . 
O 4 HOH A 3 2003 2003 HOH HOH . 
O 4 HOH A 4 2004 2004 HOH HOH . 
O 4 HOH A 5 2005 2005 HOH HOH . 
O 4 HOH A 6 2006 2006 HOH HOH . 
O 4 HOH A 7 2007 2007 HOH HOH . 
O 4 HOH A 8 2008 2008 HOH HOH . 
O 4 HOH A 9 2009 2009 HOH HOH . 
O 4 HOH A 10 2010 2010 HOH HOH . 
O 4 HOH A 11 2011 2011 HOH HOH . 
O 4 HOH A 12 2012 2012 HOH HOH . 
O 4 HOH A 13 2013 2013 HOH HOH . 
O 4 HOH A 14 2014 2014 HOH HOH . 
O 4 HOH A 15 2015 2015 HOH HOH . 
O 4 HOH A 16 2016 2016 HOH HOH . 
O 4 HOH A 17 2017 2017 HOH HOH . 
O 4 HOH A 18 2018 2018 HOH HOH . 
P 4 HOH B 1 2001 2001 HOH HOH . 
P 4 HOH B 2 2002 2002 HOH HOH . 
P 4 HOH B 3 2003 2003 HOH HOH . 
P 4 HOH B 4 2004 2004 HOH HOH . 
P 4 HOH B 5 2005 2005 HOH HOH . 
P 4 HOH B 6 2006 2006 HOH HOH . 
P 4 HOH B 7 2007 2007 HOH HOH . 
P 4 HOH B 8 2008 2008 HOH HOH . 
P 4 HOH B 9 2009 2009 HOH HOH . 
P 4 HOH B 10 2010 2010 HOH HOH . 
P 4 HOH B 11 2011 2011 HOH HOH . 
P 4 HOH B 12 2012 2012 HOH HOH . 
P 4 HOH B 13 2013 2013 HOH HOH . 
P 4 HOH B 14 2014 2014 HOH HOH . 
P 4 HOH B 15 2015 2015 HOH HOH . 
P 4 HOH B 16 2016 2016 HOH HOH . 
P 4 HOH B 17 2017 2017 HOH HOH . 
P 4 HOH B 18 2018 2018 HOH HOH . 
P 4 HOH B 19 2019 2019 HOH HOH . 
P 4 HOH B 20 2020 2020 HOH HOH . 
P 4 HOH B 21 2021 2021 HOH HOH . 
P 4 HOH B 22 2022 2022 HOH HOH . 
Q 4 HOH C 1 2001 2001 HOH HOH . 
Q 4 HOH C 2 2002 2002 HOH HOH . 
Q 4 HOH C 3 2003 2003 HOH HOH . 
Q 4 HOH C 4 2004 2004 HOH HOH . 
Q 4 HOH C 5 2005 2005 HOH HOH . 
Q 4 HOH C 6 2006 2006 HOH HOH . 
Q 4 HOH C 7 2007 2007 HOH HOH . 
Q 4 HOH C 8 2008 2008 HOH HOH . 
Q 4 HOH C 9 2009 2009 HOH HOH . 
Q 4 HOH C 10 2010 2010 HOH HOH . 
Q 4 HOH C 11 2011 2011 HOH HOH . 
Q 4 HOH C 12 2012 2012 HOH HOH . 
Q 4 HOH C 13 2013 2013 HOH HOH . 
Q 4 HOH C 14 2014 2014 HOH HOH . 
R 4 HOH D 1 2001 2001 HOH HOH . 
R 4 HOH D 2 2002 2002 HOH HOH . 
R 4 HOH D 3 2003 2003 HOH HOH . 
R 4 HOH D 4 2004 2004 HOH HOH . 
R 4 HOH D 5 2005 2005 HOH HOH . 
R 4 HOH D 6 2006 2006 HOH HOH . 
R 4 HOH D 7 2007 2007 HOH HOH . 
R 4 HOH D 8 2008 2008 HOH HOH . 
R 4 HOH D 9 2009 2009 HOH HOH . 
R 4 HOH D 10 2010 2010 HOH HOH . 
R 4 HOH D 11 2011 2011 HOH HOH . 
R 4 HOH D 12 2012 2012 HOH HOH . 
R 4 HOH D 13 2013 2013 HOH HOH . 
R 4 HOH D 14 2014 2014 HOH HOH . 
R 4 HOH D 15 2015 2015 HOH HOH . 
R 4 HOH D 16 2016 2016 HOH HOH . 
R 4 HOH D 17 2017 2017 HOH HOH . 
R 4 HOH D 18 2018 2018 HOH HOH . 
R 4 HOH D 19 2019 2019 HOH HOH . 
R 4 HOH D 20 2020 2020 HOH HOH . 
R 4 HOH D 21 2021 2021 HOH HOH . 
R 4 HOH D 22 2022 2022 HOH HOH . 
R 4 HOH D 23 2023 2023 HOH HOH . 
R 4 HOH D 24 2024 2024 HOH HOH . 
R 4 HOH D 25 2025 2025 HOH HOH . 
S 4 HOH E 1 2001 2001 HOH HOH . 
S 4 HOH E 2 2002 2002 HOH HOH . 
S 4 HOH E 3 2003 2003 HOH HOH . 
S 4 HOH E 4 2004 2004 HOH HOH . 
S 4 HOH E 5 2005 2005 HOH HOH . 
S 4 HOH E 6 2006 2006 HOH HOH . 
S 4 HOH E 7 2007 2007 HOH HOH . 
S 4 HOH E 8 2008 2008 HOH HOH . 
S 4 HOH E 9 2009 2009 HOH HOH . 
S 4 HOH E 10 2010 2010 HOH HOH . 
S 4 HOH E 11 2011 2011 HOH HOH . 
S 4 HOH E 12 2012 2012 HOH HOH . 
S 4 HOH E 13 2013 2013 HOH HOH . 
S 4 HOH E 14 2014 2014 HOH HOH . 
T 4 HOH F 1 2001 2001 HOH HOH . 
T 4 HOH F 2 2002 2002 HOH HOH . 
T 4 HOH F 3 2003 2003 HOH HOH . 
T 4 HOH F 4 2004 2004 HOH HOH . 
T 4 HOH F 5 2005 2005 HOH HOH . 
T 4 HOH F 6 2006 2006 HOH HOH . 
T 4 HOH F 7 2007 2007 HOH HOH . 
T 4 HOH F 8 2008 2008 HOH HOH . 
T 4 HOH F 9 2009 2009 HOH HOH . 
T 4 HOH F 10 2010 2010 HOH HOH . 
T 4 HOH F 11 2011 2011 HOH HOH . 
T 4 HOH F 12 2012 2012 HOH HOH . 
T 4 HOH F 13 2013 2013 HOH HOH . 
T 4 HOH F 14 2014 2014 HOH HOH . 
T 4 HOH F 15 2015 2015 HOH HOH . 
T 4 HOH F 16 2016 2016 HOH HOH . 
T 4 HOH F 17 2017 2017 HOH HOH . 
T 4 HOH F 18 2018 2018 HOH HOH . 
T 4 HOH F 19 2019 2019 HOH HOH . 
U 4 HOH G 1 2001 2001 HOH HOH . 
U 4 HOH G 2 2002 2002 HOH HOH . 
U 4 HOH G 3 2003 2003 HOH HOH . 
U 4 HOH G 4 2004 2004 HOH HOH . 
U 4 HOH G 5 2005 2005 HOH HOH . 
U 4 HOH G 6 2006 2006 HOH HOH . 
V 4 HOH H 1 2001 2001 HOH HOH . 
V 4 HOH H 2 2002 2002 HOH HOH . 
V 4 HOH H 3 2003 2003 HOH HOH . 
V 4 HOH H 4 2004 2004 HOH HOH . 
V 4 HOH H 5 2005 2005 HOH HOH . 
V 4 HOH H 6 2006 2006 HOH HOH . 
V 4 HOH H 7 2007 2007 HOH HOH . 
V 4 HOH H 8 2008 2008 HOH HOH . 
V 4 HOH H 9 2009 2009 HOH HOH . 
V 4 HOH H 10 2010 2010 HOH HOH . 
V 4 HOH H 11 2011 2011 HOH HOH . 
V 4 HOH H 12 2012 2012 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               29.182 
_atom_site.Cartn_y               7.56 
_atom_site.Cartn_z               1.658 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        29.22 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1032 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#