data_1W8B
#
_model_server_result.job_id            ljKsPvf9NHUypYNrTyaLhA 
_model_server_result.datetime_utc      '2024-12-26 20:13:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1w8b 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1258}' 
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_entry.id    1W8B 
#
_exptl.entry_id    1W8B 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1W8B 
_cell.length_a            82.846 
_cell.length_b            82.846 
_cell.length_c            147.768 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1W8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
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_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 H CYS 22 1_555 A SG CYS 12 H CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 26 H CYS 42 1_555 A SG CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf3 A SG CYS 110 H CYS 122 1_555 B SG CYS 48 L CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 A SG CYS 158 H CYS 168 1_555 A SG CYS 177 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 A SG CYS 188 H CYS 191 1_555 A SG CYS 216 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf6 B SG CYS 4 L CYS 91 1_555 B SG CYS 15 L CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf7 B SG CYS 11 L CYS 98 1_555 B SG CYS 25 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf8 B SG CYS 27 L CYS 114 1_555 B SG CYS 40 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A OE1 GLU 58 H GLU 70 1_555 C CA CA . H CA 1258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc2 A O ASP 60 H ASP 72 1_555 C CA CA . H CA 1258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc3 A O GLU 63 H GLU 75 1_555 C CA CA . H CA 1258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc4 A OE2 GLU 68 H GLU 80 1_555 C CA CA . H CA 1258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc5 C CA CA . H CA 1258 1_555 E O HOH . H HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     1W8B 
_atom_sites.fract_transf_matrix[1][1]    0.012071 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012071 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006767 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA H 1 1258 1258 CA CA . 
D 4 413 H 1 1259 1259 413 413 . 
E 5 HOH H 1 2001 2001 HOH HOH . 
E 5 HOH H 2 2002 2002 HOH HOH . 
E 5 HOH H 3 2003 2003 HOH HOH . 
E 5 HOH H 4 2004 2004 HOH HOH . 
E 5 HOH H 5 2005 2005 HOH HOH . 
E 5 HOH H 6 2006 2006 HOH HOH . 
E 5 HOH H 7 2007 2007 HOH HOH . 
E 5 HOH H 8 2008 2008 HOH HOH . 
E 5 HOH H 9 2009 2009 HOH HOH . 
E 5 HOH H 10 2010 2010 HOH HOH . 
E 5 HOH H 11 2011 2011 HOH HOH . 
E 5 HOH H 12 2012 2012 HOH HOH . 
E 5 HOH H 13 2013 2013 HOH HOH . 
E 5 HOH H 14 2014 2014 HOH HOH . 
E 5 HOH H 15 2015 2015 HOH HOH . 
E 5 HOH H 16 2016 2016 HOH HOH . 
E 5 HOH H 17 2017 2017 HOH HOH . 
E 5 HOH H 18 2018 2018 HOH HOH . 
E 5 HOH H 19 2019 2019 HOH HOH . 
E 5 HOH H 20 2020 2020 HOH HOH . 
E 5 HOH H 21 2021 2021 HOH HOH . 
E 5 HOH H 22 2022 2022 HOH HOH . 
E 5 HOH H 23 2023 2023 HOH HOH . 
E 5 HOH H 24 2024 2024 HOH HOH . 
E 5 HOH H 25 2025 2025 HOH HOH . 
E 5 HOH H 26 2026 2026 HOH HOH . 
E 5 HOH H 27 2027 2027 HOH HOH . 
E 5 HOH H 28 2028 2028 HOH HOH . 
E 5 HOH H 29 2029 2029 HOH HOH . 
E 5 HOH H 30 2030 2030 HOH HOH . 
E 5 HOH H 31 2031 2031 HOH HOH . 
E 5 HOH H 32 2032 2032 HOH HOH . 
E 5 HOH H 33 2033 2033 HOH HOH . 
E 5 HOH H 34 2034 2034 HOH HOH . 
E 5 HOH H 35 2035 2035 HOH HOH . 
E 5 HOH H 36 2036 2036 HOH HOH . 
E 5 HOH H 37 2037 2037 HOH HOH . 
E 5 HOH H 38 2038 2038 HOH HOH . 
E 5 HOH H 39 2039 2039 HOH HOH . 
E 5 HOH H 40 2040 2040 HOH HOH . 
E 5 HOH H 41 2041 2041 HOH HOH . 
E 5 HOH H 42 2042 2042 HOH HOH . 
E 5 HOH H 43 2043 2043 HOH HOH . 
E 5 HOH H 44 2044 2044 HOH HOH . 
E 5 HOH H 45 2045 2045 HOH HOH . 
E 5 HOH H 46 2046 2046 HOH HOH . 
E 5 HOH H 47 2047 2047 HOH HOH . 
E 5 HOH H 48 2048 2048 HOH HOH . 
F 5 HOH L 1 2001 2001 HOH HOH . 
F 5 HOH L 2 2002 2002 HOH HOH . 
F 5 HOH L 3 2003 2003 HOH HOH . 
F 5 HOH L 4 2004 2004 HOH HOH . 
F 5 HOH L 5 2005 2005 HOH HOH . 
F 5 HOH L 6 2006 2006 HOH HOH . 
F 5 HOH L 7 2007 2007 HOH HOH . 
F 5 HOH L 8 2008 2008 HOH HOH . 
F 5 HOH L 9 2009 2009 HOH HOH . 
F 5 HOH L 10 2010 2010 HOH HOH . 
F 5 HOH L 11 2011 2011 HOH HOH . 
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_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -10.103 
_atom_site.Cartn_y               35.173 
_atom_site.Cartn_z               51.116 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.41 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1258 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
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_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#