data_1W8K
#
_model_server_result.job_id            4hX7R3y9dMeLw09KonWjrw 
_model_server_result.datetime_utc      '2024-11-23 03:51:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1w8k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1476}' 
#
_entry.id    1W8K 
#
_exptl.entry_id    1W8K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.18 
_cell.angle_gamma         90 
_cell.entry_id            1W8K 
_cell.length_a            150.03 
_cell.length_b            53.76 
_cell.length_c            60.29 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1W8K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 94 1_555 A SG CYS 207 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 122 A CYS 162 1_555 A SG CYS 152 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
disulf ? disulf3 A SG CYS 168 A CYS 208 1_555 A SG CYS 180 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 225 A CYS 265 1_555 A SG CYS 323 A CYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
disulf ? disulf5 A SG CYS 242 A CYS 282 1_555 A SG CYS 314 A CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
disulf ? disulf6 A SG CYS 348 A CYS 388 1_555 A SG CYS 404 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf7 A SG CYS 392 A CYS 432 1_555 A SG CYS 409 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 A SG CYS 394 A CYS 434 1_555 A SG CYS 411 A CYS 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 173 n y 
N1 C5 IMD sing 174 n y 
N1 HN1 IMD sing 175 n n 
C2 N3 IMD doub 176 n y 
C2 H2 IMD sing 177 n n 
N3 C4 IMD sing 178 n y 
N3 HN3 IMD sing 179 n n 
C4 C5 IMD doub 180 n y 
C4 H4 IMD sing 181 n n 
C5 H5 IMD sing 182 n n 
#
_atom_sites.entry_id                     1W8K 
_atom_sites.fract_transf_matrix[1][1]    0.006665 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002854 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018601 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018043 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IMD A 1 1476 1476 IMD IMD . 
C 3 HOH A 1 2001 2001 HOH HOH . 
C 3 HOH A 2 2002 2002 HOH HOH . 
C 3 HOH A 3 2003 2003 HOH HOH . 
C 3 HOH A 4 2004 2004 HOH HOH . 
C 3 HOH A 5 2005 2005 HOH HOH . 
C 3 HOH A 6 2006 2006 HOH HOH . 
C 3 HOH A 7 2007 2007 HOH HOH . 
C 3 HOH A 8 2008 2008 HOH HOH . 
C 3 HOH A 9 2009 2009 HOH HOH . 
C 3 HOH A 10 2010 2010 HOH HOH . 
C 3 HOH A 11 2011 2011 HOH HOH . 
C 3 HOH A 12 2012 2012 HOH HOH . 
C 3 HOH A 13 2013 2013 HOH HOH . 
C 3 HOH A 14 2014 2014 HOH HOH . 
C 3 HOH A 15 2015 2015 HOH HOH . 
C 3 HOH A 16 2016 2016 HOH HOH . 
C 3 HOH A 17 2017 2017 HOH HOH . 
C 3 HOH A 18 2018 2018 HOH HOH . 
C 3 HOH A 19 2019 2019 HOH HOH . 
C 3 HOH A 20 2020 2020 HOH HOH . 
C 3 HOH A 21 2021 2021 HOH HOH . 
C 3 HOH A 22 2022 2022 HOH HOH . 
C 3 HOH A 23 2023 2023 HOH HOH . 
C 3 HOH A 24 2024 2024 HOH HOH . 
C 3 HOH A 25 2025 2025 HOH HOH . 
C 3 HOH A 26 2026 2026 HOH HOH . 
C 3 HOH A 27 2027 2027 HOH HOH . 
C 3 HOH A 28 2028 2028 HOH HOH . 
C 3 HOH A 29 2029 2029 HOH HOH . 
C 3 HOH A 30 2030 2030 HOH HOH . 
C 3 HOH A 31 2031 2031 HOH HOH . 
C 3 HOH A 32 2032 2032 HOH HOH . 
C 3 HOH A 33 2033 2033 HOH HOH . 
C 3 HOH A 34 2034 2034 HOH HOH . 
C 3 HOH A 35 2035 2035 HOH HOH . 
C 3 HOH A 36 2036 2036 HOH HOH . 
C 3 HOH A 37 2037 2037 HOH HOH . 
C 3 HOH A 38 2038 2038 HOH HOH . 
C 3 HOH A 39 2039 2039 HOH HOH . 
C 3 HOH A 40 2040 2040 HOH HOH . 
C 3 HOH A 41 2041 2041 HOH HOH . 
C 3 HOH A 42 2042 2042 HOH HOH . 
C 3 HOH A 43 2043 2043 HOH HOH . 
C 3 HOH A 44 2044 2044 HOH HOH . 
C 3 HOH A 45 2045 2045 HOH HOH . 
C 3 HOH A 46 2046 2046 HOH HOH . 
C 3 HOH A 47 2047 2047 HOH HOH . 
C 3 HOH A 48 2048 2048 HOH HOH . 
C 3 HOH A 49 2049 2049 HOH HOH . 
C 3 HOH A 50 2050 2050 HOH HOH . 
C 3 HOH A 51 2051 2051 HOH HOH . 
C 3 HOH A 52 2052 2052 HOH HOH . 
C 3 HOH A 53 2053 2053 HOH HOH . 
C 3 HOH A 54 2054 2054 HOH HOH . 
C 3 HOH A 55 2055 2055 HOH HOH . 
C 3 HOH A 56 2056 2056 HOH HOH . 
C 3 HOH A 57 2057 2057 HOH HOH . 
C 3 HOH A 58 2058 2058 HOH HOH . 
C 3 HOH A 59 2059 2059 HOH HOH . 
C 3 HOH A 60 2060 2060 HOH HOH . 
C 3 HOH A 61 2061 2061 HOH HOH . 
C 3 HOH A 62 2062 2062 HOH HOH . 
C 3 HOH A 63 2063 2063 HOH HOH . 
C 3 HOH A 64 2064 2064 HOH HOH . 
C 3 HOH A 65 2065 2065 HOH HOH . 
C 3 HOH A 66 2066 2066 HOH HOH . 
C 3 HOH A 67 2067 2067 HOH HOH . 
C 3 HOH A 68 2068 2068 HOH HOH . 
C 3 HOH A 69 2069 2069 HOH HOH . 
C 3 HOH A 70 2070 2070 HOH HOH . 
C 3 HOH A 71 2071 2071 HOH HOH . 
C 3 HOH A 72 2072 2072 HOH HOH . 
C 3 HOH A 73 2073 2073 HOH HOH . 
C 3 HOH A 74 2074 2074 HOH HOH . 
C 3 HOH A 75 2075 2075 HOH HOH . 
C 3 HOH A 76 2076 2076 HOH HOH . 
C 3 HOH A 77 2077 2077 HOH HOH . 
C 3 HOH A 78 2078 2078 HOH HOH . 
C 3 HOH A 79 2079 2079 HOH HOH . 
C 3 HOH A 80 2080 2080 HOH HOH . 
C 3 HOH A 81 2081 2081 HOH HOH . 
C 3 HOH A 82 2082 2082 HOH HOH . 
C 3 HOH A 83 2083 2083 HOH HOH . 
C 3 HOH A 84 2084 2084 HOH HOH . 
C 3 HOH A 85 2085 2085 HOH HOH . 
C 3 HOH A 86 2086 2086 HOH HOH . 
C 3 HOH A 87 2087 2087 HOH HOH . 
C 3 HOH A 88 2088 2088 HOH HOH . 
C 3 HOH A 89 2089 2089 HOH HOH . 
C 3 HOH A 90 2090 2090 HOH HOH . 
C 3 HOH A 91 2091 2091 HOH HOH . 
C 3 HOH A 92 2092 2092 HOH HOH . 
C 3 HOH A 93 2093 2093 HOH HOH . 
C 3 HOH A 94 2094 2094 HOH HOH . 
C 3 HOH A 95 2095 2095 HOH HOH . 
C 3 HOH A 96 2096 2096 HOH HOH . 
C 3 HOH A 97 2097 2097 HOH HOH . 
C 3 HOH A 98 2098 2098 HOH HOH . 
C 3 HOH A 99 2099 2099 HOH HOH . 
C 3 HOH A 100 2100 2100 HOH HOH . 
C 3 HOH A 101 2101 2101 HOH HOH . 
C 3 HOH A 102 2102 2102 HOH HOH . 
C 3 HOH A 103 2103 2103 HOH HOH . 
C 3 HOH A 104 2104 2104 HOH HOH . 
C 3 HOH A 105 2105 2105 HOH HOH . 
C 3 HOH A 106 2106 2106 HOH HOH . 
C 3 HOH A 107 2107 2107 HOH HOH . 
C 3 HOH A 108 2108 2108 HOH HOH . 
C 3 HOH A 109 2109 2109 HOH HOH . 
C 3 HOH A 110 2110 2110 HOH HOH . 
C 3 HOH A 111 2111 2111 HOH HOH . 
C 3 HOH A 112 2112 2112 HOH HOH . 
C 3 HOH A 113 2113 2113 HOH HOH . 
C 3 HOH A 114 2114 2114 HOH HOH . 
C 3 HOH A 115 2115 2115 HOH HOH . 
C 3 HOH A 116 2116 2116 HOH HOH . 
C 3 HOH A 117 2117 2117 HOH HOH . 
C 3 HOH A 118 2118 2118 HOH HOH . 
C 3 HOH A 119 2119 2119 HOH HOH . 
C 3 HOH A 120 2120 2120 HOH HOH . 
C 3 HOH A 121 2121 2121 HOH HOH . 
C 3 HOH A 122 2122 2122 HOH HOH . 
C 3 HOH A 123 2123 2123 HOH HOH . 
C 3 HOH A 124 2124 2124 HOH HOH . 
C 3 HOH A 125 2125 2125 HOH HOH . 
C 3 HOH A 126 2126 2126 HOH HOH . 
C 3 HOH A 127 2127 2127 HOH HOH . 
C 3 HOH A 128 2128 2128 HOH HOH . 
C 3 HOH A 129 2129 2129 HOH HOH . 
C 3 HOH A 130 2130 2130 HOH HOH . 
C 3 HOH A 131 2131 2131 HOH HOH . 
C 3 HOH A 132 2132 2132 HOH HOH . 
C 3 HOH A 133 2133 2133 HOH HOH . 
C 3 HOH A 134 2134 2134 HOH HOH . 
C 3 HOH A 135 2135 2135 HOH HOH . 
C 3 HOH A 136 2136 2136 HOH HOH . 
C 3 HOH A 137 2137 2137 HOH HOH . 
C 3 HOH A 138 2138 2138 HOH HOH . 
C 3 HOH A 139 2139 2139 HOH HOH . 
C 3 HOH A 140 2140 2140 HOH HOH . 
C 3 HOH A 141 2141 2141 HOH HOH . 
C 3 HOH A 142 2142 2142 HOH HOH . 
C 3 HOH A 143 2143 2143 HOH HOH . 
C 3 HOH A 144 2144 2144 HOH HOH . 
C 3 HOH A 145 2145 2145 HOH HOH . 
C 3 HOH A 146 2146 2146 HOH HOH . 
C 3 HOH A 147 2147 2147 HOH HOH . 
C 3 HOH A 148 2148 2148 HOH HOH . 
C 3 HOH A 149 2149 2149 HOH HOH . 
C 3 HOH A 150 2150 2150 HOH HOH . 
C 3 HOH A 151 2151 2151 HOH HOH . 
C 3 HOH A 152 2152 2152 HOH HOH . 
C 3 HOH A 153 2153 2153 HOH HOH . 
C 3 HOH A 154 2154 2154 HOH HOH . 
C 3 HOH A 155 2155 2155 HOH HOH . 
C 3 HOH A 156 2156 2156 HOH HOH . 
C 3 HOH A 157 2157 2157 HOH HOH . 
C 3 HOH A 158 2158 2158 HOH HOH . 
C 3 HOH A 159 2159 2159 HOH HOH . 
C 3 HOH A 160 2160 2160 HOH HOH . 
C 3 HOH A 161 2161 2161 HOH HOH . 
C 3 HOH A 162 2162 2162 HOH HOH . 
C 3 HOH A 163 2163 2163 HOH HOH . 
C 3 HOH A 164 2164 2164 HOH HOH . 
C 3 HOH A 165 2165 2165 HOH HOH . 
C 3 HOH A 166 2166 2166 HOH HOH . 
C 3 HOH A 167 2167 2167 HOH HOH . 
C 3 HOH A 168 2168 2168 HOH HOH . 
C 3 HOH A 169 2169 2169 HOH HOH . 
C 3 HOH A 170 2170 2170 HOH HOH . 
C 3 HOH A 171 2171 2171 HOH HOH . 
C 3 HOH A 172 2172 2172 HOH HOH . 
C 3 HOH A 173 2173 2173 HOH HOH . 
C 3 HOH A 174 2174 2174 HOH HOH . 
C 3 HOH A 175 2175 2175 HOH HOH . 
C 3 HOH A 176 2176 2176 HOH HOH . 
C 3 HOH A 177 2177 2177 HOH HOH . 
C 3 HOH A 178 2178 2178 HOH HOH . 
C 3 HOH A 179 2179 2179 HOH HOH . 
C 3 HOH A 180 2180 2180 HOH HOH . 
C 3 HOH A 181 2181 2181 HOH HOH . 
C 3 HOH A 182 2182 2182 HOH HOH . 
C 3 HOH A 183 2183 2183 HOH HOH . 
C 3 HOH A 184 2184 2184 HOH HOH . 
C 3 HOH A 185 2185 2185 HOH HOH . 
C 3 HOH A 186 2186 2186 HOH HOH . 
C 3 HOH A 187 2187 2187 HOH HOH . 
C 3 HOH A 188 2188 2188 HOH HOH . 
C 3 HOH A 189 2189 2189 HOH HOH . 
C 3 HOH A 190 2190 2190 HOH HOH . 
C 3 HOH A 191 2191 2191 HOH HOH . 
C 3 HOH A 192 2192 2192 HOH HOH . 
C 3 HOH A 193 2193 2193 HOH HOH . 
C 3 HOH A 194 2194 2194 HOH HOH . 
C 3 HOH A 195 2195 2195 HOH HOH . 
C 3 HOH A 196 2196 2196 HOH HOH . 
C 3 HOH A 197 2197 2197 HOH HOH . 
C 3 HOH A 198 2198 2198 HOH HOH . 
C 3 HOH A 199 2199 2199 HOH HOH . 
C 3 HOH A 200 2200 2200 HOH HOH . 
C 3 HOH A 201 2201 2201 HOH HOH . 
C 3 HOH A 202 2202 2202 HOH HOH . 
C 3 HOH A 203 2203 2203 HOH HOH . 
C 3 HOH A 204 2204 2204 HOH HOH . 
C 3 HOH A 205 2205 2205 HOH HOH . 
C 3 HOH A 206 2206 2206 HOH HOH . 
C 3 HOH A 207 2207 2207 HOH HOH . 
C 3 HOH A 208 2208 2208 HOH HOH . 
C 3 HOH A 209 2209 2209 HOH HOH . 
C 3 HOH A 210 2210 2210 HOH HOH . 
C 3 HOH A 211 2211 2211 HOH HOH . 
C 3 HOH A 212 2212 2212 HOH HOH . 
C 3 HOH A 213 2213 2213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . B 2 30.048 -5.254 9.029 1 19.21 ? N1 IMD 1476 A 1 
HETATM 2 C C2 IMD . . . B 2 30.562 -5.81 10.192 1 29.78 ? C2 IMD 1476 A 1 
HETATM 3 N N3 IMD . . . B 2 31.039 -4.768 10.904 1 21.72 ? N3 IMD 1476 A 1 
HETATM 4 C C4 IMD . . . B 2 30.907 -3.604 10.276 1 25.44 ? C4 IMD 1476 A 1 
HETATM 5 C C5 IMD . . . B 2 30.217 -3.909 9.076 1 18.77 ? C5 IMD 1476 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           5 
#