data_1WAF # _model_server_result.job_id gtMEVKVRqY6q3OXM2vvzFA _model_server_result.datetime_utc '2024-10-16 10:36:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1waf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1WAF # _exptl.entry_id 1WAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.57 _cell.angle_gamma 90 _cell.entry_id 1WAF _cell.length_a 88.32 _cell.length_b 196.86 _cell.length_c 118.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H13 N5 O5' _chem_comp.formula_weight 283.241 _chem_comp.id GMP _chem_comp.mon_nstd_flag . _chem_comp.name GUANOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' GMP sing 129 n n O5' HO5' GMP sing 130 n n C5' C4' GMP sing 131 n n C5' "H5'1" GMP sing 132 n n C5' "H5'2" GMP sing 133 n n C4' O4' GMP sing 134 n n C4' C3' GMP sing 135 n n C4' H4' GMP sing 136 n n O4' C1' GMP sing 137 n n C3' O3' GMP sing 138 n n C3' C2' GMP sing 139 n n C3' H3' GMP sing 140 n n O3' HO3' GMP sing 141 n n C2' O2' GMP sing 142 n n C2' C1' GMP sing 143 n n C2' H2' GMP sing 144 n n O2' HO2' GMP sing 145 n n C1' N9 GMP sing 146 n n C1' H1' GMP sing 147 n n N9 C8 GMP sing 148 n y N9 C4 GMP sing 149 n y C8 N7 GMP doub 150 n y C8 H8 GMP sing 151 n n N7 C5 GMP sing 152 n y C5 C6 GMP sing 153 n n C5 C4 GMP doub 154 n y C6 O6 GMP doub 155 n n C6 N1 GMP sing 156 n n N1 C2 GMP sing 157 n n N1 HN1 GMP sing 158 n n C2 N2 GMP sing 159 n n C2 N3 GMP doub 160 n n N2 HN21 GMP sing 161 n n N2 HN22 GMP sing 162 n n N3 C4 GMP sing 163 n n # _atom_sites.entry_id 1WAF _atom_sites.fract_transf_matrix[1][1] 0.011322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000508 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GMP A 1 999 999 GMP GMP . D 2 GMP B 1 999 999 GMP GMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' GMP . . . C 2 -14.273 -12.469 5.265 1 84.8 ? O5' GMP 999 A 1 HETATM 2 C C5' GMP . . . C 2 -14.72 -13.853 5.187 1 84.14 ? C5' GMP 999 A 1 HETATM 3 C C4' GMP . . . C 2 -13.647 -14.877 5.709 1 83.68 ? C4' GMP 999 A 1 HETATM 4 O O4' GMP . . . C 2 -12.374 -14.869 4.95 1 83.32 ? O4' GMP 999 A 1 HETATM 5 C C3' GMP . . . C 2 -13.311 -14.496 7.192 1 83.48 ? C3' GMP 999 A 1 HETATM 6 O O3' GMP . . . C 2 -13.037 -15.703 7.933 1 83.58 ? O3' GMP 999 A 1 HETATM 7 C C2' GMP . . . C 2 -12.006 -13.682 6.993 1 83.29 ? C2' GMP 999 A 1 HETATM 8 O O2' GMP . . . C 2 -11.344 -13.667 8.305 1 83.15 ? O2' GMP 999 A 1 HETATM 9 C C1' GMP . . . C 2 -11.298 -14.507 5.833 1 82.93 ? C1' GMP 999 A 1 HETATM 10 N N9 GMP . . . C 2 -10.288 -13.698 5.098 1 82.4 ? N9 GMP 999 A 1 HETATM 11 C C8 GMP . . . C 2 -8.942 -14.008 5.003 1 82.37 ? C8 GMP 999 A 1 HETATM 12 N N7 GMP . . . C 2 -8.197 -13.066 4.481 1 82.27 ? N7 GMP 999 A 1 HETATM 13 C C5 GMP . . . C 2 -9.127 -12.045 4.191 1 82.35 ? C5 GMP 999 A 1 HETATM 14 C C6 GMP . . . C 2 -8.895 -10.737 3.586 1 82.35 ? C6 GMP 999 A 1 HETATM 15 O O6 GMP . . . C 2 -7.796 -10.331 3.135 1 82.48 ? O6 GMP 999 A 1 HETATM 16 N N1 GMP . . . C 2 -10.128 -9.97 3.458 1 82.21 ? N1 GMP 999 A 1 HETATM 17 C C2 GMP . . . C 2 -11.41 -10.421 3.847 1 82.01 ? C2 GMP 999 A 1 HETATM 18 N N2 GMP . . . C 2 -12.472 -9.585 3.652 1 81.74 ? N2 GMP 999 A 1 HETATM 19 N N3 GMP . . . C 2 -11.578 -11.667 4.402 1 82.04 ? N3 GMP 999 A 1 HETATM 20 C C4 GMP . . . C 2 -10.423 -12.418 4.554 1 82.2 ? C4 GMP 999 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #