data_1WAJ # _model_server_result.job_id zVItL0REnIQXG6vT2CC7aQ _model_server_result.datetime_utc '2024-11-15 07:51:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1waj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":904}' # _entry.id 1WAJ # _exptl.entry_id 1WAJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WAJ _cell.length_a 81.41 _cell.length_b 117.6 _cell.length_c 199.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WAJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1WAJ _atom_sites.fract_transf_matrix[1][1] 0.012284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP A 1 904 901 5GP 5GP . C 3 HOH A 1 905 1 HOH HOH . C 3 HOH A 2 906 2 HOH HOH . C 3 HOH A 3 907 3 HOH HOH . C 3 HOH A 4 908 4 HOH HOH . C 3 HOH A 5 909 5 HOH HOH . C 3 HOH A 6 910 6 HOH HOH . C 3 HOH A 7 911 7 HOH HOH . C 3 HOH A 8 912 8 HOH HOH . C 3 HOH A 9 913 9 HOH HOH . C 3 HOH A 10 914 10 HOH HOH . C 3 HOH A 11 915 11 HOH HOH . C 3 HOH A 12 916 12 HOH HOH . C 3 HOH A 13 917 13 HOH HOH . C 3 HOH A 14 918 14 HOH HOH . C 3 HOH A 15 919 15 HOH HOH . C 3 HOH A 16 920 16 HOH HOH . C 3 HOH A 17 921 17 HOH HOH . C 3 HOH A 18 922 18 HOH HOH . C 3 HOH A 19 923 19 HOH HOH . C 3 HOH A 20 924 20 HOH HOH . C 3 HOH A 21 925 21 HOH HOH . C 3 HOH A 22 926 22 HOH HOH . C 3 HOH A 23 927 23 HOH HOH . C 3 HOH A 24 928 24 HOH HOH . C 3 HOH A 25 929 25 HOH HOH . C 3 HOH A 26 930 26 HOH HOH . C 3 HOH A 27 931 27 HOH HOH . C 3 HOH A 28 932 28 HOH HOH . C 3 HOH A 29 933 29 HOH HOH . C 3 HOH A 30 934 30 HOH HOH . C 3 HOH A 31 935 31 HOH HOH . C 3 HOH A 32 936 32 HOH HOH . C 3 HOH A 33 937 33 HOH HOH . C 3 HOH A 34 938 34 HOH HOH . C 3 HOH A 35 939 35 HOH HOH . C 3 HOH A 36 940 36 HOH HOH . C 3 HOH A 37 941 37 HOH HOH . C 3 HOH A 38 942 38 HOH HOH . C 3 HOH A 39 943 39 HOH HOH . C 3 HOH A 40 944 40 HOH HOH . C 3 HOH A 41 945 41 HOH HOH . C 3 HOH A 42 946 42 HOH HOH . C 3 HOH A 43 947 43 HOH HOH . C 3 HOH A 44 948 44 HOH HOH . C 3 HOH A 45 949 45 HOH HOH . C 3 HOH A 46 950 46 HOH HOH . C 3 HOH A 47 951 47 HOH HOH . C 3 HOH A 48 952 48 HOH HOH . C 3 HOH A 49 953 49 HOH HOH . C 3 HOH A 50 954 50 HOH HOH . C 3 HOH A 51 955 51 HOH HOH . C 3 HOH A 52 956 52 HOH HOH . C 3 HOH A 53 957 53 HOH HOH . C 3 HOH A 54 958 54 HOH HOH . C 3 HOH A 55 959 55 HOH HOH . C 3 HOH A 56 960 56 HOH HOH . C 3 HOH A 57 961 57 HOH HOH . C 3 HOH A 58 962 58 HOH HOH . C 3 HOH A 59 963 59 HOH HOH . C 3 HOH A 60 964 60 HOH HOH . C 3 HOH A 61 965 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . B 2 0.965 7.741 50.853 0 74.41 ? P 5GP 904 A 1 HETATM 2 O O1P 5GP . . . B 2 0.088 6.616 50.468 0 74.39 ? O1P 5GP 904 A 1 HETATM 3 O O2P 5GP . . . B 2 1.584 8.476 49.726 0 74.39 ? O2P 5GP 904 A 1 HETATM 4 O O3P 5GP . . . B 2 0.4 8.618 51.909 0 74.39 ? O3P 5GP 904 A 1 HETATM 5 O O5' 5GP . . . B 2 2.211 7.025 51.571 1 74.4 ? O5' 5GP 904 A 1 HETATM 6 C C5' 5GP . . . B 2 2.931 7.776 52.61 1 74.27 ? C5' 5GP 904 A 1 HETATM 7 C C4' 5GP . . . B 2 3.926 7.143 53.734 1 73.55 ? C4' 5GP 904 A 1 HETATM 8 O O4' 5GP . . . B 2 5.093 6.306 53.285 1 73.18 ? O4' 5GP 904 A 1 HETATM 9 C C3' 5GP . . . B 2 4.603 8.439 54.406 1 73.27 ? C3' 5GP 904 A 1 HETATM 10 O O3' 5GP . . . B 2 4.761 8.242 55.88 1 72.82 ? O3' 5GP 904 A 1 HETATM 11 C C2' 5GP . . . B 2 6.01 8.414 53.628 1 72.83 ? C2' 5GP 904 A 1 HETATM 12 O O2' 5GP . . . B 2 6.979 9.256 54.257 1 72.37 ? O2' 5GP 904 A 1 HETATM 13 C C1' 5GP . . . B 2 6.333 6.922 53.818 1 72.55 ? C1' 5GP 904 A 1 HETATM 14 N N9 5GP . . . B 2 7.591 6.42 53.128 1 71.52 ? N9 5GP 904 A 1 HETATM 15 C C8 5GP . . . B 2 8.838 6.2 53.668 1 71.08 ? C8 5GP 904 A 1 HETATM 16 N N7 5GP . . . B 2 9.708 5.654 52.844 1 70.76 ? N7 5GP 904 A 1 HETATM 17 C C5 5GP . . . B 2 8.996 5.486 51.647 1 70.97 ? C5 5GP 904 A 1 HETATM 18 C C6 5GP . . . B 2 9.385 4.847 50.33 1 71.36 ? C6 5GP 904 A 1 HETATM 19 O O6 5GP . . . B 2 10.431 4.275 49.849 1 70.68 ? O6 5GP 904 A 1 HETATM 20 N N1 5GP . . . B 2 8.244 4.886 49.512 1 71.83 ? N1 5GP 904 A 1 HETATM 21 C C2 5GP . . . B 2 6.989 5.426 49.859 1 71.86 ? C2 5GP 904 A 1 HETATM 22 N N2 5GP . . . B 2 6.029 5.35 48.917 1 72.15 ? N2 5GP 904 A 1 HETATM 23 N N3 5GP . . . B 2 6.67 5.991 51.033 1 71.28 ? N3 5GP 904 A 1 HETATM 24 C C4 5GP . . . B 2 7.708 5.975 51.859 1 71.06 ? C4 5GP 904 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #