data_1WB0 # _model_server_result.job_id FsqUSD2WJsvYaliSDnSaCQ _model_server_result.datetime_utc '2024-11-27 01:30:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1397}' # _entry.id 1WB0 # _exptl.entry_id 1WB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WB0 _cell.length_a 48.286 _cell.length_b 53.725 _cell.length_c 134.645 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 26 1_555 A SG CYS 30 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 286 A CYS 307 1_555 A SG CYS 349 A CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 B C VR0 1 B VR0 1388 1_555 B N MEA 2 B MEA 1389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale2 B N VR0 1 B VR0 1388 1_555 B C DAL 5 B DAL 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C MEA 2 B MEA 1389 1_555 B N IAS 3 B IAS 1390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 B CG IAS 3 B IAS 1390 1_555 B N IAS 4 B IAS 1391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 B CG IAS 4 B IAS 1391 1_555 B N DAL 5 B DAL 1392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 141 n n C1 C2 GOL sing 142 n n C1 H11 GOL sing 143 n n C1 H12 GOL sing 144 n n O1 HO1 GOL sing 145 n n C2 O2 GOL sing 146 n n C2 C3 GOL sing 147 n n C2 H2 GOL sing 148 n n O2 HO2 GOL sing 149 n n C3 O3 GOL sing 150 n n C3 H31 GOL sing 151 n n C3 H32 GOL sing 152 n n O3 HO3 GOL sing 153 n n # _atom_sites.entry_id 1WB0 _atom_sites.fract_transf_matrix[1][1] 0.02071 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IPA A 1 1393 1393 IPA IPA . D 4 SO4 A 1 1394 1394 SO4 SO4 . E 4 SO4 A 1 1395 1395 SO4 SO4 . F 4 SO4 A 1 469 469 SO4 SO4 . G 4 SO4 A 1 1396 1396 SO4 SO4 . H 5 GOL A 1 1397 1397 GOL GOL . I 6 HOH A 1 2004 2004 HOH HOH . I 6 HOH A 2 2005 2005 HOH HOH . I 6 HOH A 3 2006 2006 HOH HOH . I 6 HOH A 4 2007 2007 HOH HOH . I 6 HOH A 5 2008 2008 HOH HOH . I 6 HOH A 6 2009 2009 HOH HOH . I 6 HOH A 7 2010 2010 HOH HOH . I 6 HOH A 8 2011 2011 HOH HOH . I 6 HOH A 9 2012 2012 HOH HOH . I 6 HOH A 10 2013 2013 HOH HOH . I 6 HOH A 11 2014 2014 HOH HOH . I 6 HOH A 12 2015 2015 HOH HOH . I 6 HOH A 13 2016 2016 HOH HOH . I 6 HOH A 14 2017 2017 HOH HOH . I 6 HOH A 15 2018 2018 HOH HOH . I 6 HOH A 16 2019 2019 HOH HOH . I 6 HOH A 17 2020 2020 HOH HOH . I 6 HOH A 18 2021 2021 HOH HOH . I 6 HOH A 19 2022 2022 HOH HOH . I 6 HOH A 20 2023 2023 HOH HOH . I 6 HOH A 21 2024 2024 HOH HOH . I 6 HOH A 22 2025 2025 HOH HOH . I 6 HOH A 23 2026 2026 HOH HOH . I 6 HOH A 24 2027 2027 HOH HOH . I 6 HOH A 25 2028 2028 HOH HOH . I 6 HOH A 26 2029 2029 HOH HOH . I 6 HOH A 27 2030 2030 HOH HOH . I 6 HOH A 28 2031 2031 HOH HOH . I 6 HOH A 29 2032 2032 HOH HOH . I 6 HOH A 30 2033 2033 HOH HOH . I 6 HOH A 31 2034 2034 HOH HOH . I 6 HOH A 32 2035 2035 HOH HOH . I 6 HOH A 33 2036 2036 HOH HOH . I 6 HOH A 34 2037 2037 HOH HOH . I 6 HOH A 35 2038 2038 HOH HOH . I 6 HOH A 36 2039 2039 HOH HOH . I 6 HOH A 37 2040 2040 HOH HOH . I 6 HOH A 38 2041 2041 HOH HOH . I 6 HOH A 39 2042 2042 HOH HOH . I 6 HOH A 40 2043 2043 HOH HOH . I 6 HOH A 41 2044 2044 HOH HOH . I 6 HOH A 42 2045 2045 HOH HOH . I 6 HOH A 43 2046 2046 HOH HOH . I 6 HOH A 44 2047 2047 HOH HOH . I 6 HOH A 45 2048 2048 HOH HOH . I 6 HOH A 46 2049 2049 HOH HOH . I 6 HOH A 47 2050 2050 HOH HOH . I 6 HOH A 48 2051 2051 HOH HOH . I 6 HOH A 49 2052 2052 HOH HOH . I 6 HOH A 50 2053 2053 HOH HOH . I 6 HOH A 51 2054 2054 HOH HOH . I 6 HOH A 52 2055 2055 HOH HOH . I 6 HOH A 53 2056 2056 HOH HOH . I 6 HOH A 54 2057 2057 HOH HOH . I 6 HOH A 55 2058 2058 HOH HOH . I 6 HOH A 56 2059 2059 HOH HOH . I 6 HOH A 57 2060 2060 HOH HOH . I 6 HOH A 58 2061 2061 HOH HOH . I 6 HOH A 59 2062 2062 HOH HOH . I 6 HOH A 60 2063 2063 HOH HOH . I 6 HOH A 61 2064 2064 HOH HOH . I 6 HOH A 62 2065 2065 HOH HOH . I 6 HOH A 63 2066 2066 HOH HOH . I 6 HOH A 64 2067 2067 HOH HOH . I 6 HOH A 65 2068 2068 HOH HOH . I 6 HOH A 66 2069 2069 HOH HOH . I 6 HOH A 67 2070 2070 HOH HOH . I 6 HOH A 68 2071 2071 HOH HOH . I 6 HOH A 69 2072 2072 HOH HOH . I 6 HOH A 70 2073 2073 HOH HOH . I 6 HOH A 71 2074 2074 HOH HOH . I 6 HOH A 72 2075 2075 HOH HOH . I 6 HOH A 73 2076 2076 HOH HOH . I 6 HOH A 74 2077 2077 HOH HOH . I 6 HOH A 75 2078 2078 HOH HOH . I 6 HOH A 76 2079 2079 HOH HOH . I 6 HOH A 77 2080 2080 HOH HOH . I 6 HOH A 78 2081 2081 HOH HOH . I 6 HOH A 79 2082 2082 HOH HOH . I 6 HOH A 80 2083 2083 HOH HOH . I 6 HOH A 81 2084 2084 HOH HOH . I 6 HOH A 82 2085 2085 HOH HOH . I 6 HOH A 83 2086 2086 HOH HOH . I 6 HOH A 84 2087 2087 HOH HOH . I 6 HOH A 85 2088 2088 HOH HOH . I 6 HOH A 86 2089 2089 HOH HOH . I 6 HOH A 87 2090 2090 HOH HOH . I 6 HOH A 88 2091 2091 HOH HOH . I 6 HOH A 89 2092 2092 HOH HOH . I 6 HOH A 90 2093 2093 HOH HOH . I 6 HOH A 91 2094 2094 HOH HOH . I 6 HOH A 92 2095 2095 HOH HOH . I 6 HOH A 93 2096 2096 HOH HOH . I 6 HOH A 94 2097 2097 HOH HOH . I 6 HOH A 95 2098 2098 HOH HOH . I 6 HOH A 96 2099 2099 HOH HOH . I 6 HOH A 97 2100 2100 HOH HOH . I 6 HOH A 98 2101 2101 HOH HOH . I 6 HOH A 99 2102 2102 HOH HOH . I 6 HOH A 100 2103 2103 HOH HOH . I 6 HOH A 101 2104 2104 HOH HOH . I 6 HOH A 102 2105 2105 HOH HOH . I 6 HOH A 103 2106 2106 HOH HOH . I 6 HOH A 104 2107 2107 HOH HOH . I 6 HOH A 105 2108 2108 HOH HOH . I 6 HOH A 106 2109 2109 HOH HOH . I 6 HOH A 107 2110 2110 HOH HOH . I 6 HOH A 108 2111 2111 HOH HOH . I 6 HOH A 109 2112 2112 HOH HOH . I 6 HOH A 110 2113 2113 HOH HOH . I 6 HOH A 111 2114 2114 HOH HOH . I 6 HOH A 112 2115 2115 HOH HOH . I 6 HOH A 113 2116 2116 HOH HOH . I 6 HOH A 114 2117 2117 HOH HOH . I 6 HOH A 115 2118 2118 HOH HOH . I 6 HOH A 116 2119 2119 HOH HOH . I 6 HOH A 117 2120 2120 HOH HOH . I 6 HOH A 118 2121 2121 HOH HOH . I 6 HOH A 119 2122 2122 HOH HOH . I 6 HOH A 120 2123 2123 HOH HOH . I 6 HOH A 121 2124 2124 HOH HOH . I 6 HOH A 122 2125 2125 HOH HOH . I 6 HOH A 123 2126 2126 HOH HOH . I 6 HOH A 124 2127 2127 HOH HOH . I 6 HOH A 125 2128 2128 HOH HOH . I 6 HOH A 126 2129 2129 HOH HOH . I 6 HOH A 127 2130 2130 HOH HOH . I 6 HOH A 128 2131 2131 HOH HOH . I 6 HOH A 129 2132 2132 HOH HOH . I 6 HOH A 130 2133 2133 HOH HOH . I 6 HOH A 131 2134 2134 HOH HOH . I 6 HOH A 132 2135 2135 HOH HOH . I 6 HOH A 133 2136 2136 HOH HOH . I 6 HOH A 134 2137 2137 HOH HOH . I 6 HOH A 135 2138 2138 HOH HOH . I 6 HOH A 136 2139 2139 HOH HOH . I 6 HOH A 137 2140 2140 HOH HOH . I 6 HOH A 138 2141 2141 HOH HOH . I 6 HOH A 139 2142 2142 HOH HOH . I 6 HOH A 140 2143 2143 HOH HOH . I 6 HOH A 141 2144 2144 HOH HOH . I 6 HOH A 142 2145 2145 HOH HOH . I 6 HOH A 143 2146 2146 HOH HOH . I 6 HOH A 144 2147 2147 HOH HOH . I 6 HOH A 145 2148 2148 HOH HOH . I 6 HOH A 146 2149 2149 HOH HOH . I 6 HOH A 147 2150 2150 HOH HOH . I 6 HOH A 148 2151 2151 HOH HOH . I 6 HOH A 149 2152 2152 HOH HOH . I 6 HOH A 150 2153 2153 HOH HOH . I 6 HOH A 151 2154 2154 HOH HOH . I 6 HOH A 152 2155 2155 HOH HOH . I 6 HOH A 153 2156 2156 HOH HOH . I 6 HOH A 154 2157 2157 HOH HOH . I 6 HOH A 155 2158 2158 HOH HOH . I 6 HOH A 156 2159 2159 HOH HOH . I 6 HOH A 157 2160 2160 HOH HOH . I 6 HOH A 158 2161 2161 HOH HOH . I 6 HOH A 159 2162 2162 HOH HOH . I 6 HOH A 160 2163 2163 HOH HOH . I 6 HOH A 161 2164 2164 HOH HOH . I 6 HOH A 162 2165 2165 HOH HOH . I 6 HOH A 163 2166 2166 HOH HOH . I 6 HOH A 164 2167 2167 HOH HOH . I 6 HOH A 165 2168 2168 HOH HOH . I 6 HOH A 166 2169 2169 HOH HOH . I 6 HOH A 167 2170 2170 HOH HOH . I 6 HOH A 168 2171 2171 HOH HOH . I 6 HOH A 169 2172 2172 HOH HOH . I 6 HOH A 170 2173 2173 HOH HOH . I 6 HOH A 171 2174 2174 HOH HOH . I 6 HOH A 172 2175 2175 HOH HOH . I 6 HOH A 173 2176 2176 HOH HOH . I 6 HOH A 174 2177 2177 HOH HOH . I 6 HOH A 175 2178 2178 HOH HOH . I 6 HOH A 176 2179 2179 HOH HOH . I 6 HOH A 177 2180 2180 HOH HOH . I 6 HOH A 178 2181 2181 HOH HOH . I 6 HOH A 179 2182 2182 HOH HOH . I 6 HOH A 180 2183 2183 HOH HOH . I 6 HOH A 181 2184 2184 HOH HOH . I 6 HOH A 182 2185 2185 HOH HOH . I 6 HOH A 183 2186 2186 HOH HOH . I 6 HOH A 184 2187 2187 HOH HOH . I 6 HOH A 185 2188 2188 HOH HOH . I 6 HOH A 186 2189 2189 HOH HOH . I 6 HOH A 187 2190 2190 HOH HOH . I 6 HOH A 188 2191 2191 HOH HOH . I 6 HOH A 189 2192 2192 HOH HOH . I 6 HOH A 190 2193 2193 HOH HOH . I 6 HOH A 191 2194 2194 HOH HOH . I 6 HOH A 192 2195 2195 HOH HOH . I 6 HOH A 193 2196 2196 HOH HOH . I 6 HOH A 194 2197 2197 HOH HOH . I 6 HOH A 195 2198 2198 HOH HOH . I 6 HOH A 196 2199 2199 HOH HOH . I 6 HOH A 197 2200 2200 HOH HOH . I 6 HOH A 198 2201 2201 HOH HOH . I 6 HOH A 199 2202 2202 HOH HOH . I 6 HOH A 200 2203 2203 HOH HOH . I 6 HOH A 201 2204 2204 HOH HOH . I 6 HOH A 202 2205 2205 HOH HOH . I 6 HOH A 203 2206 2206 HOH HOH . I 6 HOH A 204 2207 2207 HOH HOH . I 6 HOH A 205 2208 2208 HOH HOH . I 6 HOH A 206 2209 2209 HOH HOH . I 6 HOH A 207 2210 2210 HOH HOH . I 6 HOH A 208 2211 2211 HOH HOH . I 6 HOH A 209 2212 2212 HOH HOH . I 6 HOH A 210 2213 2213 HOH HOH . I 6 HOH A 211 2214 2214 HOH HOH . I 6 HOH A 212 2215 2215 HOH HOH . I 6 HOH A 213 2216 2216 HOH HOH . I 6 HOH A 214 2217 2217 HOH HOH . I 6 HOH A 215 2218 2218 HOH HOH . I 6 HOH A 216 2219 2219 HOH HOH . I 6 HOH A 217 2220 2220 HOH HOH . I 6 HOH A 218 2223 2223 HOH HOH . I 6 HOH A 219 2224 2224 HOH HOH . I 6 HOH A 220 2225 2225 HOH HOH . I 6 HOH A 221 2226 2226 HOH HOH . I 6 HOH A 222 2227 2227 HOH HOH . J 6 HOH B 1 2221 2221 HOH HOH . J 6 HOH B 2 2222 2222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 -5.317 1.437 19.322 1 41.72 ? C1 GOL 1397 A 1 HETATM 2 O O1 GOL . . . H 5 -6.135 0.625 18.467 1 44.3 ? O1 GOL 1397 A 1 HETATM 3 C C2 GOL . . . H 5 -6.064 1.766 20.62 1 41.96 ? C2 GOL 1397 A 1 HETATM 4 O O2 GOL . . . H 5 -7.29 2.455 20.327 1 43.81 ? O2 GOL 1397 A 1 HETATM 5 C C3 GOL . . . H 5 -5.176 2.635 21.517 1 40.86 ? C3 GOL 1397 A 1 HETATM 6 O O3 GOL . . . H 5 -3.977 1.924 21.828 0.05 40.37 ? O3 GOL 1397 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #