data_1WBP # _model_server_result.job_id fSBiCNlppCHZL7dxFyQ9uQ _model_server_result.datetime_utc '2025-01-04 02:43:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":950}' # _entry.id 1WBP # _exptl.entry_id 1WBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1WBP _cell.length_a 78.68 _cell.length_b 78.68 _cell.length_c 310.54 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 7 n n PB O2B ADP sing 8 n n PB O3B ADP sing 9 n n PB O3A ADP sing 10 n n O2B HOB2 ADP sing 11 n n O3B HOB3 ADP sing 12 n n PA O1A ADP doub 13 n n PA O2A ADP sing 14 n n PA O3A ADP sing 15 n n PA O5' ADP sing 16 n n O2A HOA2 ADP sing 17 n n O5' C5' ADP sing 18 n n C5' C4' ADP sing 19 n n C5' "H5'1" ADP sing 20 n n C5' "H5'2" ADP sing 21 n n C4' O4' ADP sing 22 n n C4' C3' ADP sing 23 n n C4' H4' ADP sing 24 n n O4' C1' ADP sing 25 n n C3' O3' ADP sing 26 n n C3' C2' ADP sing 27 n n C3' H3' ADP sing 28 n n O3' HO3' ADP sing 29 n n C2' O2' ADP sing 30 n n C2' C1' ADP sing 31 n n C2' H2' ADP sing 32 n n O2' HO2' ADP sing 33 n n C1' N9 ADP sing 34 n n C1' H1' ADP sing 35 n n N9 C8 ADP sing 36 n y N9 C4 ADP sing 37 n y C8 N7 ADP doub 38 n y C8 H8 ADP sing 39 n n N7 C5 ADP sing 40 n y C5 C6 ADP sing 41 n y C5 C4 ADP doub 42 n y C6 N6 ADP sing 43 n n C6 N1 ADP doub 44 n y N6 HN61 ADP sing 45 n n N6 HN62 ADP sing 46 n n N1 C2 ADP sing 47 n y C2 N3 ADP doub 48 n y C2 H2 ADP sing 49 n n N3 C4 ADP sing 50 n y # _atom_sites.entry_id 1WBP _atom_sites.fract_transf_matrix[1][1] 0.01271 _atom_sites.fract_transf_matrix[1][2] 0.007338 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT A 1 900 900 ACT ACT . D 4 ADP A 1 950 950 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 4 25.094 20.724 30.846 1 176.55 ? PB ADP 950 A 1 HETATM 2 O O1B ADP . . . D 4 25.983 21.682 31.543 1 175.17 ? O1B ADP 950 A 1 HETATM 3 O O2B ADP . . . D 4 23.645 21.11 30.902 1 174.64 ? O2B ADP 950 A 1 HETATM 4 O O3B ADP . . . D 4 25.582 20.428 29.366 1 169.81 ? O3B ADP 950 A 1 HETATM 5 P PA ADP . . . D 4 25.671 17.927 31.306 1 160.45 ? PA ADP 950 A 1 HETATM 6 O O1A ADP . . . D 4 24.756 16.938 31.994 1 157.8 ? O1A ADP 950 A 1 HETATM 7 O O2A ADP . . . D 4 25.741 17.771 29.802 1 164.53 ? O2A ADP 950 A 1 HETATM 8 O O3A ADP . . . D 4 25.2 19.373 31.702 1 166.83 ? O3A ADP 950 A 1 HETATM 9 O O5' ADP . . . D 4 27.071 17.728 32.082 1 148.17 ? O5' ADP 950 A 1 HETATM 10 C C5' ADP . . . D 4 28.267 18.512 31.735 1 137.7 ? C5' ADP 950 A 1 HETATM 11 C C4' ADP . . . D 4 29.365 17.791 30.898 1 129.58 ? C4' ADP 950 A 1 HETATM 12 O O4' ADP . . . D 4 29.434 16.36 31.197 1 123.22 ? O4' ADP 950 A 1 HETATM 13 C C3' ADP . . . D 4 29.218 17.836 29.362 1 125.51 ? C3' ADP 950 A 1 HETATM 14 O O3' ADP . . . D 4 29.676 19.132 28.894 1 118.56 ? O3' ADP 950 A 1 HETATM 15 C C2' ADP . . . D 4 30.051 16.611 28.92 1 122.3 ? C2' ADP 950 A 1 HETATM 16 O O2' ADP . . . D 4 31.455 16.886 28.725 1 107.22 ? O2' ADP 950 A 1 HETATM 17 C C1' ADP . . . D 4 29.864 15.589 30.061 1 117.62 ? C1' ADP 950 A 1 HETATM 18 N N9 ADP . . . D 4 28.84 14.499 29.715 1 113.43 ? N9 ADP 950 A 1 HETATM 19 C C8 ADP . . . D 4 27.48 14.539 29.867 1 111.34 ? C8 ADP 950 A 1 HETATM 20 N N7 ADP . . . D 4 26.854 13.403 29.466 1 108.2 ? N7 ADP 950 A 1 HETATM 21 C C5 ADP . . . D 4 27.874 12.597 29.041 1 104.99 ? C5 ADP 950 A 1 HETATM 22 C C6 ADP . . . D 4 27.876 11.228 28.493 1 99 ? C6 ADP 950 A 1 HETATM 23 N N6 ADP . . . D 4 26.841 10.47 28.29 1 77.46 ? N6 ADP 950 A 1 HETATM 24 N N1 ADP . . . D 4 29.15 10.759 28.168 1 99.31 ? N1 ADP 950 A 1 HETATM 25 C C2 ADP . . . D 4 30.323 11.502 28.349 1 102.5 ? C2 ADP 950 A 1 HETATM 26 N N3 ADP . . . D 4 30.342 12.745 28.856 1 110.76 ? N3 ADP 950 A 1 HETATM 27 C C4 ADP . . . D 4 29.116 13.257 29.177 1 110.85 ? C4 ADP 950 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #