data_1WBU # _model_server_result.job_id nauQH73L9hCh83VsWBh-HA _model_server_result.datetime_utc '2024-12-27 17:41:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1125}' # _entry.id 1WBU # _exptl.entry_id 1WBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.101 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-AMINO-1H-PYRIMIDINE-2,4-DIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.7 _cell.angle_gamma 90 _cell.entry_id 1WBU _cell.length_a 100.035 _cell.length_b 32.604 _cell.length_c 72.321 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? # _chem_comp.formula 'C4 H5 N3 O2' _chem_comp.formula_weight 127.101 _chem_comp.id WBU _chem_comp.mon_nstd_flag . _chem_comp.name 5-AMINO-1H-PYRIMIDINE-2,4-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 WBU sing 348 n y N1 C6 WBU sing 349 n y N1 H1 WBU sing 350 n n C2 O2 WBU doub 351 n n C2 N3 WBU sing 352 n y N3 C4 WBU sing 353 n y N3 H3 WBU sing 354 n n C4 O4 WBU doub 355 n n C4 C5 WBU sing 356 n y C5 C6 WBU doub 357 n y C5 N01 WBU sing 358 n n C6 H6 WBU sing 359 n n N01 H011 WBU sing 360 n n N01 H012 WBU sing 361 n n # _atom_sites.entry_id 1WBU _atom_sites.fract_transf_matrix[1][1] 0.009997 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000122 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WBU A 1 1125 1125 WBU WBU . D 2 WBU B 1 1125 1125 WBU WBU . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . E 3 HOH A 40 2040 2040 HOH HOH . E 3 HOH A 41 2041 2041 HOH HOH . E 3 HOH A 42 2042 2042 HOH HOH . E 3 HOH A 43 2043 2043 HOH HOH . E 3 HOH A 44 2044 2044 HOH HOH . E 3 HOH A 45 2045 2045 HOH HOH . E 3 HOH A 46 2046 2046 HOH HOH . E 3 HOH A 47 2047 2047 HOH HOH . E 3 HOH A 48 2048 2048 HOH HOH . E 3 HOH A 49 2049 2049 HOH HOH . E 3 HOH A 50 2050 2050 HOH HOH . E 3 HOH A 51 2051 2051 HOH HOH . E 3 HOH A 52 2052 2052 HOH HOH . E 3 HOH A 53 2053 2053 HOH HOH . E 3 HOH A 54 2054 2054 HOH HOH . E 3 HOH A 55 2055 2055 HOH HOH . E 3 HOH A 56 2056 2056 HOH HOH . E 3 HOH A 57 2057 2057 HOH HOH . E 3 HOH A 58 2058 2058 HOH HOH . E 3 HOH A 59 2059 2059 HOH HOH . E 3 HOH A 60 2060 2060 HOH HOH . E 3 HOH A 61 2061 2061 HOH HOH . E 3 HOH A 62 2062 2062 HOH HOH . E 3 HOH A 63 2063 2063 HOH HOH . E 3 HOH A 64 2064 2064 HOH HOH . E 3 HOH A 65 2065 2065 HOH HOH . E 3 HOH A 66 2066 2066 HOH HOH . E 3 HOH A 67 2067 2067 HOH HOH . E 3 HOH A 68 2068 2068 HOH HOH . E 3 HOH A 69 2069 2069 HOH HOH . E 3 HOH A 70 2070 2070 HOH HOH . E 3 HOH A 71 2071 2071 HOH HOH . E 3 HOH A 72 2072 2072 HOH HOH . E 3 HOH A 73 2073 2073 HOH HOH . E 3 HOH A 74 2074 2074 HOH HOH . E 3 HOH A 75 2075 2075 HOH HOH . E 3 HOH A 76 2076 2076 HOH HOH . E 3 HOH A 77 2077 2077 HOH HOH . E 3 HOH A 78 2078 2078 HOH HOH . E 3 HOH A 79 2079 2079 HOH HOH . E 3 HOH A 80 2080 2080 HOH HOH . E 3 HOH A 81 2081 2081 HOH HOH . E 3 HOH A 82 2082 2082 HOH HOH . E 3 HOH A 83 2083 2083 HOH HOH . E 3 HOH A 84 2084 2084 HOH HOH . E 3 HOH A 85 2085 2085 HOH HOH . E 3 HOH A 86 2086 2086 HOH HOH . E 3 HOH A 87 2087 2087 HOH HOH . E 3 HOH A 88 2088 2088 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . F 3 HOH B 38 2038 2038 HOH HOH . F 3 HOH B 39 2039 2039 HOH HOH . F 3 HOH B 40 2040 2040 HOH HOH . F 3 HOH B 41 2041 2041 HOH HOH . F 3 HOH B 42 2042 2042 HOH HOH . F 3 HOH B 43 2043 2043 HOH HOH . F 3 HOH B 44 2044 2044 HOH HOH . F 3 HOH B 45 2045 2045 HOH HOH . F 3 HOH B 46 2046 2046 HOH HOH . F 3 HOH B 47 2047 2047 HOH HOH . F 3 HOH B 48 2048 2048 HOH HOH . F 3 HOH B 49 2049 2049 HOH HOH . F 3 HOH B 50 2050 2050 HOH HOH . F 3 HOH B 51 2051 2051 HOH HOH . F 3 HOH B 52 2052 2052 HOH HOH . F 3 HOH B 53 2053 2053 HOH HOH . F 3 HOH B 54 2054 2054 HOH HOH . F 3 HOH B 55 2055 2055 HOH HOH . F 3 HOH B 56 2056 2056 HOH HOH . F 3 HOH B 57 2057 2057 HOH HOH . F 3 HOH B 58 2058 2058 HOH HOH . F 3 HOH B 59 2059 2059 HOH HOH . F 3 HOH B 60 2060 2060 HOH HOH . F 3 HOH B 61 2061 2061 HOH HOH . F 3 HOH B 62 2062 2062 HOH HOH . F 3 HOH B 63 2063 2063 HOH HOH . F 3 HOH B 64 2064 2064 HOH HOH . F 3 HOH B 65 2065 2065 HOH HOH . F 3 HOH B 66 2066 2066 HOH HOH . F 3 HOH B 67 2067 2067 HOH HOH . F 3 HOH B 68 2068 2068 HOH HOH . F 3 HOH B 69 2069 2069 HOH HOH . F 3 HOH B 70 2070 2070 HOH HOH . F 3 HOH B 71 2071 2071 HOH HOH . F 3 HOH B 72 2072 2072 HOH HOH . F 3 HOH B 73 2073 2073 HOH HOH . F 3 HOH B 74 2074 2074 HOH HOH . F 3 HOH B 75 2075 2075 HOH HOH . F 3 HOH B 76 2076 2076 HOH HOH . F 3 HOH B 77 2077 2077 HOH HOH . F 3 HOH B 78 2078 2078 HOH HOH . F 3 HOH B 79 2079 2079 HOH HOH . F 3 HOH B 80 2080 2080 HOH HOH . F 3 HOH B 81 2081 2081 HOH HOH . F 3 HOH B 82 2082 2082 HOH HOH . F 3 HOH B 83 2083 2083 HOH HOH . F 3 HOH B 84 2084 2084 HOH HOH . F 3 HOH B 85 2085 2085 HOH HOH . F 3 HOH B 86 2086 2086 HOH HOH . F 3 HOH B 87 2087 2087 HOH HOH . F 3 HOH B 88 2088 2088 HOH HOH . F 3 HOH B 89 2089 2089 HOH HOH . F 3 HOH B 90 2090 2090 HOH HOH . F 3 HOH B 91 2091 2091 HOH HOH . F 3 HOH B 92 2092 2092 HOH HOH . F 3 HOH B 93 2093 2093 HOH HOH . F 3 HOH B 94 2094 2094 HOH HOH . F 3 HOH B 95 2095 2095 HOH HOH . F 3 HOH B 96 2096 2096 HOH HOH . F 3 HOH B 97 2097 2097 HOH HOH . F 3 HOH B 98 2098 2098 HOH HOH . F 3 HOH B 99 2099 2099 HOH HOH . F 3 HOH B 100 2100 2100 HOH HOH . F 3 HOH B 101 2101 2101 HOH HOH . F 3 HOH B 102 2102 2102 HOH HOH . F 3 HOH B 103 2103 2103 HOH HOH . F 3 HOH B 104 2104 2104 HOH HOH . F 3 HOH B 105 2105 2105 HOH HOH . F 3 HOH B 106 2106 2106 HOH HOH . F 3 HOH B 107 2107 2107 HOH HOH . F 3 HOH B 108 2108 2108 HOH HOH . F 3 HOH B 109 2109 2109 HOH HOH . F 3 HOH B 110 2110 2110 HOH HOH . F 3 HOH B 111 2111 2111 HOH HOH . F 3 HOH B 112 2112 2112 HOH HOH . F 3 HOH B 113 2113 2113 HOH HOH . F 3 HOH B 114 2114 2114 HOH HOH . F 3 HOH B 115 2115 2115 HOH HOH . F 3 HOH B 116 2116 2116 HOH HOH . F 3 HOH B 117 2117 2117 HOH HOH . F 3 HOH B 118 2118 2118 HOH HOH . F 3 HOH B 119 2119 2119 HOH HOH . F 3 HOH B 120 2120 2120 HOH HOH . F 3 HOH B 121 2121 2121 HOH HOH . F 3 HOH B 122 2122 2122 HOH HOH . F 3 HOH B 123 2123 2123 HOH HOH . F 3 HOH B 124 2124 2124 HOH HOH . F 3 HOH B 125 2125 2125 HOH HOH . F 3 HOH B 126 2126 2126 HOH HOH . F 3 HOH B 127 2127 2127 HOH HOH . F 3 HOH B 128 2128 2128 HOH HOH . F 3 HOH B 129 2129 2129 HOH HOH . F 3 HOH B 130 2130 2130 HOH HOH . F 3 HOH B 131 2131 2131 HOH HOH . F 3 HOH B 132 2132 2132 HOH HOH . F 3 HOH B 133 2133 2133 HOH HOH . F 3 HOH B 134 2134 2134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 WBU . . . C 2 36.005 -2.076 12.475 1 27.87 ? N1 WBU 1125 A 1 HETATM 2 C C2 WBU . . . C 2 35.082 -2.402 11.532 1 27.26 ? C2 WBU 1125 A 1 HETATM 3 O O2 WBU . . . C 2 34.747 -1.572 10.711 1 23.15 ? O2 WBU 1125 A 1 HETATM 4 N N3 WBU . . . C 2 34.525 -3.641 11.495 1 27.07 ? N3 WBU 1125 A 1 HETATM 5 C C4 WBU . . . C 2 34.883 -4.587 12.406 1 29.88 ? C4 WBU 1125 A 1 HETATM 6 O O4 WBU . . . C 2 34.38 -5.7 12.37 1 29.66 ? O4 WBU 1125 A 1 HETATM 7 C C5 WBU . . . C 2 35.858 -4.259 13.41 1 29.9 ? C5 WBU 1125 A 1 HETATM 8 C C6 WBU . . . C 2 36.402 -3.004 13.424 1 30.08 ? C6 WBU 1125 A 1 HETATM 9 N N01 WBU . . . C 2 36.253 -5.216 14.366 1 31.38 ? N01 WBU 1125 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #